BAC Information

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BAC

Clone NameB6Ng01-140N21
Chromosome6 (Build37)
Map Location 13,998,205 - 14,116,455
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043
Downstream geneLOC100040513, LOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140N21.bB6Ng01-140N21.g
ACCDH939480DH939481
length1,086776
definitionDH939480|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N21, 5' end.DH939481|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,115,356 - 14,116,455)(13,998,205 - 13,999,287)
sequence
gaattcagttcttatagttttctcatagaaaatggtagagttgttccatt
gcatcttagtacacgctttctatataaaggtacatatcacatggtatatg
catgtggctaatatgtacaagaaactctgtaggtactataaatagtgtta
tgggaaaatattcaattatattaatcttccttagaagtacagagccaata
gaatatatattgagtttattttgttggcttacacaataggggataggtgc
aaaaatacccattgtgtatagaatcattctgtaaaaatataaaagtcaat
gtcttaacccaaggttaaaagtctagaaaactagttcattaattttctga
tattctcacaaaaaaaaaaaaaaaaaaccaaagaagatagagtttaatga
tgtttggtaatggaagatggaagcagaaatagacacttgttcagagaaat
ggaaggttgaacattgattttgttcctcttctaacatttttccatatagg
ccaccaatctatcagatgatgctgtctgaatctatgtcaggacttttaca
ctcagctatgtctcaaatattaattctctctggaaatggtgaaaaaaaga
catacccaaagctatgcctcaccacatgatagatgattctgtatatggtc
acatttacaatgatgattaattatcacaataatgatataatgaagaaatg
aataatgttggttagtaatgataaaattaaggtacaaggatagatatttt
caattttttgccagtgaacaaaaaggtaatatggaaatgactttggacat
agtcctacctggcttttttttcccagaataatgactctaagatgtaacta
tttatgactaaatacctaggagataagctttggcttattctcctccaact
agctcagatttatatacccatttattctctttgtctgcacatggtggtac
tcccctcagtttcatccatctgactttctcaagttctgggtgaatctcgt
gctactatttccagatcttctctctttctggcggaatcatcttctatctg
gctaactaacttgcatggggagtgaggacttgaggc
gaattcagttcccttagctacttagactcttgagttccctgatggactga
aaaacttaggatgtggtgggggtttttgcattcctcatcattagtgtgaa
agcagcattctctcaaaacttttcacatgtcatagaaactggaatggaac
caattctgacagccatagatatttgtgtttcatttagaaaatccacatag
gttacatagctttataggtgacttgggaagggatcttttcaaaggggaaa
ttagaaagcagtatcatagacaatggggaaatgagaatagggtgagtaaa
ttgtaagagagtgggagactaagttaaagaacggaagatgggaagatgaa
ggtaaccctaaaggtcctttcaacaatcatatagaaacttactactgtag
tggctcctagaatacatacatagataaaagtaatttaaatggagccctca
tacagtgtgtacagcagggtgtacaattacccaatgagacatcatatgct
atcatgcaaaatgttaaattttggtaaagttacaggcttttgtttttgtt
tattgagaaggaggaagaacacaaagttggctgaggtaggggttagggag
gatccggtaggactcagaggagagaaaagaatatcaaaatacatttttat
aatttttttaaaaaaataataaaaaatctaaaaataaaataaaaattaat
taagtgaaaattgttaatgtattttctgtttatgttatttataatttcag
agttgtccaggaaaagctcttctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_14115356_14116455
seq2: B6Ng01-140N21.b_48_1133 (reverse)

seq1  GCCTCAAGTCTTCACT-CCCATGCCAGGTAAGTTAAGCCAGGATTAGAAG  49
      |||||||||| ||||| |||||| || || |||| ||||||   ||||||
seq2  GCCTCAAGTCCTCACTCCCCATG-CAAGTTAGTT-AGCCAG--ATAGAAG  46

seq1  ATGATATCTGGCAGAAAGAGAGAGGATTCTGGGAAATAGTAGCACGAGAT  99
      ||||| || | |||||||||||| || ||| |||||||||||||||||||
seq2  ATGAT-TCCGCCAGAAAGAGAGAAGA-TCT-GGAAATAGTAGCACGAGAT  93

seq1  TCACCCAGAACTTTGAGAAAGTCAGATGGATGAAACTGAGGGGAGGTTAC  149
      ||||||||||| |||||||||||||||||||||||||||||||||  |||
seq2  TCACCCAGAAC-TTGAGAAAGTCAGATGGATGAAACTGAGGGGAG--TAC  140

seq1  CAACCATGTTGCAGACAAAGAGAATAAATGGGTTATATAAATTCTGAGCT  199
      | |||||| ||||||||||||||||||||||| |||||||| ||||||||
seq2  C-ACCATG-TGCAGACAAAGAGAATAAATGGG-TATATAAA-TCTGAGCT  186

seq1  AGTTGGAGGGAGAATAAGCCAAAGCTTATCTCCTAGGTATTTAGTCATAA  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGA-GGAGAATAAGCCAAAGCTTATCTCCTAGGTATTTAGTCATAA  235

seq1  ATAGTTACATCTTAGAGTCATTATTCTGGGAAAAAAAAGCCAGGTAGGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTACATCTTAGAGTCATTATTCTGGGAAAAAAAAGCCAGGTAGGAC  285

seq1  TATGTCCAAAGTCATTTCCATATTACCTTTTTGTTCACTGGCAAAAAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAAAGTCATTTCCATATTACCTTTTTGTTCACTGGCAAAAAATT  335

seq1  GAAAATATCTATCCTTGTACCTTAATTTTATCATTACTAACCAACATTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCTATCCTTGTACCTTAATTTTATCATTACTAACCAACATTAT  385

seq1  TCATTTCTTCATTATATCATTATTGTGATAATTAATCATCATTGTAAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTCATTATATCATTATTGTGATAATTAATCATCATTGTAAATG  435

seq1  TGACCATATACAGAATCATCTATCATGTGGTGAGGCATAGCTTTGGGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATATACAGAATCATCTATCATGTGGTGAGGCATAGCTTTGGGTAT  485

seq1  GTCTTTTTTTCACCATTTCCAGAGAGAATTAATATTTGAGACATAGCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTTTCACCATTTCCAGAGAGAATTAATATTTGAGACATAGCTGA  535

seq1  GTGTAAAAGTCCTGACATAGATTCAGACAGCATCATCTGATAGATTGGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAAGTCCTGACATAGATTCAGACAGCATCATCTGATAGATTGGTG  585

seq1  GCCTATATGGAAAAATGTTAGAAGAGGAACAAAATCAATGTTCAACCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATATGGAAAAATGTTAGAAGAGGAACAAAATCAATGTTCAACCTTC  635

seq1  CATTTCTCTGAACAAGTGTCTATTTCTGCTTCCATCTTCCATTACCAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCTGAACAAGTGTCTATTTCTGCTTCCATCTTCCATTACCAAAC  685

seq1  ATCATTAAACTCTATCTTCTTTGGTTTTTTTTTTTTTTTTTTGTGAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAAACTCTATCTTCTTTGGTTTTTTTTTTTTTTTTTTGTGAGAAT  735

seq1  ATCAGAAAATTAATGAACTAGTTTTCTAGACTTTTAACCTTGGGTTAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAATTAATGAACTAGTTTTCTAGACTTTTAACCTTGGGTTAAGA  785

seq1  CATTGACTTTTATATTTTTACAGAATGATTCTATACACAATGGGTATTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACTTTTATATTTTTACAGAATGATTCTATACACAATGGGTATTTT  835

seq1  TGCACCTATCCCCTATTGTGTAAGCCAACAAAATAAACTCAATATATATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTATCCCCTATTGTGTAAGCCAACAAAATAAACTCAATATATATT  885

seq1  CTATTGGCTCTGTACTTCTAAGGAAGATTAATATAATTGAATATTTTCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGCTCTGTACTTCTAAGGAAGATTAATATAATTGAATATTTTCCC  935

seq1  ATAACACTATTTATAGTACCTACAGAGTTTCTTGTACATATTAGCCACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTATTTATAGTACCTACAGAGTTTCTTGTACATATTAGCCACAT  985

seq1  GCATATACCATGTGATATGTACCTTTATATAGAAAGCGTGTACTAAGATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACCATGTGATATGTACCTTTATATAGAAAGCGTGTACTAAGATG  1035

seq1  CAATGGAACAACTCTACCATTTTCTATGAGAAAACTATAAGAACTGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAACAACTCTACCATTTTCTATGAGAAAACTATAAGAACTGAATT  1085

seq1  C  1100
      |
seq2  C  1086

seq1: chr6_13998205_13999287
seq2: B6Ng01-140N21.g_67_842

seq1  GAATTCAGTTCCCTTAGCTACTTAGACTCTTGAGTTCCCTGATGGACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCTTAGCTACTTAGACTCTTGAGTTCCCTGATGGACTGA  50

seq1  AAAACTTAGGATGTGGTGGGGGTTTTTGCATTCCTCATCATTAGTGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAGGATGTGGTGGGGGTTTTTGCATTCCTCATCATTAGTGTGAA  100

seq1  AGCAGCATTCTCTCAAAACTTTTCACATGTCATAGAAACTGGAATGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATTCTCTCAAAACTTTTCACATGTCATAGAAACTGGAATGGAAC  150

seq1  CAATTCTGACAGCCATAGATATTTGTGTTTCATTTAGAAAATCCACATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGACAGCCATAGATATTTGTGTTTCATTTAGAAAATCCACATAG  200

seq1  GTTACATAGCTTTATAGGTGACTTGGGAAGGGATCTTTTCAAAGGGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATAGCTTTATAGGTGACTTGGGAAGGGATCTTTTCAAAGGGGAAA  250

seq1  TTAGAAAGCAGTATCATAGACAATGGGGAAATGAGAATAGGGTGAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGCAGTATCATAGACAATGGGGAAATGAGAATAGGGTGAGTAAA  300

seq1  TTGTAAGAGAGTGGGAGACTAAGTTAAAGAACGGAAGATGGGAAGATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGAGAGTGGGAGACTAAGTTAAAGAACGGAAGATGGGAAGATGAA  350

seq1  GGTAACCCTAAAGGTCCTTTCAACAATCATATAGAAACTTACTACTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCCTAAAGGTCCTTTCAACAATCATATAGAAACTTACTACTGTAG  400

seq1  TGGCTCCTAGAATACATACATAGATAAAAGTAATTTAAATGGAGCCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTAGAATACATACATAGATAAAAGTAATTTAAATGGAGCCCTCA  450

seq1  TACAGTGTGTACAGCAGGGTGTACAATTACCCAATGAGACATCATATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTGTACAGCAGGGTGTACAATTACCCAATGAGACATCATATGCT  500

seq1  ATCATGCAAAATGTTAAATTTTGGTAAAGTTACAGGCTTTTGTTTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCAAAATGTTAAATTTTGGTAAAGTTACAGGCTTTTGTTTTTGTT  550

seq1  TATTGAGAAGGAGGAAGAACACAAAGTTGGCTGAGGTAGGGGTTAGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGAAGGAGGAAGAACACAAAGTTGGCTGAGGTAGGGGTTAGGGAG  600

seq1  GATCCGGTAGGACTCAGAGGAGAGAAAAGAATATCAAAATACA-TTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATCCGGTAGGACTCAGAGGAGAGAAAAGAATATCAAAATACATTTTTAT  650

seq1  AATTTTTTTAAAAAAATAAT-AAAAATCTAAAAAT-AAATAAAAATTAAT  697
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  AATTTTTTTAAAAAAATAATAAAAAATCTAAAAATAAAATAAAAATTAAT  700

seq1  TAAGTGAAAATTGTTAATGTATTTTCTGTTTATGTTATTTATAATTTCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAAATTGTTAATGTATTTTCTGTTTATGTTATTTATAATTTCAG  750

seq1  TAGTTGTCCAGGAAAAGCTC-TCTAGTGTTTTCACAGAAATTTATATTTT  796
       ||||||||||||||||||| ||||||                       
seq2  -AGTTGTCCAGGAAAAGCTCTTCTAGT-----------------------  776

seq1  AGTATGAAAGCAGAATAGTCATGGAAAAATTACTAGATGGAATGTTATGA  846
                                                        
seq2  --------------------------------------------------  776

seq1  TTAACATAGTTTCAGTGCATTGGATGAAAGCAAAACTATAGACGTCAACT  896
                                                        
seq2  --------------------------------------------------  776

seq1  CCCTTAACAAAAATCAGAGTGGATAATGTACTGATTTTCATCAACTAAAA  946
                                                        
seq2  --------------------------------------------------  776

seq1  AGGAAAAAAAAAAGATGTGCACGTGTTAGGTTATGGAATATTATTGATTA  996
                                                        
seq2  --------------------------------------------------  776

seq1  CAAAAACATCTATTCATATATTTTTTACTTAAAATAGGAATTTTTAGAAC  1046
                                                        
seq2  --------------------------------------------------  776

seq1  AATATAATATTTTCTTTTTAAAAAAGACATATCTAGT  1083
                                           
seq2  -------------------------------------  776