BAC Information

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BAC

Clone NameB6Ng01-141E21
Chromosome6 (Build37)
Map Location 18,002,720 - 18,075,870
singlet/doubletdoublet
Overlap geneAsz1
Upstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7, Wnt2
Downstream geneLOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141E21.bB6Ng01-141E21.g
ACCDH939796DH939797
length1,1091,063
definitionDH939796|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E21, 5' end.DH939797|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,002,720 - 18,003,839)(18,074,798 - 18,075,870)
sequence
gaattcttggtcaagaggtgacacagaaaaaaaaatactacctaagtagt
aaaaaaaaaaaaaaaaaaaaagatgccggttcttttcacaggtatatatt
attaaatgaaatattatgatagctactcatatcatgttttaggttcagga
agtttaaaacaatgcttcttaattttatctgacacagtgtactttggttc
tttctctctaactatatctcactgccacactacaaccaggttttagttta
aaaagccaaattagtagccactcttgccacaaataggcttttaggaattt
cctatttaaaaccatgctttcaaagaagtttctatacacacatctacttt
tctccagaagaatatcatgttgagtggagttacttccacattccctcagt
tctagctgtgaagggggaagtgcggatgcaagctctaactaaccctgggc
tatcagtgagctcaggctctctagcctgtgaggcactccctgcatcccat
ccgcgagtgaatgagccagcgagcaagagtcacgaagaacacagctcccg
cagcagcatctctcccatagaggagctcatttgtttctgaggctgaaacg
caccacttcttttcctgtttcaagcatcttcttcccactaatagagaatt
tgcttcacaactttgttcaatgattaaaagacttctgttgattaaatata
ttttaagggagatgacaaattaccttgaacataaagtttgctcttaaatt
cttttgataaaatattggtaaaatattaaatgattcttaggttgaaacta
tgtaattaagatgtgtcacaaaagttttgcagataacaatttatgaagta
aagaatagagactcagaggtgatttttaaaggaaactcggagtgtctttc
ccttttattttacagcttcaataaaggaaattttactagcctgcatggca
gtacagacatttttaaaagtggaaaaacacctgcctttaattcagactat
gctgctctttatatgaataaaagacaatagcatgttcacattctacacag
ttaattataaacgtgctataaagttggccaataggataaacccttccatt
gcatcttac
gaattctttggtgtttacatccttttgctggaataaactgcaatcattca
tttatacatacatatatatatatatatatacatatatatgtatatataca
tgtatatgtatatatatgcatatatatacatgtatatgtatatatatgta
aatgaaagctatacttatactatcataagtatatttgacattgtagtgaa
aatataaagtatattataagtgtacaatatataatactatataagtaata
tataatatagtaatataatataatatataatatataatattatataagta
atatagtatacaatttatactacagtgtcaaaatagctatcattttaaag
tctgtgtatatagagagaagtataatagtatatttgacattataggataa
atacaggagatatctactaaaggaatgattatttcaatattatttctaaa
aagcatcacagagttcttagttcctttaaacagtaccaatgaagtgtgtg
gtttatatcatgcatagaatttacaattaattcctttataaaacagacct
ataaaaccagggagcctcaatttataatccttttcttcatttttcaattt
tgttgagtagaggcttttgaagcaagacgtaatgatttttaaaaatttct
cagtgtctgtttttatacttccctttttacttctgagtttgttaatttgg
ttaattgtctctatgctttttagttagttaggctatggtttgactaaagt
tagtgtgtctatcttgttgattttctcaaagaaccagctcttggttttgt
tgattccttgtattgttctatttgtttctaaatgattgatttcaaccatg
agtctgattatttcctgctgtctactcctcctgggtgtgttgcttctttt
tgttcaggagctttcaggggtactgtaagtttctagtacaagaactctac
tcaattatgaagtgcccagggtatcaattttcacatagcactggcttcat
tggtctcgtagtatggtttgaaagcttcattttctttagttcctcgaaat
aatttagtttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18002720_18003839
seq2: B6Ng01-141E21.b_46_1154

seq1  GAATTCTTGGTCAAGAGGTGACACAGAAAAAAAAATACTACCTAAGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTCAAGAGGTGACACAGAAAAAAAAATACTACCTAAGTAGT  50

seq1  AAAAAAAAAAAAAAAAAAAAAGATGCCGGTTCTTTTCACAGGTATATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAGATGCCGGTTCTTTTCACAGGTATATATT  100

seq1  ATTAAATGAAATATTATGATAGCTACTCATATCATGTTTTAGGTTCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGAAATATTATGATAGCTACTCATATCATGTTTTAGGTTCAGGA  150

seq1  AGTTTAAAACAATGCTTCTTAATTTTATCTGACACAGTGTACTTTGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAACAATGCTTCTTAATTTTATCTGACACAGTGTACTTTGGTTC  200

seq1  TTTCTCTCTAACTATATCTCACTGCCACACTACAACCAGGTTTTAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTAACTATATCTCACTGCCACACTACAACCAGGTTTTAGTTTA  250

seq1  AAAAGCCAAATTAGTAGCCACTCTTGCCACAAATAGGCTTTTAGGAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAAATTAGTAGCCACTCTTGCCACAAATAGGCTTTTAGGAATTT  300

seq1  CCTATTTAAAACCATGCTTTCAAAGAAGTTTCTATACACACATCTACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTAAAACCATGCTTTCAAAGAAGTTTCTATACACACATCTACTTT  350

seq1  TCTCCAGAAGAATATCATGTTGAGTGGAGTTACTTCCACATTCCCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAAGAATATCATGTTGAGTGGAGTTACTTCCACATTCCCTCAGT  400

seq1  TCTAGCTGTGAAGGGGGAAGTGCGGATGCAAGCTCTAACTAACCCTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGTGAAGGGGGAAGTGCGGATGCAAGCTCTAACTAACCCTGGGC  450

seq1  TATCAGTGAGCTCAGGCTCTCTAGCCTGTGAGGCACTCCCTGCATCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGAGCTCAGGCTCTCTAGCCTGTGAGGCACTCCCTGCATCCCAT  500

seq1  CCGCGAGTGAATGAGCCAGCGAGCAAGAGTCACGAAGAACACAGCTCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGAGTGAATGAGCCAGCGAGCAAGAGTCACGAAGAACACAGCTCCCG  550

seq1  CAGCAGCATCTCTCCCATAGAGGAGCTCATTTGTTTCTGAGGCTGAAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCATCTCTCCCATAGAGGAGCTCATTTGTTTCTGAGGCTGAAACG  600

seq1  CACCACTTCTTTTCCTGTTTCAAGCATCTTCTTCCCACTAATAGAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTCTTTTCCTGTTTCAAGCATCTTCTTCCCACTAATAGAGAATT  650

seq1  TGCTTCACAACTTTGTTCAATGATTAAAAGACTTCTGTTGATTAAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACAACTTTGTTCAATGATTAAAAGACTTCTGTTGATTAAATATA  700

seq1  TTTTAAGGGAGATGACAAATTACCTTGAACATAAAGTTTGCTCTTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGGAGATGACAAATTACCTTGAACATAAAGTTTGCTCTTAAATT  750

seq1  CTTTTGATAAAATATTGGTAAAATATTAAATGATTCTTAGGTTGAAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATAAAATATTGGTAAAATATTAAATGATTCTTAGGTTGAAACTA  800

seq1  TGTAATTAAGATGTGTCACAAAAGTTTTGCAGATAACAAATTTATGAAGT  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTAATTAAGATGTGTCACAAAAGTTTTGCAGATAAC-AATTTATGAAGT  849

seq1  AAAGAATAGAGACTCAGAGGTGATTTTTAAAAGGAAACTCAGAGTGTCTT  900
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  AAAGAATAGAGACTCAGAGGTGATTTTT-AAAGGAAACTCGGAGTGTCTT  898

seq1  TCCC-TTTATTTTACAGCTTCAATAAAGGAAATTTCACTAGCCTGCATGG  949
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCCTTTTATTTTACAGCTTCAATAAAGGAAATTTTACTAGCCTGCATGG  948

seq1  CAGTACAGACATTTTTAAAAGTGGAAAAAACAACCTGCCTTTAAATCCAG  999
      |||||||||||||||||||||||||||||   |||||||||| ||| |||
seq2  CAGTACAGACATTTTTAAAAGTGGAAAAA--CACCTGCCTTT-AATTCAG  995

seq1  ACATATGCTGCTC-TTATATGAATAAAAAGACAATAAACATGTTCACATT  1048
      || |||||||||| |||||||||| |||||||||| | ||||||||||||
seq2  AC-TATGCTGCTCTTTATATGAAT-AAAAGACAAT-AGCATGTTCACATT  1042

seq1  CTACAAACAGTTAATTATAAAACGTGCTATAGAGTTTGGCCAATAGGGAT  1098
      ||||  |||||||||||| |||||||||||| || |||||||||| ||||
seq2  CTAC--ACAGTTAATTAT-AAACGTGCTATAAAG-TTGGCCAATA-GGAT  1087

seq1  AAACAC-TCCATTGCCATCTTAC  1120
      |||| | ||||||| ||||||||
seq2  AAACCCTTCCATTG-CATCTTAC  1109

seq1: chr6_18074798_18075870
seq2: B6Ng01-141E21.g_68_1130 (reverse)

seq1  AAGAAAATAAATTATTTTGA-GAACTAAATGAAAATGAAACTTTTCAAAC  49
      |||||| |||||||||| || |||||||| ||||||||| | ||||||||
seq2  AAGAAACTAAATTATTTCGAGGAACTAAA-GAAAATGAAGC-TTTCAAAC  48

seq1  AAAACTTACGAGACACAATGAAAGCAGTGCTATGTGGAAAATTGATAACA  99
       | || |||||||| |||||||  ||||||||||| |||||||||| || 
seq2  CATAC-TACGAGAC-CAATGAAGCCAGTGCTATGT-GAAAATTGAT-ACC  94

seq1  CTGGGCACCTTCATAAATTGGAGTAGAGTTCTTGTACTAGAAACTTAACA  149
      ||||||| ||||||||  | |||||||||||||||||||||||||| |||
seq2  CTGGGCA-CTTCATAA--TTGAGTAGAGTTCTTGTACTAGAAACTT-ACA  140

seq1  GTACACCTGAAAGCTCTAGAACAAAAAGAAGCAAACACACCCAAGAGGAG  199
      |||| |||||||||||  |||||||||||||| |||||||||| ||||||
seq2  GTACCCCTGAAAGCTCCTGAACAAAAAGAAGC-AACACACCCAGGAGGAG  189

seq1  TAGACAGCAGGAAATAATCAGACTCATGGTTGAAATCAATCATTTAGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCAGGAAATAATCAGACTCATGGTTGAAATCAATCATTTAGAAA  239

seq1  CAAATAGAACAATACAAGGAATCAACAAAACCAAGAGCTGGTTCTTTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAACAATACAAGGAATCAACAAAACCAAGAGCTGGTTCTTTGAG  289

seq1  AAAATCAACAAGATAGACACACTAACTTTAGTCAAACCATAGCCTAACTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAACAAGATAGACACACTAACTTTAGTCAAACCATAGCCTAACTA  339

seq1  ACTAAAAAGCATAGAGACAATTAACCAAATTAACAAACTCAGAAGTGAAA  399
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTAAAAAGCATAGAGACAATTAACCAAATTAACAAACTCAGAAGTAAAA  389

seq1  AGGGAAGTATAAAAACAGACACTGAGAAATTTTTAAAAATCATTACGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTATAAAAACAGACACTGAGAAATTTTTAAAAATCATTACGTCT  439

seq1  TGCTTCAAAAGCCTCTACTCAACAAAATTGAAAAATGAAGAAAAGGATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAAAAGCCTCTACTCAACAAAATTGAAAAATGAAGAAAAGGATTA  489

seq1  TAAATTGAGGCTCCCTGGTTTTATAGGTCTGTTTTATAAAGGAATTAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAGGCTCCCTGGTTTTATAGGTCTGTTTTATAAAGGAATTAATT  539

seq1  GTAAATTCTATGCATGATATAAACCACACACTTCATTGGTACTGTTTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTCTATGCATGATATAAACCACACACTTCATTGGTACTGTTTAAA  589

seq1  GGAACTAAGAACTCTGTGATGCTTTTTAGAAATAATATTGAAATAATCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAAGAACTCTGTGATGCTTTTTAGAAATAATATTGAAATAATCAT  639

seq1  TCCTTTAGTAGATATCTCCTGTATTTATCCTATAATGTCAAATATACTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGTAGATATCTCCTGTATTTATCCTATAATGTCAAATATACTAT  689

seq1  TATACTTCTCTCTATATACACAGACTTTAAAATGATAGCTATTTTGACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCTCTCTATATACACAGACTTTAAAATGATAGCTATTTTGACAC  739

seq1  TGTAGTATAAATTGTATACTATATTACTTATATAATATTATATATTATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTATAAATTGTATACTATATTACTTATATAATATTATATATTATAT  789

seq1  ATTATATTATATTACTATATTATATATTACTTATATAGTATTATATATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTATATTACTATATTATATATTACTTATATAGTATTATATATTG  839

seq1  TACACTTATAATATACTTTATATTTTCACTACAATGTCAAATATACTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTATAATATACTTTATATTTTCACTACAATGTCAAATATACTTAT  889

seq1  GATAGTATAAGTATAGCTTTCATTTACATATATATACATATACATGTATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATAAGTATAGCTTTCATTTACATATATATACATATACATGTATA  939

seq1  TATATGCATATATATACATATACATGTATATATACATATATATGTATATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCATATATATACATATACATGTATATATACATATATATGTATATA  989

seq1  TATATATATATATGTATGTATAAATGAATGATTGCAGTTTATTCCAGCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATGTATGTATAAATGAATGATTGCAGTTTATTCCAGCAA  1039

seq1  AAGGATGTAAACACCAAAGAATTC  1073
      ||||||||||||||||||||||||
seq2  AAGGATGTAAACACCAAAGAATTC  1063