BAC Information

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BAC

Clone NameB6Ng01-141F22
Chromosome6 (Build37)
Map Location 27,469,048 - 27,625,622
singlet/doubletdoublet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141F22.bB6Ng01-141F22.g
ACCDH939845DH939846
length1,099903
definitionDH939845|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F22, 5' end.DH939846|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,624,504 - 27,625,622)(27,469,048 - 27,469,680)
sequence
gaattcaatctctagaacccacatataggtagaaggagagaacgaacccc
ctaaaagttgtattaatacatccagatatatgtacttatatcacacacac
acacatacacacactcacacatacacacaaaaaataagtttatgtaaatt
ttctaagttcttaaagagagtgtgtctacatagctagttacaggccaacg
agggctacaaagtaaatatttttctacttttcaaagcacttgattaaaaa
tagtaataaggattttttcctttggtcatttgttcaattcatgtcaatta
tatgatgtatccactacaaaatccaacagaatatttgatttggttgataa
gagtatactccaaagagcagaggtagtgacttagtatatgtctaaatcaa
gccatcttgggggtatttgcagtgttatttggggagcacactcagtttat
gatccctgtaagatggccccattatgatattttgaatacagatgtgttca
tgagcttaaaagtaagaaaaatatactaccagtattgatataaaatacat
gtgcatgcaaatggcaagtaagccagcaatgtagatgtttctgttcacca
cagagagtatactggtagatggaatcagtatcatacatagagggagtgat
gaaaaatgaggccaggtcaagggcacaaaggaaagcagtaagaaaagtta
ccagtcaggaaagtgtggcattgcatcagcagctgagagaaggcatgaaa
agtcggagagttcttagcagccctctggctacacatggtccaagaataaa
agggtaagatgttcttttacattgaataactagagggtttatggtgttct
tacaggagagttttaatggactgatggacaatgaagccagagaacagtga
attaaaaagcaagcgaggagatgaagtgcagcagcaaggggagataattc
ttactgaagtcttgtctgactatgaaatcatgatctcttgacatgatgcc
cttggcaggcacaaaatcatcttctggatgattctgataaaccagaagtt
tcaatttcagtcaggaaaagaaatgcaccactcaactggaggtcattca
gaattcaatcaaaagaagatcatgtgagctctcatgtatgtattagttcg
tatctgctggattgataccaaatttaaaattatcccttgctttcaaaaag
gtatactgttaagcacagtgtttccattagatgctgtactggctggtttt
gtgtgtcaatttgacacaagctggagttatcacagagaaaggagcttcag
ttggggaaatgcctccatgagatccagctataaggcattttctcaattag
tgatcaagggggaagggccccttgtgggtgggaccatctctgggttggta
gtcttgggttctataagagagcaggctgagcaagccagaggaagcaagcc
agtaaagaacatctctccatggcctctgcatcagctcctgcttcctgacc
tgtttaagtttcagtcctgacctctttggtgatgtaagccaaataaaccc
cttcctccccagcttgctccatggtcatgatgttttgtccaggaatagaa
acccggactaagacaaattggtactagcatagtggggtattcctgtgata
acctggccatgttttcagaaagactgtggaagaagtttgggctagaagat
tggtgttaaagagctttgtgggatgttgtttaggagcttggaagatactg
ttgagaacagtgcagaagatggagccctggcttgtgaaatttcagaggaa
aaattaaagactcttttcaggatcattgttgctttgattgtgaagattct
gtggttgtggttagctggggctgaagaatcagctgtgattaacaagatac
caaaatccactaaagtgaacctttgcattactggggactattgatgctgg
ttagctggagctaagaaattagtgtgattatgaagagaccagcggtctcg
ctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_27624504_27625622
seq2: B6Ng01-141F22.b_46_1144 (reverse)

seq1  TGAATGACCTTCAGTTGGGTTTGTTGCATTTTTTTTTTCCTGACTGAAAT  50
      |||||||||| |||||| |  || ||||  ||| ||||||||||||||||
seq2  TGAATGACCTCCAGTTGAG--TGGTGCA--TTTCTTTTCCTGACTGAAAT  46

seq1  TTGAAAACTTCTTGGGTTTTATCAGGAATCACTCAG-AGATGATATTGTG  99
      |   ||||||||   | ||||||| ||||||  ||| ||||||| |||||
seq2  T--GAAACTTCT---GGTTTATCA-GAATCATCCAGAAGATGATTTTGTG  90

seq1  CCCTTCCAAGGGCATCATGTCAAGAGATTCATGATATCAATATGTCAGAC  149
       ||| |||||||||||||||||||||| ||||||| || ||| |||||||
seq2  -CCTGCCAAGGGCATCATGTCAAGAGA-TCATGATTTC-ATA-GTCAGAC  136

seq1  AAGACTTTCAGTAAGAATTATCTCCCCTTGCCGGCTGCACTTCATCTCCT  199
      ||||| |||||||||||||||||||||||| | |||||||||||||||||
seq2  AAGAC-TTCAGTAAGAATTATCTCCCCTTG-CTGCTGCACTTCATCTCCT  184

seq1  CGCCTTTGCTTTTTAATTCACTGTTCTCTGGCTTCATTGTCCATCAGTCC  249
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CGC--TTGCTTTTTAATTCACTGTTCTCTGGCTTCATTGTCCATCAGTCC  232

seq1  ATTAAAACTTCTCTTGTTAAGGACACCATTAACCCTCTAGTTATTCAATG  299
      |||||||| |||| || |||| ||||||| ||||||||||||||||||||
seq2  ATTAAAAC-TCTCCTG-TAAGAACACCATAAACCCTCTAGTTATTCAATG  280

seq1  TAAAAGGAACATCTTACCCTTTTATTCTTGGACCATGTGTAGCCAGAGGG  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAA-GAACATCTTACCCTTTTATTCTTGGACCATGTGTAGCCAGAGGG  329

seq1  CTGCTAAGAACTCTCCGACTTTTCATGCCTTCTCTCAGCTGCTGATGCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGAACTCTCCGACTTTTCATGCCTTCTCTCAGCTGCTGATGCAA  379

seq1  TGCCACACTTTCCTGACTGGTAACTTTTCTTACTGCTTTCCTTTGTGCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACACTTTCCTGACTGGTAACTTTTCTTACTGCTTTCCTTTGTGCCC  429

seq1  TTGACCTGGCCTCATTTTTCATCACTCCCTCTATGTATGATACTGATTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTGGCCTCATTTTTCATCACTCCCTCTATGTATGATACTGATTCC  479

seq1  ATCTACCAGTATACTCTCTGTGGTGAACAGAAACATCTACATTGCTGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCAGTATACTCTCTGTGGTGAACAGAAACATCTACATTGCTGGCT  529

seq1  TACTTGCCATTTGCATGCACATGTATTTTATATCAATACTGGTAGTATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCATTTGCATGCACATGTATTTTATATCAATACTGGTAGTATAT  579

seq1  TTTTCTTACTTTTAAGCTCATGAACACATCTGTATTCAAAATATCATAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACTTTTAAGCTCATGAACACATCTGTATTCAAAATATCATAAT  629

seq1  GGGGCCATCTTACAGGGATCATAAACTGAGTGTGCTCCCCAAATAACACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCATCTTACAGGGATCATAAACTGAGTGTGCTCCCCAAATAACACT  679

seq1  GCAAATACCCCCAAGATGGCTTGATTTAGACATATACTAAGTCACTACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATACCCCCAAGATGGCTTGATTTAGACATATACTAAGTCACTACCT  729

seq1  CTGCTCTTTGGAGTATACTCTTATCAACCAAATCAAATATTCTGTTGGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTTGGAGTATACTCTTATCAACCAAATCAAATATTCTGTTGGAT  779

seq1  TTTGTAGTGGATACATCATATAATTGACATGAATTGAACAAATGACCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTGGATACATCATATAATTGACATGAATTGAACAAATGACCAAA  829

seq1  GGAAAAAATCCTTATTACTATTTTTAATCAAGTGCTTTGAAAAGTAGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATCCTTATTACTATTTTTAATCAAGTGCTTTGAAAAGTAGAAA  879

seq1  AATATTTACTTTGTAGCCCTCGTTGGCCTGTAACTAGCTATGTAGACACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACTTTGTAGCCCTCGTTGGCCTGTAACTAGCTATGTAGACACA  929

seq1  CTCTCTTTAAGAACTTAGAAAATTTACATAAACTTATTTTTTGTGTGTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTAAGAACTTAGAAAATTTACATAAACTTATTTTTTGTGTGTAT  979

seq1  GTGTGAGTGTGTGTATGTGTGTGTGTGTGATATAAGTACATATATCTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTGTGTGTATGTGTGTGTGTGTGATATAAGTACATATATCTGGA  1029

seq1  TGTATTAATACAACTTTTAGGGGGTTCGTTCTCTCCTTCTACCTATATGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAATACAACTTTTAGGGGGTTCGTTCTCTCCTTCTACCTATATGT  1079

seq1  GGGTTCTAGAGATTGAATTC  1119
      ||||||||||||||||||||
seq2  GGGTTCTAGAGATTGAATTC  1099

seq1: chr6_27469048_27469680
seq2: B6Ng01-141F22.g_70_703

seq1  GAATTCAATCAAAAGAAGATCATGTGAGCTCTCATGTATGTATTAGTTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAAAAGAAGATCATGTGAGCTCTCATGTATGTATTAGTTCG  50

seq1  TATCTGCTGGATTGATACCAAATTTAAAATTATCCCTTGCTTTCAAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTGGATTGATACCAAATTTAAAATTATCCCTTGCTTTCAAAAAG  100

seq1  GTATACTGTTAAGCACAGTGTTTCCATTAGATGCTGTACTGGCTGGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTGTTAAGCACAGTGTTTCCATTAGATGCTGTACTGGCTGGTTTT  150

seq1  GTGTGTCAATTTGACACAAGCTGGAGTTATCACAGAGAAAGGAGCTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAATTTGACACAAGCTGGAGTTATCACAGAGAAAGGAGCTTCAG  200

seq1  TTGGGGAAATGCCTCCATGAGATCCAGCTATAAGGCATTTTCTCAATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAATGCCTCCATGAGATCCAGCTATAAGGCATTTTCTCAATTAG  250

seq1  TGATCAAGGGGGAAGGGCCCCTTGTGGGTGGGACCATCTCTGGGTTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGGGGGAAGGGCCCCTTGTGGGTGGGACCATCTCTGGGTTGGTA  300

seq1  GTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGAGGAAGCAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGAGGAAGCAAGCC  350

seq1  AGTAAAGAACATCTCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAACATCTCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACC  400

seq1  TGTTTAAGTTTCAGTCCTGACCTCTTTGGTGATGTAAGCCAAATAAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGTTTCAGTCCTGACCTCTTTGGTGATGTAAGCCAAATAAACCC  450

seq1  CTTCCTCCCCAGCTTGCTCCATGGTCATGATGTTTTGTCCAGGAATAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCCAGCTTGCTCCATGGTCATGATGTTTTGTCCAGGAATAGAA  500

seq1  ACCCGGACTAAGACAAATTGGTACTAGCATAGTGGGGTATTCCTGTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGACTAAGACAAATTGGTACTAGCATAGTGGGGTATTCCTGTGATA  550

seq1  ACCTGGCCATGTTTTCAGAAAGACTGTGGAAGAAGTTTGGGCTAGAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCCATGTTTTCAGAAAGACTGTGGAAGAAGTTTGGGCTAGAAGAT  600

seq1  TGGTGTT-AAGAGCTTTGTGGGATGTTGTTTAGG  633
      ||||||| ||||||||||||||||||||||||||
seq2  TGGTGTTAAAGAGCTTTGTGGGATGTTGTTTAGG  634