BAC Information

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BAC

Clone NameB6Ng01-141P04
Chromosome6 (Build37)
Map Location 36,570,690 - 36,722,118
singlet/doubletdoublet
Overlap geneLOC100039370, Ptn, LOC100039514
Upstream geneLOC100039327, 9330158H04Rik, Chrm2, EG620863
Downstream geneDgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141P04.bB6Ng01-141P04.g
ACCDH940272DH940273
length1,0001,179
definitionDH940272|Mus musculus domesticus DNA, BAC clone: B6Ng01-141P04, 5' end.DH940273|Mus musculus domesticus DNA, BAC clone: B6Ng01-141P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,721,115 - 36,722,118)(36,570,690 - 36,571,879)
sequence
gaattcattttgaaacagcgaacagtttgcctctgctccctctcagccct
gctactgacatgactcaagtcttgagactaccatgtcagacatgttattg
tgcatctctcctgttcaggaatgctcccctttgtccagcacactgcctgt
cagcaccctatgtgtggtggaccacagtgtaccttcctggggacaattct
ggtgctgtctctaacagtccttccatgagaacaggatctcttaaacactc
agctccgctctttatgagtaagctttagcattcacctcataatgggcttc
tgataaagactaggtgaaatacaggcatgcaaacaaaacatttagtagta
tgactgcatctaagagaaaaaagaaaacccaaacaatcacagcaaaaatt
cagcgaatggcagctagtattaagaatgttgttagaaggtttgttatagt
ttaaaggcatgtagggtgggtattgactgcctgcagagaatggtcctaaa
gattagagactggctgtacatacagcagatgatcagtgttctgcctgaga
gccctcacagggaggtgacagaaacccacttgaaacatgtaggaaacctc
tcaagaacttttcattaaccccagggacagggaactcccttttgttctca
gaatttaatgagacactgtttagatttcccaaatttcttctaaggcgtct
gaagcacaagccttcccaagaatttgaacctaggaggtttcatgtagaat
ggaaaggactgctatactgcttggtgcatatatatatatacatatatatt
gcttagcttgggtgcttctagctaggcttggagccatgttatttccctga
attcctggatatattactaacctgccttctttctttgctcccaagctgag
ttctgagcaacaaccaaaacaatggttgttttgtttgcccctttgcaaat
cctgcaagggaactcaagtctcctgtaggaggtgttggaaaagcagagca

gaattctttgttcagctctgagccccattttttaattgggttatttgatt
ttctggagtccatcttcttgagttgtttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttatttacggtgtcttttgccttgcagaagctttgcaatttta
tgaggtcccatttatcgattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatctttgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatgatttatt
taacatgaaacctctttgaattatgactttttgaggaattttaacactga
atactgaatgtatatttaattaaatttagatagtcactttttagagtaat
aatagcttgtacttaggtcttttaatagcttatatcttttagagataact
acagataaaatatgatgctggggcatgtttcaaaatgtgggaagaagttg
gtaagattaaaataaagtaattgttcctaataaattaatcattatcaaag
ggtgatggatagctgggagttttcctacataactttgacctacttttgtg
catacatatgaattttttctctttttttggtataaaaatatttttatatt
tttcccattttgttaaaatagattcttttgttacacaatttatcattttt
ttaaattttatttttaatttcttttttatacgccatattccatttccctg
ccccccatccaccctctgactgttccacatcccacacctcctcactatcc
caccccatctccatgtggatgcccctatcccccatcccacctgggcttaa
atgccctgggacctccaatctcttgaggtaggtgcatcatctctggatga
catagacttggaaatcctctacttttatgtgtgttgattttttcatatga
aaattttttcttttagaatcatcaagtgagggaatagagttagcttcttt
ggtttaaagcacttcaatggtctttgcagagacctgcttatttgcctacc
aatggagttaaaaactatctgaatccagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36721115_36722118
seq2: B6Ng01-141P04.b_47_1046 (reverse)

seq1  TGCTCTGCCTTTTCCAACACCTCCCTACAGG-GGCTTGAGTTCCCTTGCA  49
      ||||||| |||||||||||||| |||||||| | ||||||||||||||||
seq2  TGCTCTG-CTTTTCCAACACCT-CCTACAGGAGACTTGAGTTCCCTTGCA  48

seq1  GGATTTGCAAAGGGGCAAAACAAAACAACCATTGGTTTTGGTTGTTGCTC  99
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  GGATTTGCAAAGGGGC-AAACAAAACAACCATT-GTTTTGGTTGTTGCTC  96

seq1  AGAACTCAGCTTGGGAGCAAAGAAAGAAGGCAGGGTTAGTAATATATCCA  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGAACTCAGCTTGGGAGCAAAGAAAGAAGGCA-GGTTAGTAATATATCCA  145

seq1  GGAATTCAGGGAAATAACATGGCTCCAAGCCTAGCTAGAAGCACCCAAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAGGGAAATAACATGGCTCCAAGCCTAGCTAGAAGCACCCAAGC  195

seq1  TAAGCAATATATATGTATATATATATATGCACCAAGCAGTATAGCAGTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATATATATGTATATATATATATGCACCAAGCAGTATAGCAGTCC  245

seq1  TTTCCATTCTACATGAAACCTCCTAGGTTCAAATTCTTGGGAAGGCTTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTCTACATGAAACCTCCTAGGTTCAAATTCTTGGGAAGGCTTGT  295

seq1  GCTTCAGACGCCTTAGAAGAAATTTGGGAAATCTAAACAGTGTCTCATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGACGCCTTAGAAGAAATTTGGGAAATCTAAACAGTGTCTCATTA  345

seq1  AATTCTGAGAACAAAAGGGAGTTCCCTGTCCCTGGGGTTAATGAAAAGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAGAACAAAAGGGAGTTCCCTGTCCCTGGGGTTAATGAAAAGTT  395

seq1  CTTGAGAGGTTTCCTACATGTTTCAAGTGGGTTTCTGTCACCTCCCTGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGGTTTCCTACATGTTTCAAGTGGGTTTCTGTCACCTCCCTGTG  445

seq1  AGGGCTCTCAGGCAGAACACTGATCATCTGCTGTATGTACAGCCAGTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTCAGGCAGAACACTGATCATCTGCTGTATGTACAGCCAGTCTC  495

seq1  TAATCTTTAGGACCATTCTCTGCAGGCAGTCAATACCCACCCTACATGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTAGGACCATTCTCTGCAGGCAGTCAATACCCACCCTACATGCC  545

seq1  TTTAAACTATAACAAACCTTCTAACAACATTCTTAATACTAGCTGCCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTATAACAAACCTTCTAACAACATTCTTAATACTAGCTGCCATT  595

seq1  CGCTGAATTTTTGCTGTGATTGTTTGGGTTTTCTTTTTTCTCTTAGATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAATTTTTGCTGTGATTGTTTGGGTTTTCTTTTTTCTCTTAGATGC  645

seq1  AGTCATACTACTAAATGTTTTGTTTGCATGCCTGTATTTCACCTAGTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATACTACTAAATGTTTTGTTTGCATGCCTGTATTTCACCTAGTCTT  695

seq1  TATCAGAAGCCCATTATGAGGTGAATGCTAAAGCTTACTCATAAAGAGCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAGCCCATTATGAGGTGAATGCTAAAGCTTACTCATAAAGAGCG  745

seq1  GAGCTGAGTGTTTAAGAGATCCTGTTCTCATGGAAGGACTGTTAGAGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGTGTTTAAGAGATCCTGTTCTCATGGAAGGACTGTTAGAGACA  795

seq1  GCACCAGAATTGTCCCCAGGAAGGTACACTGTGGTCCACCACACATAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGAATTGTCCCCAGGAAGGTACACTGTGGTCCACCACACATAGGG  845

seq1  TGCTGACAGGCAGTGTGCTGGACAAAGGGGAGCATTCCTGAACAGGAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACAGGCAGTGTGCTGGACAAAGGGGAGCATTCCTGAACAGGAGAG  895

seq1  ATGCACAATAACATGTCTGACATGGTAGTCTCAAGACTTGAGTCATGTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAATAACATGTCTGACATGGTAGTCTCAAGACTTGAGTCATGTCA  945

seq1  GTAGCAGGGCTGAGAGGGAGCAGAGGCAAACTGTTCGCTGTTTCAAAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGGCTGAGAGGGAGCAGAGGCAAACTGTTCGCTGTTTCAAAATG  995

seq1  AATTC  1004
      |||||
seq2  AATTC  1000

seq1: chr6_36570690_36571879
seq2: B6Ng01-141P04.g_69_1247

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATTGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATTGGGTTATTTGATT  50

seq1  TTCTGGAGTCCATCTTCTTGAGTTGTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCATCTTCTTGAGTTGTTTATATATATTGGATATTAGTCCC  100

seq1  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTTACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTTACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTA  200

seq1  TGAGGTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTATTCAGGAATTTTTCCCCTGTACCCATATCTTTGAGGCTTTTCCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATTTTTCCCCTGTACCCATATCTTTGAGGCTTTTCCCTAC  300

seq1  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAA  350

seq1  TCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATGATTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATGATTTATT  400

seq1  TAACATGAAACCTCTTTGAATTATGACTTTTTGAGGAATTTTAACACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGAAACCTCTTTGAATTATGACTTTTTGAGGAATTTTAACACTGA  450

seq1  ATACTGAATGTATATTTAATTAAATTTAGATAGTCACTTTTTAGAGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAATGTATATTTAATTAAATTTAGATAGTCACTTTTTAGAGTAAT  500

seq1  AATAGCTTGTACTTAGGTCTTTTAATAGCTTATATCTTTTAGAGATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTGTACTTAGGTCTTTTAATAGCTTATATCTTTTAGAGATAACT  550

seq1  ACAGATAAAATATGATGCTGGGGCATGTTTCAAAATGTGGGAAGAAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAAATATGATGCTGGGGCATGTTTCAAAATGTGGGAAGAAGTTG  600

seq1  GTAAGATTAAAATAAAGTAATTGTTCCTAATAAATTAATCATTATCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTAAAATAAAGTAATTGTTCCTAATAAATTAATCATTATCAAAG  650

seq1  GGTGATGGATAGCTGGGAG-TTTCCTACATAACTTTGACCTACTTTTGTG  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTGATGGATAGCTGGGAGTTTTCCTACATAACTTTGACCTACTTTTGTG  700

seq1  CATACATATGAATTTTTTCTCTTTTTTTGGTATAAAAATATTTTTATATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATATGAATTTTTTCTCTTTTTTTGGTATAAAAATATTTTTATATT  750

seq1  TTTCCCATTTTGTTAAAATAGATTCTTTTGTTACACAATTTATCATTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATTTTGTTAAAATAGATTCTTTTGTTACACAATTTATCATTTTT  800

seq1  TTAAATTTTATTTTTAATTTCTTTTTTATACGCCATATTCCA-TTCCCTG  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAAATTTTATTTTTAATTTCTTTTTTATACGCCATATTCCATTTCCCTG  850

seq1  CCCCCCATCCACCCTCTGACTGTTCCACATCCCACACCTCCTCACTATCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATCCACCCTCTGACTGTTCCACATCCCACACCTCCTCACTATCC  900

seq1  CACCCCATCTCCATGTGGATGCCCCTATCCCCCATCCCACCTGGCCTTAA  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACCCCATCTCCATGTGGATGCCCCTATCCCCCATCCCACCTGGGCTTAA  950

seq1  ATGCCCTGGGACCTCCAATCTCTTGAGGGTTAGGTGCATCATCTCTGAAT  998
      ||||||||||||||||||||||||||||  ||||||||||||||||| ||
seq2  ATGCCCTGGGACCTCCAATCTCTTGAGG--TAGGTGCATCATCTCTGGAT  998

seq1  GAACATAGACCTGGAAATCCTCTAC-TATATGTGTGTTGAATTTTTTCAT  1047
      | |||||||| |||||||||||||| | ||||||||||| ||||||||||
seq2  G-ACATAGACTTGGAAATCCTCTACTTTTATGTGTGTTG-ATTTTTTCAT  1046

seq1  AATGAAAATTTTTCTTTTAAGAATCATCAGGTGAGGGGAATAGAGTTAGC  1097
       ||||||||||||  ||| |||||||||| |||| |||||||||||||||
seq2  -ATGAAAATTTTTTCTTTTAGAATCATCAAGTGA-GGGAATAGAGTTAGC  1094

seq1  -TCTATGGTTTAAAGCAC-TCAATTGTTCTTGCAGAGGACCTGGGTTTAG  1145
       ||| ||||||||||||| ||||| ||  ||||||| |||||  | ||| 
seq2  TTCTTTGGTTTAAAGCACTTCAATGGTCTTTGCAGA-GACCT--GCTTAT  1141

seq1  TTGCCATCATCCACATGGTAGCTCAAAACTATCTGTAACTCCAGT  1190
      |||||    | |  |||| || | |||||||||||  | ||||||
seq2  TTGCC----TACCAATGG-AGTTAAAAACTATCTG--AATCCAGT  1179