BAC Information

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BAC

Clone NameB6Ng01-142D21
Chromosome6 (Build37)
Map Location 115,235,462 - 115,396,556
singlet/doubletdoublet
Overlap genePparg
Upstream geneSlc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4
Downstream geneTsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142D21.bB6Ng01-142D21.g
ACCDH940488DH940489
length1,1401,017
definitionDH940488|Mus musculus domesticus DNA, BAC clone: B6Ng01-142D21, 5' end.DH940489|Mus musculus domesticus DNA, BAC clone: B6Ng01-142D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,395,409 - 115,396,556)(115,235,462 - 115,236,481)
sequence
gaattcactgtgatatttattagtgcaagcatacctttaaaaaactctta
acaatactaccagctctgagaatttaaaaatattaaaatttttgaccata
aactgtggaacctacaaagtctaagtagggaattctatccttcaaagaga
aattgaagatgcttgttctggaagtccagacatagctgactgtggcattc
ttaatgcctttgagaatcctggctccatgtggaagcccagctcagctctt
ctcctgatgagcacggcagcacagcaccttctcagttctgagggcaactc
cccaggaaagtcctgccagggattctttgttttgtctttgatgttgttat
ggaattctgttactccttgtgagatcagcagtatcccaaagaataggtcc
caatgtagaacctgatgcaattgaaaccccttacctctcaaatggtccca
agtactgtggttgtgccaatgctggggattagcagtaagttaatttgcaa
agcctactccatgctagtgaaaaattttgattgccataataataaaaaaa
attagcttaattcctatgacatatgcctaaagtaaatcattttgggaaga
tttgatatccttcaattctaaagagtaatcatccggcctatcatttatga
atttaatacatatacaaatttgggtttttttgagtcaaggtctcattgta
tagtgcttgaactcaaagagatgcacctgcctctgcctcctgagtgctgg
gactaatagtgtatgccactatgcccaaccttgcatacaaattcttaatc
tgaatatatacagaatatatatgtaagaacttgcttttactgttattccc
ctcaaattttatgataagcattttttcatgttatttaactttctcaagag
gaagataggagaatatcactggtgtttttctgtaatttatttactgactt
taccagtactctattttttttaggtctatagaacaacgtgttttttcatc
tgctttaacagtcaactctttggattattgggcagtgacagtgtatgaag
tttgtaagttattatttcagaaagtatatacatgactccaatgtcttttc
tatttggccttcaaaaagaattcttactttgtttagtatt
gaattcatttacagtttcatagttgaaagcaacaattagtcttattgcct
gtttacagatgagaaaactgaggcccaggtaccttggacatttaccacag
tcatgaagggagttagtgacatagacaaatgaatgagccttaatactgtc
tttagggtctttagggttaggacttgtccttcctgaaacaaacagaatgg
gtttcatttctaaggagaggtgtatagaggcaggtgataggccaggagga
agtgggaagatattgttagccaatgaaaagagcctgaatcaagtctgagt
ttgcatccaggctctgctaattattgactgatttgaccttgcaagcaatt
agtttttctgtctcaaaatgcccttttctgggtgagtttaaggattagat
gaagtaaatgtccactcctaaaaatggctatttctgaggtcatcacaata
aatcccacctctgtctcaaagatcacctagttgccttccatgtgactcct
cccaaaatagccaagtgcctttctccacctcccagatcagtggtcctcta
gggcgatttaaacccaactgaaatgacctaaggctatagctgtagaagaa
ttagagttaagggtggacacctggagaaacagatgcagctgccaggcttc
ccactggcaatgatatattgtgagtgcagatgttcgagcatgcacgtgag
ctggtgagcttgcaagtgagcgtgtgtgcactagtgacacacacacatac
acacacacacacacacacacacacatatagagtaacctttgctggtatag
aatgaaaaatctcattatactcttgtgaacttttaaatttaatgtaactt
aattttattaagagagactctgcagccttggttggcctggaagttaccct
gtagaccaggctagccttaattcagagattcactggcgcttctctcagtc
agtctttttttttttttaattttaagttattttttactttattaatttta
atggggggggaaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_115395409_115396556
seq2: B6Ng01-142D21.b_46_1185 (reverse)

seq1  AATACATAAACAAAAGTAAGAATCATTTTTTTAAAGG-CAAATAG-AAAG  48
      ||||| ||||| |||||||||||  | ||||| |||| ||||||| ||||
seq2  AATAC-TAAAC-AAAGTAAGAAT--TCTTTTTGAAGGCCAAATAGAAAAG  46

seq1  ACATTGGAGTCAATGTATATAC-TTCTGAAATAGTAACCTACAAACTTCA  97
      ||||||||||| |||||||||| |||||||||| |||| |||||||||||
seq2  ACATTGGAGTC-ATGTATATACTTTCTGAAATAATAACTTACAAACTTCA  95

seq1  TTACACTGTCACTGCACAATAATCCAAAGAGTTGACTGTTAAAAGCAGAT  147
       |||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  -TACACTGTCACTGCCCAATAATCCAAAGAGTTGACTGTT-AAAGCAGAT  143

seq1  GGAAAATACACGTTGTTCTATAGACCCTAAAAAAAATAGAGTACTGGTAA  197
       ||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  -GAAAAAACACGTTGTTCTATAGA-CCTAAAAAAAATAGAGTACTGGTAA  191

seq1  AGTCAGTAAATAAATTAACAGAAAAACACCCAGTGATATTCTCCTATCTT  247
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  AGTCAGTAAATAAATT-ACAGAAAAACA-CCAGTGATATTCTCCTATCTT  239

seq1  CCTCTTGAGAAAGTTAAATAACATGAAAAAATGCTTATCATAAAATTTGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGAAAGTTAAATAACATGAAAAAATGCTTATCATAAAATTTGA  289

seq1  GGGGAATAACAGTAAAAGCAAGTTCTTACATATATATTCTGTATATATTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATAACAGTAAAAGCAAGTTCTTACATATATATTCTGTATATATTC  339

seq1  AGATTAAGAATTTGTATGCAAGGTTGGGCATAGTGGCATACACTATTAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGAATTTGTATGCAAGGTTGGGCATAGTGGCATACACTATTAGT  389

seq1  CCCAGCACTCAGGAGGCAGAGGCAGGTGCATCTCTTTGAGTTCAAGCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTCAGGAGGCAGAGGCAGGTGCATCTCTTTGAGTTCAAGCACT  439

seq1  ATACAATGAGACCTTGACTCAAAAAAACCCAAATTTGTATATGTATTAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGAGACCTTGACTCAAAAAAACCCAAATTTGTATATGTATTAAA  489

seq1  TTCATAAATGATAGGCCGGATGATTACTCTTTAGAATTGAAGGATATCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATGATAGGCCGGATGATTACTCTTTAGAATTGAAGGATATCAA  539

seq1  ATCTTCCCAAAATGATTTACTTTAGGCATATGTCATAGGAATTAAGCTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCAAAATGATTTACTTTAGGCATATGTCATAGGAATTAAGCTAA  589

seq1  TTTTTTTTATTATTATGGCAATCAAAATTTTTCACTAGCATGGAGTAGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATTATTATGGCAATCAAAATTTTTCACTAGCATGGAGTAGGC  639

seq1  TTTGCAAATTAACTTACTGCTAATCCCCAGCATTGGCACAACCACAGTAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATTAACTTACTGCTAATCCCCAGCATTGGCACAACCACAGTAC  689

seq1  TTGGGACCATTTGAGAGGTAAGGGGTTTCAATTGCATCAGGTTCTACATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACCATTTGAGAGGTAAGGGGTTTCAATTGCATCAGGTTCTACATT  739

seq1  GGGACCTATTCTTTGGGATACTGCTGATCTCACAAGGAGTAACAGAATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTATTCTTTGGGATACTGCTGATCTCACAAGGAGTAACAGAATTC  789

seq1  CATAACAACATCAAAGACAAAACAAAGAATCCCTGGCAGGACTTTCCTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAACATCAAAGACAAAACAAAGAATCCCTGGCAGGACTTTCCTGG  839

seq1  GGAGTTGCCCTCAGAACTGAGAAGGTGCTGTGCTGCCGTGCTCATCAGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGCCCTCAGAACTGAGAAGGTGCTGTGCTGCCGTGCTCATCAGGA  889

seq1  GAAGAGCTGAGCTGGGCTTCCACATGGAGCCAGGATTCTCAAAGGCATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTGAGCTGGGCTTCCACATGGAGCCAGGATTCTCAAAGGCATTA  939

seq1  AGAATGCCACAGTCAGCTATGTCTGGACTTCCAGAACAAGCATCTTCAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCACAGTCAGCTATGTCTGGACTTCCAGAACAAGCATCTTCAAT  989

seq1  TTCTCTTTGAAGGATAGAATTCCCTACTTAGACTTTGTAGGTTCCACAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGAAGGATAGAATTCCCTACTTAGACTTTGTAGGTTCCACAGT  1039

seq1  TTATGGTCAAAAATTTTAATATTTTTAAATTCTCAGAGCTGGTAGTATTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTCAAAAATTTTAATATTTTTAAATTCTCAGAGCTGGTAGTATTG  1089

seq1  TTAAGAGTTTTTTAAAGGTATGCTTGCACTAATAAATATCACAGTGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTTTTTTAAAGGTATGCTTGCACTAATAAATATCACAGTGAATT  1139

seq1  C  1148
      |
seq2  C  1140

seq1: chr6_115235462_115236481
seq2: B6Ng01-142D21.g_67_1083

seq1  GAATTCATTTACAGTTTCATAGTTGAAAGCAACAATTAGTCTTATTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACAGTTTCATAGTTGAAAGCAACAATTAGTCTTATTGCCT  50

seq1  GTTTACAGATGAGAAAACTGAGGCCCAGGTACCTTGGACATTTACCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGATGAGAAAACTGAGGCCCAGGTACCTTGGACATTTACCACAG  100

seq1  TCATGAAGGGAGTTAGTGACATAGACAAATGAATGAGCCTTAATACTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGGGAGTTAGTGACATAGACAAATGAATGAGCCTTAATACTGTC  150

seq1  TTTAGGGTCTTTAGGGTTAGGACTTGTCCTTCCTGAAACAAACAGAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGTCTTTAGGGTTAGGACTTGTCCTTCCTGAAACAAACAGAATGG  200

seq1  GTTTCATTTCTAAGGAGAGGTGTATAGAGGCAGGTGATAGGCCAGGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTCTAAGGAGAGGTGTATAGAGGCAGGTGATAGGCCAGGAGGA  250

seq1  AGTGGGAAGATATTGTTAGCCAATGAAAAGAGCCTGAATCAAGTCTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGATATTGTTAGCCAATGAAAAGAGCCTGAATCAAGTCTGAGT  300

seq1  TTGCATCCAGGCTCTGCTAATTATTGACTGATTTGACCTTGCAAGCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCAGGCTCTGCTAATTATTGACTGATTTGACCTTGCAAGCAATT  350

seq1  AGTTTTTCTGTCTCAAAATGCCCTTTTCTGGGTGAGTTTAAGGATTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCTGTCTCAAAATGCCCTTTTCTGGGTGAGTTTAAGGATTAGAT  400

seq1  GAAGTAAATGTCCACTCCTAAAAATGGCTATTTCTGAGGTCATCACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAATGTCCACTCCTAAAAATGGCTATTTCTGAGGTCATCACAATA  450

seq1  AATCCCACCTCTGTCTCAAAGATCACCTAGTTGCCTTCCATGTGACTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACCTCTGTCTCAAAGATCACCTAGTTGCCTTCCATGTGACTCCT  500

seq1  CCCAAAATAGCCAAGTGCCTTTCTCCACCTCCCAGATCAGTGGTCCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATAGCCAAGTGCCTTTCTCCACCTCCCAGATCAGTGGTCCTCTA  550

seq1  GGGCGATTTAAACCCAACTGAAATGACCTAAGGCTATAGCTGTAGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGATTTAAACCCAACTGAAATGACCTAAGGCTATAGCTGTAGAAGAA  600

seq1  TTAGAGTTAAGGGTGGACACCTGGAGAAACAGATGCAGCTGCCAGGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTAAGGGTGGACACCTGGAGAAACAGATGCAGCTGCCAGGCTTC  650

seq1  CCACTGGCAATGATATATTGTGAGTGCAGATGTTCGAGCATGCACGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCAATGATATATTGTGAGTGCAGATGTTCGAGCATGCACGTGAG  700

seq1  CTGGTGAGCTTGCAAGTGAGCGTGTGTGCACTAGTGACACACACACATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGCTTGCAAGTGAGCGTGTGTGCACTAGTGACACACACACATAC  750

seq1  ACACACACACACACACACACACACATATAGAGTAACCTTTGCTGGTATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACATATAGAGTAACCTTTGCTGGTATAG  800

seq1  AATGAAAAATCTCATTATACTCTTGTGAACTTTTAAATTTTAATGTAACT  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATGAAAAATCTCATTATACTCTTGTGAACTTTTAAA-TTTAATGTAACT  849

seq1  TAATTTTATTAAGAGAGACTCTGCAGCCTTGGTTGGCCTGGAAGTTACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATTAAGAGAGACTCTGCAGCCTTGGTTGGCCTGGAAGTTACCC  899

seq1  TGTAGACCAGGCTAGCCTTAATTCAGAGATTCACCTGCCGCCTCCTCTCA  950
      ||||||||||||||||||||||||||||||||| ||| || || ||||| 
seq2  TGTAGACCAGGCTAGCCTTAATTCAGAGATTCA-CTGGCG-CTTCTCTC-  946

seq1  AGTCCAGTCTTTTTTTTTTTTAATTTTTAAGTTATTTTTTACTTTTATTA  1000
      ||| ||||||||||||||||| | |||||||||||||||||| |||||||
seq2  AGT-CAGTCTTTTTTTTTTTTTAATTTTAAGTTATTTTTTAC-TTTATTA  994

seq1  TTTTTAATGGGGGG---AGGGGG  1020
       |||||||||||||   ||||||
seq2  ATTTTAATGGGGGGGGAAGGGGG  1017