BAC Information

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BAC

Clone NameB6Ng01-142H23
Chromosome6 (Build37)
Map Location 46,875,018 - 47,095,604
singlet/doubletdoublet
Overlap geneCntnap2, LOC622745, LOC100041064
Upstream geneRbpsuh-rs3
Downstream geneLOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142H23.bB6Ng01-142H23.g
ACCDH940682DH940683
length1,1371,019
definitionDH940682|Mus musculus domesticus DNA, BAC clone: B6Ng01-142H23, 5' end.DH940683|Mus musculus domesticus DNA, BAC clone: B6Ng01-142H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,875,018 - 46,876,162)(47,094,604 - 47,095,604)
sequence
gaattcatgtaactccctatgcatctgacttaacgttaaggaggagttca
ggcaaaaggagtatcagcctcgtaatgacagtctagaatgtacgatacat
tgtactttcctgtcagtgttcatattctatctagggagtcactgacagtt
catctaaatcttaccataaagtctgaaagaaatccacagtggccactggg
aaattaatgtttagagataaaaaccaaggagcagacacaagtgatgcctt
agacaagcttggtgccttccatgaagttcaaagtcacaacctcagtattt
gtacagtaccgcatggggttattaaggagaaggcaagagacagtgggaga
aaccagtcagaggaagcttcagtggaggagcctagtggaggtactaggag
agaggtactaacctctgcttcatctggagaaaatgcagaacggctgcaca
tctgggaggaaatacccaagagaaacatgcagggtcctacacagcacttg
atttgcagaacacctccaaaggcagtttatttgcatttcttctggacttc
aaaacagcccgcagcaaaagtagaatatgggctttgatcagaagaggtcc
actggggagctcttctcctttgctgatgcaggctcccctgcagttctaag
atgaccacttctactattctgagaaattgcacctccacatgaaacttaac
ccttagcctatttcccctgcatgctgagtgcaaagttcactgttactttt
ttgataatttttatttatttttgaacattacatatattagtattgtattt
acaccattaacccttccttctcgacttctttccatgtttttcccattcct
cctcaaacccgtggcttcctcctcttgaattatctacatatgttcacatc
tacatacatataaatacaacctgttgagttcatctggcacttctcacata
ctttattgaggccaatacctatcagggaccaattcctagagagtgtactt
tctcttctcagcatcattaattgcctataactcttccagctagggtccaa
ccacttgtgagatttcatacattcatgttggccatgtcataatataaatt
atttttcagtcttgccaagttggtttataaaggtaac
gaattctgagatcaaggccagcctggtctccagagtgagttccaggacag
ccatggctgcacagaaaaagcctgcctcaaaaaaaaaaaaaggagcactt
gcagctactttcccaaagctaagtgtttccaaagatgcttgaaacagtta
tgtagagaacagcatggaccaagctgggagatggctgagcaccagatgcc
ctttgtgattcccagaatgctgtgaggtgaggcttctgtgacctcacagg
gtaaatccctgtcctagtaagagcagagtgcttagcctgaggacagctca
gagtccagcaaggagggctgggattcacactgagcacgtgtgtctgccca
ggcttgggctgttttctgggatggactacctgaaattcatcacgtgagta
gctcactcagtgaaaggcacttcagtggggtcttaagtgggggagataga
aatagggagagggacttgaagtggttttgactgaaggcatctcaccctaa
gaagagctagaaacctatctgaagtctcacaatattgggaatagccagtc
aagactgcaggaagatgaatccatcactcaacaggggggagagggcttgg
aaaagaagccatatatatctatatatatatatctgggtccaaagactttg
agcccccaagcctaggacaggaaggacagaacagtgctgtttgcaacacc
cacatttgaccatcactaatatcttttccaggggaaggaggcagagcatc
cctgccactgggtgtctgatcttccctgggggacttcagtccctggcaat
agcaatctttgcatggtacactcaagagagctgccccaatattacgaaaa
agatcaatgtcagtatcacggggaagcacacgacagctactctccttcta
attcttgtactaggcacagtttttactttgtattgtgtgttgtttgtgtg
ctacgcggtgtgcccatgggctccacttccaacatcactgtgtgtgaaaa
tgcctgagagagggacgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46875018_46876162
seq2: B6Ng01-142H23.b_36_1172

seq1  GAATTCATGTAACTCCCTATGCATCTGACTTAACGTTAAGGAGGAGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAACTCCCTATGCATCTGACTTAACGTTAAGGAGGAGTTCA  50

seq1  GGCAAAAGGAGTATCAGCCTCGTAATGACAGTCTAGAATGTACGATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGGAGTATCAGCCTCGTAATGACAGTCTAGAATGTACGATACAT  100

seq1  TGTACTTTCCTGTCAGTGTTCATATTCTATCTAGGGAGTCACTGACAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTCCTGTCAGTGTTCATATTCTATCTAGGGAGTCACTGACAGTT  150

seq1  CATCTAAATCTTACCATAAAGTCTGAAAGAAATCCACAGTGGCCACTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAATCTTACCATAAAGTCTGAAAGAAATCCACAGTGGCCACTGGG  200

seq1  AAATTAATGTTTAGAGATAAAAACCAAGGAGCAGACACAAGTGATGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATGTTTAGAGATAAAAACCAAGGAGCAGACACAAGTGATGCCTT  250

seq1  AGACAAGCTTGGTGCCTTCCATGAAGTTCAAAGTCACAACCTCAGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCTTGGTGCCTTCCATGAAGTTCAAAGTCACAACCTCAGTATTT  300

seq1  GTACAGTACCGCATGGGGTTATTAAGGAGAAGGCAAGAGACAGTGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTACCGCATGGGGTTATTAAGGAGAAGGCAAGAGACAGTGGGAGA  350

seq1  AACCAGTCAGAGGAAGCTTCAGTGGAGGAGCCTAGTGGAGGTACTAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTCAGAGGAAGCTTCAGTGGAGGAGCCTAGTGGAGGTACTAGGAG  400

seq1  AGAGGTACTAACCTCTGCTTCATCTGGAGAAAATGCAGAACGGCTGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACTAACCTCTGCTTCATCTGGAGAAAATGCAGAACGGCTGCACA  450

seq1  TCTGGGAGGAAATACCCAAGAGAAACATGCAGGGTCCTACACAGCACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGGAAATACCCAAGAGAAACATGCAGGGTCCTACACAGCACTTG  500

seq1  ATTTGCAGAACACCTCCAAAGGCAGTTTATTTGCATTTCTTCTGGACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGAACACCTCCAAAGGCAGTTTATTTGCATTTCTTCTGGACTTC  550

seq1  AAAACAGCCCGCAGCAAAAGTAGAATATGGGCTTTGATCAGAAGAGGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCCCGCAGCAAAAGTAGAATATGGGCTTTGATCAGAAGAGGTCC  600

seq1  ACTGGGGAGCTCTTCTCCTTTGCTGATGCAGGCTCCCCTGCAGTTCTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAGCTCTTCTCCTTTGCTGATGCAGGCTCCCCTGCAGTTCTAAG  650

seq1  ATGACCACTTCTACTATTCTGAGAAATTGCACCTCCACATGAAACTTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCACTTCTACTATTCTGAGAAATTGCACCTCCACATGAAACTTAAC  700

seq1  CCTTAGCCTATTTCCCCTGCATGCTGAGTGCAAAGTTCACTGTTACTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCCTATTTCCCCTGCATGCTGAGTGCAAAGTTCACTGTTACTTTT  750

seq1  TTGATAATTTTTATTTATTTTTGAACATTACATATATTAGTATTGTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATTTTTATTTATTTTTGAACATTACATATATTAGTATTGTATTT  800

seq1  ACACCATTAACCCTTCCTTCTCGACTTCTTTCCATGTTTTTCCCATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTAACCCTTCCTTCTCGACTTCTTTCCATGTTTTTCCCATTCCT  850

seq1  CCTCAAACCCGTGGCTTCCTCCTCTTGAATTATCTACATATGTTCACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACCCGTGGCTTCCTCCTCTTGAATTATCTACATATGTTCACATC  900

seq1  TACATACATATAAATACAACCTGTTGAGTTCATCTGGCACTTCTCACATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATATAAATACAACCTGTTGAGTTCATCTGGCACTTCTCACATA  950

seq1  CTTTATTGAGGCCAATAACCTATCAGGGAACCAATTCCTAGAAGAGTTGT  1000
      |||||||||||||||| ||||||||||| |||||||||||| |||| |||
seq2  CTTTATTGAGGCCAAT-ACCTATCAGGG-ACCAATTCCTAG-AGAG-TGT  996

seq1  ACTTCCTC-TCTCAGCAATCATTAATTGCCTATAACTCTT-CAGCTA-GG  1047
      |||| ||| ||||||| ||||||||||||||||||||||| |||||| ||
seq2  ACTTTCTCTTCTCAGC-ATCATTAATTGCCTATAACTCTTCCAGCTAGGG  1045

seq1  TCCAA-CACTTGTGAGATTTCATACATTCATGTTGG-CATGTCAATTAAT  1095
      ||||| |||||||||||||||||||||||||||||| |||||||  ||||
seq2  TCCAACCACTTGTGAGATTTCATACATTCATGTTGGCCATGTCA--TAAT  1093

seq1  AT-AATTATTTTTCAGGTCTTGCCAAATGTTGTGTTTTATAAAAAGGTAA  1144
      || |||||||||||| |||||||||| |    || |||||  ||||||||
seq2  ATAAATTATTTTTCA-GTCTTGCCAAGT----TGGTTTAT--AAAGGTAA  1136

seq1  C  1145
      |
seq2  C  1137

seq1: chr6_47094604_47095604
seq2: B6Ng01-142H23.g_70_1088 (reverse)

seq1  CACGT-CCTC-CTCAGGCACTTTCACACACATGGATGT--GGAGTGGAG-  45
      ||||| |||| |||||||| |||||||||||  |||||  | ||||||| 
seq2  CACGTCCCTCTCTCAGGCATTTTCACACACAGTGATGTTGGAAGTGGAGC  50

seq1  CCATGAGCACA-CGCGTAAGCACACAAACAACACAC-ATACAAAGTAAAA  93
      ||||| ||||| ||||| |||||||||||||||||| |||||||||||||
seq2  CCATGGGCACACCGCGT-AGCACACAAACAACACACAATACAAAGTAAAA  99

seq1  ACCTGTGCCTAAGTAC-AGAATTAG-AGGAGAGTGGCTGTCGTGGTGCTT  141
      | |||||||| ||||| |||||||| |||||||| |||||||| ||||||
seq2  A-CTGTGCCT-AGTACAAGAATTAGAAGGAGAGTAGCTGTCGT-GTGCTT  146

seq1  -CCCGTGATACTGACATTGATCTTTGTCGT-ATATTGGGGCAGCTCTC-T  188
       |||||||||||||||||||||||| |||| ||||||||||||||||| |
seq2  CCCCGTGATACTGACATTGATCTTTTTCGTAATATTGGGGCAGCTCTCTT  196

seq1  GAGTGTA-CATGCAAAGATTGCTACTGCCAGGGACTGAAGT-CCCCAGGG  236
      ||||||| |||||||||||||||| |||||||||||||||| ||||||||
seq2  GAGTGTACCATGCAAAGATTGCTATTGCCAGGGACTGAAGTCCCCCAGGG  246

seq1  AAGATCAGACA-CCAGTGGCAGGGATGCTCTGCCTCCTT-CCCTGGAAAA  284
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  AAGATCAGACACCCAGTGGCAGGGATGCTCTGCCTCCTTCCCCTGGAAAA  296

seq1  GATATTAGTGATGGTCAAATGTGGGTGTTGC-AACAGCACTGTTCTGTCC  333
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GATATTAGTGATGGTCAAATGTGGGTGTTGCAAACAGCACTGTTCTGTCC  346

seq1  TTCCTGTCCTAGGC-TGGGGGCTC-AAGTC-TTGGA-CCAGATATATATA  379
      |||||||||||||| ||||||||| ||||| ||||| |||||||||||||
seq2  TTCCTGTCCTAGGCTTGGGGGCTCAAAGTCTTTGGACCCAGATATATATA  396

seq1  TATAGATATATATGGCTTC-TTTCCAAGCCCTCT-CCTCCTGTTGAGTGA  427
      ||||||||||||||||||| |||||||||||||| || ||||||||||||
seq2  TATAGATATATATGGCTTCTTTTCCAAGCCCTCTCCCCCCTGTTGAGTGA  446

seq1  TGGATTCATCTTCCTGCAGTCTTGACTGGCTATTCCCAATATTGTGAGAC  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCATCTTCCTGCAGTCTTGACTGGCTATTCCCAATATTGTGAGAC  496

seq1  TTCAGATAGGTTTCTAGCTCTTCTTAGGGTGAGATGCCTTCAGTCAAAAC  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAGGTTTCTAGCTCTTCTTAGGGTGAGATGCCTTCAGTCAAAAC  546

seq1  CACTTCAAGTCCCTCTCCCTATTTCTATCTCCCCCACTTAAGACCCCACT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAAGTCCCTCTCCCTATTTCTATCTCCCCCACTTAAGACCCCACT  596

seq1  GAAGTGCCTTTCACTGAGTGAGCTACTCACGTGATGAATTTCAGGTAGTC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCCTTTCACTGAGTGAGCTACTCACGTGATGAATTTCAGGTAGTC  646

seq1  CATCCCAGAAAACAGCCCAAGCCTGGGCAGACACACGTGCTCAGTGTGAA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGAAAACAGCCCAAGCCTGGGCAGACACACGTGCTCAGTGTGAA  696

seq1  TCCCAGCCCTCCTTGCTGGACTCTGAGCTGTCCTCAGGCTAAGCACTCTG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCCTCCTTGCTGGACTCTGAGCTGTCCTCAGGCTAAGCACTCTG  746

seq1  CTCTTACTAGGACAGGGATTTACCCTGTGAGGTCACAGAAGCCTCACCTC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTAGGACAGGGATTTACCCTGTGAGGTCACAGAAGCCTCACCTC  796

seq1  ACAGCATTCTGGGAATCACAAAGGGCATCTGGTGCTCAGCCATCTCCCAG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTCTGGGAATCACAAAGGGCATCTGGTGCTCAGCCATCTCCCAG  846

seq1  CTTGGTCCATGCTGTTCTCTACATAACTGTTTCAAGCATCTTTGGAAACA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCATGCTGTTCTCTACATAACTGTTTCAAGCATCTTTGGAAACA  896

seq1  CTTAGCTTTGGGAAAGTAGCTGCAAGTGCTCCTTTTTTTTTTTTTTGAGG  927
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTAGCTTTGGGAAAGTAGCTGCAAGTGCTCC-TTTTTTTTTTTTTGAGG  945

seq1  CAGGCTTTTTCTGTGCAGCCATGGCTGTCCTGGAACTCACTCTGGAGACC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTTTCTGTGCAGCCATGGCTGTCCTGGAACTCACTCTGGAGACC  995

seq1  AGGCTGGCCTTGATCTCAGAATTC  1001
      ||||||||||||||||||||||||
seq2  AGGCTGGCCTTGATCTCAGAATTC  1019