BAC Information

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BAC

Clone NameB6Ng01-142J12
Chromosome6 (Build37)
Map Location 130,979,326 - 131,082,758
singlet/doubletdoublet
Overlap geneEG625648, LOC667830
Upstream geneLOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628
Downstream geneEG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142J12.bB6Ng01-142J12.g
ACCDH940749DH940750
length1,083995
definitionDH940749|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J12, 5' end.DH940750|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,081,670 - 131,082,758)(130,979,326 - 130,980,185)
sequence
gaattctctagagaacaaacatgtatacatataagggagtatatcttcct
tcatcatttacttggaaccagtattgtgatgctgatatagaatcaggaaa
gaggttgtggtaagttggaagaggtacatatgctgctgttatcattttac
cagcaagccccttgccatgcaattcattgacaggagtaatagccacagca
atagataggcacttcacataaacattgccctgagcagggcagtgttggta
cacacttttaatcccatcacttgggaggcagaggcaggtggatttctgag
tttgaggtgagttagcgaggatagcgagggctacacaaagaaaccctgtc
caaaacaaaacaaaacaaatcaaacaaacaaaaaaccacattgccctgaa
ctgaattattttcaacataaatatgaatgactcctccttgtttattacat
tctccaatgacattaacctctgtatcccatcaaacttcttcttctgttag
aggattaaacatgttagaaagttggaaacactattgcaagaggttgaaaa
gacagagatgtagcaatagctgaggctttgctctgctgggaaagtcctgt
tgcaaatctgatgtaagaccccctttcgggaacccctactctagtctcag
gagtgtgagagcaccaaaagaaacacgaggacccaacttgctgtaattac
atgaggacgtttaattatggagctccggaccgacatgcatcccacacagg
agataacggatgccggccacgaggctcgaaagttagggggttttatgggg
tgaggggcttaggggtgtggaattcagcatagcaacacactattggctta
ttcaaacattaacagaaaaattatatgtatgtgcagggtgtcagagttct
gtgagttgttgactcagtttagaaagccctgttgtgtcttcacatttctc
tttatctttaaatgtaaagctgtaccagaatgtttaactacgaggcatac
ccaggttgtttttctctatcctcagcccaggtagctctaagctcacaaaa
caacagcatttctgagtaccttatatgacttac
gaattcattcctatatttctaagtagcaaatagtgcccagagtcgtgcct
cagtgctgggggtgactagagtgcagccagcattaagctcagtgaaggca
gaatgaagtctttaaagtagtgtacagtctgtcttccgtttaccaaacca
gaaagggttacagagaagtatgtggcaaatgttatgtttcttggtcctca
cttatctttaggtcatccacataccaggaagaagggagaaggcagagcct
gagaggggcagaactggtctgattctaagtgaacaccaacagtaaggaat
gagtgaataactccttttattcaggagatttcggctctgatcatttaaat
gaaggctgtactggggggtttcctttttgaagagttgaaccttgtttgtt
caaagtgatttatttgatgatgtatgtgaatgcatatactttatttgtgg
ttaaccagaattatataacttttgtgcaaaagaatacccaggaaggaagt
caactggctgaatgataggttgtctccatactgcataagcatgacgaact
aaaaccatctggccttggaatttattgtttgggaggtctttagtgactgc
ttttatttcttgtttattttattatatttatatatttttttacactctat
attccattccctaacccctcatccaccctccatctgctccacatccaaat
cctcctccataccacaccccatctccatgaagatgccccaacctcacctg
acctctaaactccctggggactccagtctcatgagggttaggtgcatctt
ctctgaaagaacacagacccagaagtcccctactgtatgtgtgttggggg
ccttatatcagtgatgtatgctgtctgtttggtggtccagtgtttgagag
atctcagtggtctcgattatttgacctgctgttctcctacaggatagcgc
ttctctcagcttcttcacttccctaattcagaacagctgcttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_131081670_131082758
seq2: B6Ng01-142J12.b_48_1130 (reverse)

seq1  GTAAGTCATATAAAGTACTCAGAAATTGCTGGTTGTTTGTGAGCCTAGAG  50
      ||||||||||||| ||||||||||| ||||| |  ||||||||| |||| 
seq2  GTAAGTCATATAAGGTACTCAGAAA-TGCTGTTGTTTTGTGAGCTTAGA-  48

seq1  GCTACCTGGGGCTGAGAAAAGAGAAAAACAAACCTGGGTATGCCTCGTAG  100
      ||||||| |||||||| | |||||||||| ||||||||||||||||||||
seq2  GCTACCT-GGGCTGAGGATAGAGAAAAAC-AACCTGGGTATGCCTCGTAG  96

seq1  TTAAAACATTCCTGGGTACAGCTTAACA-TTAAAGATAAAGAGGAATGTG  149
      || ||||||||   |||||||||| ||| |||||||||||||| ||||||
seq2  TT-AAACATTC--TGGTACAGCTTTACATTTAAAGATAAAGAGAAATGTG  143

seq1  AAGACACAACAGGGCTATCTAAACTGAGTCAACAACTCACAGAACTCTGA  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGACACAACAGGGCTTTCTAAACTGAGTCAACAACTCACAGAACTCTGA  193

seq1  CACCCTGCACATACATATAATTTTTCTGTTAATGTTTGAATAAGCCAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCACATACATATAATTTTTCTGTTAATGTTTGAATAAGCCAATA  243

seq1  GTGTGTTGCTATGCTGAATTCCACACCCCTAAGCCCCTCACCCCATAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGCTATGCTGAATTCCACACCCCTAAGCCCCTCACCCCATAAAA  293

seq1  CCCCCTAACTTTCGAGCCTCGTGGCCGGCATCCGTTATCTCCTGTGTGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAACTTTCGAGCCTCGTGGCCGGCATCCGTTATCTCCTGTGTGGG  343

seq1  ATGCATGTCGGTCCGGAGCTCCATAATTAAACGTCCTCATGTAATTACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTCGGTCCGGAGCTCCATAATTAAACGTCCTCATGTAATTACAG  393

seq1  CAAGTTGGGTCCTCGTGTTTCTTTTGGTGCTCTCACACTCCTGAGACTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGGTCCTCGTGTTTCTTTTGGTGCTCTCACACTCCTGAGACTAG  443

seq1  AGTAGGGGTTCCCGAAAGGGGGTCTTACATCAGATTTGCAACAGGACTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGGTTCCCGAAAGGGGGTCTTACATCAGATTTGCAACAGGACTTT  493

seq1  CCCAGCAGAGCAAAGCCTCAGCTATTGCTACATCTCTGTCTTTTCAACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGAGCAAAGCCTCAGCTATTGCTACATCTCTGTCTTTTCAACCT  543

seq1  CTTGCAATAGTGTTTCCAACTTTCTAACATGTTTAATCCTCTAACAGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAATAGTGTTTCCAACTTTCTAACATGTTTAATCCTCTAACAGAAG  593

seq1  AAGAAGTTTGATGGGATACAGAGGTTAATGTCATTGGAGAATGTAATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTTGATGGGATACAGAGGTTAATGTCATTGGAGAATGTAATAAA  643

seq1  CAAGGAGGAGTCATTCATATTTATGTTGAAAATAATTCAGTTCAGGGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGAGTCATTCATATTTATGTTGAAAATAATTCAGTTCAGGGCAA  693

seq1  TGTGGTTTTTTGTTTGTTTGATTTGTTTTGTTTTGTTTTGGACAGGGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTTTTGTTTGTTTGATTTGTTTTGTTTTGTTTTGGACAGGGTTT  743

seq1  CTTTGTGTAGCCCTCGCTATCCTCGCTAACTCACCTCAAACTCAGAAATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTAGCCCTCGCTATCCTCGCTAACTCACCTCAAACTCAGAAATC  793

seq1  CACCTGCCTCTGCCTCCCAAGTGATGGGATTAAAAGTGTGTACCAACACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTGCCTCCCAAGTGATGGGATTAAAAGTGTGTACCAACACT  843

seq1  GCCCTGCTCAGGGCAATGTTTATGTGAAGTGCCTATCTATTGCTGTGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTCAGGGCAATGTTTATGTGAAGTGCCTATCTATTGCTGTGGCT  893

seq1  ATTACTCCTGTCAATGAATTGCATGGCAAGGGGCTTGCTGGTAAAATGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCCTGTCAATGAATTGCATGGCAAGGGGCTTGCTGGTAAAATGAT  943

seq1  AACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTCTTTCCTGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTCTTTCCTGATT  993

seq1  CTATATCAGCATCACAATACTGGTTCCAAGTAAATGATGAAGGAAGATAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAGCATCACAATACTGGTTCCAAGTAAATGATGAAGGAAGATAT  1043

seq1  ACTCCCTTATATGTATACATGTTTGTTCTCTAGAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTTATATGTATACATGTTTGTTCTCTAGAGAATTC  1083

seq1: chr6_130979326_130980185
seq2: B6Ng01-142J12.g_67_926

seq1  GAATTCATTCCTATATTTCTAAGTAGCAAATAGTGCCCAGAGTCGTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTATATTTCTAAGTAGCAAATAGTGCCCAGAGTCGTGCCT  50

seq1  CAGTGCTGGGGGTGACTAGAGTGCAGCCAGCATTAAGCTCAGTGAAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGGGGGTGACTAGAGTGCAGCCAGCATTAAGCTCAGTGAAGGCA  100

seq1  GAATGAAGTCTTTAAAGTAGTGTACAGTCTGTCTTCCGTTTACCAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGTCTTTAAAGTAGTGTACAGTCTGTCTTCCGTTTACCAAACCA  150

seq1  GAAAGGGTTACAGAGAAGTATGTGGCAAATGTTATGTTTCTTGGTCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTTACAGAGAAGTATGTGGCAAATGTTATGTTTCTTGGTCCTCA  200

seq1  CTTATCTTTAGGTCATCCACATACCAGGAAGAAGGGAGAAGGCAGAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTTAGGTCATCCACATACCAGGAAGAAGGGAGAAGGCAGAGCCT  250

seq1  GAGAGGGGCAGAACTGGTCTGATTCTAAGTGAACACCAACAGTAAGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGCAGAACTGGTCTGATTCTAAGTGAACACCAACAGTAAGGAAT  300

seq1  GAGTGAATAACTCCTTTTATTCAGGAGATTTCGGCTCTGATCATTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAATAACTCCTTTTATTCAGGAGATTTCGGCTCTGATCATTTAAAT  350

seq1  GAAGGCTGTACTGGGGGGTTTCCTTTTTGAAGAGTTGAACCTTGTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGTACTGGGGGGTTTCCTTTTTGAAGAGTTGAACCTTGTTTGTT  400

seq1  CAAAGTGATTTATTTGATGATGTATGTGAATGCATATACTTTATTTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGATTTATTTGATGATGTATGTGAATGCATATACTTTATTTGTGG  450

seq1  TTAACCAGAATTATATAACTTTTGTGCAAAAGAATACCCAGGAAGGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAGAATTATATAACTTTTGTGCAAAAGAATACCCAGGAAGGAAGT  500

seq1  CAACTGGCTGAATGATAGGTTGTCTCCATACTGCATAAGCATGACGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCTGAATGATAGGTTGTCTCCATACTGCATAAGCATGACGAACT  550

seq1  AAAACCATCTGGCCTTGGAATTTATTGTTTGGGAGGTCTTTAGTGACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATCTGGCCTTGGAATTTATTGTTTGGGAGGTCTTTAGTGACTGC  600

seq1  TTTTATTTCTTGTTTATTTTATTATATTTATATATTTTTTTACACTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTTGTTTATTTTATTATATTTATATATTTTTTTACACTCTAT  650

seq1  ATTCCATTCCCTAACCCCTCATCCACCCTCCATCTGCTCCACATCCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTCCCTAACCCCTCATCCACCCTCCATCTGCTCCACATCCAAAT  700

seq1  CCTCCTCCATACCACACCCCATCTCCATGAAGATGCCCCAACCTCACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCATACCACACCCCATCTCCATGAAGATGCCCCAACCTCACCTG  750

seq1  ACCTCTAAACTCCCTGGGGACTCCAGTCTCATGAGGGTTAGGTGCATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAAACTCCCTGGGGACTCCAGTCTCATGAGGGTTAGGTGCATCTT  800

seq1  CTCTGAAAGAACACAGACCCAGAAGTCCCCTACTGTATGTGTGTTGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGAACACAGACCCAGAAGTCCCCTACTGTATGTGTGTTGGGGG  850

seq1  CCTTATATCA  860
      ||||||||||
seq2  CCTTATATCA  860