BAC Information

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BAC

Clone NameB6Ng01-142K15
Chromosome6 (Build37)
Map Location 118,992,100 - 119,156,476
singlet/doubletdoublet
Overlap geneCacna1c, Dcp1b
Upstream geneRasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneCacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142K15.bB6Ng01-142K15.g
ACCDH940801DH940802
length1,1231,069
definitionDH940801|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K15, 5' end.DH940802|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,992,100 - 118,993,247)(119,155,411 - 119,156,476)
sequence
gaattctcatgccaggaggtcaccgccgtgtccctctccattggggcacg
ttttctaagactatcttcccttcttgtgcctcccagggtgttccctcagt
gagatcttctcgggtccactggaagccacagaagcaatcttttagaaagc
aaagggtcctgcagtcactcagttattggagcttcttctagccccacagg
gacacctgctcctttggaggctggtagcagctaactaaccatcccttgga
acaaactccagtgcctcatcagggccaaggtacctctgccccagctcaag
tcatctagctgactctcagtgtgagaactactctgagttcctctcaccat
ggagtccttgccctgctctgctctgcaccaggattctccacaggttgctg
cccacttgggtcctcactcctatctctctgccctggttcctgtgacacct
ccacagggagccctgccatgcttaccccctgccaactcttaacacaactc
tcccttcgcctctttcgcgctgtctatgatgttctgcgcttattttattt
acaactctgcctactgggtttctggcaacatcaccaaacagggctccaga
aggatcttgtgttaggcaggaggttagctctggggacgatccaacgtcct
cccaagaaaagactacaggatgacaggtgctcctactcaggaccctaaaa
cagaatataaacataatggtggtgcctgaatggcggtcaaggtgtgaaga
tagtcacgacaatccattctagatgggccagctcagggtctcaaaaacag
gatgcaaggggcaatgagtgatcctggtccataagagctaggtcaaattc
gagtgacttcaagacttcctagcagaggagtgtgcacagagtgccctgcc
ctttcccagtagatacttcactttagagtgctaagctctatgcatactct
tggcatctttaataatttactaagatctgtatagaatggcttcccagaaa
aacagtctttccctagaagtgctctgcttgaaagagccagggaaaggtat
agagaaggaataagcatccttcagatagctgctcagtcagccactggctt
acacgtgcatcctgctagctcga
gaattcaaatacttcattttggatgttagtaagagaagcaacggcatttt
tacccctgctcttgcttatctaattggtaaatggctactttaaaatacag
ttctgatgggaactatatttgagtagaaaccaagtacaaatttgcctttg
tgtgtaattcggtgccctgaaataccaccactcacatcaggcacccagga
cccacatgctattggggagctgggaggccatgtgcttacttaagaagatg
taagttcagccgggcgtggtgctgcactcgggaggcagaggcagaggcag
gcggatttctgagttcgaggccagcctggtctacaaagtgagttccagga
cagccaggactatacagagaaaccttgtcttgaaaagactaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaggaagacgtaagttaaaaacaacc
aggctaatgagtttcaattgtaagcaatcacagatataacctaactagag
tagagtatggagaactgccaaaagtatttaacccaagatcctaaaccttt
ttggtctacaaactaaaatgtacagctgtctcaaaccaccgatttaaaaa
ctgctaacaccatctttatttaatagatgactttcttgcataaaacagga
ataatttaaatgaagtgttctgtgccatttcactacaaattagaatttca
taacagatgaagacaagcctcatcatttcaaatatggactcatactcacc
tgttaatctaaccaaccatgcaactgctaacagtaagattcataaacaaa
aagccaccctaacaataaatgcccggggcttatttttgttaaaacatagg
aaaacaacagggccacgcacactgccgactctgttagcatttgcttcagc
tgccagacaaggcctcacttcttgaagcattgtgaccacacgacaaagca
tgaagagagaggcatgtctcacacctcggagcccacagttcaagggcaca
tcctctcacaagaaaacagctggggctgccgttcctgtgtcattgatatc
atctataacaaaactctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_118992100_118993247
seq2: B6Ng01-142K15.b_44_1166

seq1  GAATTCTCATGCCAGGAGGTCACCGCCGTGTCCCTCTCCATTGGGGCACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGCCAGGAGGTCACCGCCGTGTCCCTCTCCATTGGGGCACG  50

seq1  TTTTCTAAGACTATCTTCCCTTCTTGTGCCTCCCAGGGTGTTCCCTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGACTATCTTCCCTTCTTGTGCCTCCCAGGGTGTTCCCTCAGT  100

seq1  GAGATCTTCTCGGGTCCACTGGAAGCCACAGAAGCAATCTTTTAGAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTCTCGGGTCCACTGGAAGCCACAGAAGCAATCTTTTAGAAAGC  150

seq1  AAAGGGTCCTGCAGTCACTCAGTTATTGGAGCTTCTTCTAGCCCCACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTCCTGCAGTCACTCAGTTATTGGAGCTTCTTCTAGCCCCACAGG  200

seq1  GACACCTGCTCCTTTGGAGGCTGGTAGCAGCTAACTAACCATCCCTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTGCTCCTTTGGAGGCTGGTAGCAGCTAACTAACCATCCCTTGGA  250

seq1  ACAAACTCCAGTGCCTCATCAGGGCCAAGGTACCTCTGCCCCAGCTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCCAGTGCCTCATCAGGGCCAAGGTACCTCTGCCCCAGCTCAAG  300

seq1  TCATCTAGCTGACTCTCAGTGTGAGAACTACTCTGAGTTCCTCTCACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAGCTGACTCTCAGTGTGAGAACTACTCTGAGTTCCTCTCACCAT  350

seq1  GGAGTCCTTGCCCTGCTCTGCTCTGCACCAGGATTCTCCACAGGTTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCTTGCCCTGCTCTGCTCTGCACCAGGATTCTCCACAGGTTGCTG  400

seq1  CCCACTTGGGTCCTCACTCCTATCTCTCTGCCCTGGTTCCTGTGACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGGGTCCTCACTCCTATCTCTCTGCCCTGGTTCCTGTGACACCT  450

seq1  CCACAGGGAGCCCTGCCATGCTTACCCCCTGCCAACTCTTAACACAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGAGCCCTGCCATGCTTACCCCCTGCCAACTCTTAACACAACTC  500

seq1  TCCCTTCGCCTCTTTCGCGCTGTCTATGATGTTCTGCGCTTATTTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCGCCTCTTTCGCGCTGTCTATGATGTTCTGCGCTTATTTTATTT  550

seq1  ACAACTCTGCCTACTGGGTTTCTGGCAACATCACCAAACAGGGCTCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTGCCTACTGGGTTTCTGGCAACATCACCAAACAGGGCTCCAGA  600

seq1  AGGATCTTGTGTTAGGCAGGAGGTTAGCTCTGGGGACGATCCAACGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTGTGTTAGGCAGGAGGTTAGCTCTGGGGACGATCCAACGTCCT  650

seq1  CCCAAGAAAAGACTACAGGATGACAGGTGCTCCTACTCAGGACCCTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAAAGACTACAGGATGACAGGTGCTCCTACTCAGGACCCTAAAA  700

seq1  CAGAATATAAACATAATGGTGGTGCCTGAATGGCGGTCAAGGTGTGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATAAACATAATGGTGGTGCCTGAATGGCGGTCAAGGTGTGAAGA  750

seq1  TAGTCACGACAATCCATTCTAGATGGGCCAGCTCAGGGTCTCAAAAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACGACAATCCATTCTAGATGGGCCAGCTCAGGGTCTCAAAAACAG  800

seq1  GATGCAAGGGGCAATGAGTGATCCTGGTCCATAAGAGCTAGGTCAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAGGGGCAATGAGTGATCCTGGTCCATAAGAGCTAGGTCAAATTC  850

seq1  GAGTGACTTCAAGACTTCCTAGCCAGAGGAGTGTGCACAGAGTGCCCCTG  900
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GAGTGACTTCAAGACTTCCTAG-CAGAGGAGTGTGCACAGAGTG-CCCTG  898

seq1  CCCTTTCCCAAGTAGATACTTCAACTTTAAGAGTGCTTAAGCCTCTATGC  950
      ||||||||| |||||||||||| ||||| ||||||| |||| ||||||||
seq2  CCCTTTCCC-AGTAGATACTTC-ACTTT-AGAGTGC-TAAG-CTCTATGC  943

seq1  ATACTCTTGGCATCTTTATATATTTACTAAGAATCTGTATAGAATGGGCT  1000
      ||||||||||||||||||   |||||||||| ||||||||||||| ||||
seq2  ATACTCTTGGCATCTTTAATAATTTACTAAG-ATCTGTATAGAAT-GGCT  991

seq1  TCCCAGAAAAACAGTTCTTTCCCTAGAAGTGCCTCTGC-TGAGAGAGGCA  1049
      |||||||||||||| |||||||||||||||| |||||| ||| |||| ||
seq2  TCCCAGAAAAACAG-TCTTTCCCTAGAAGTG-CTCTGCTTGAAAGAGCCA  1039

seq1  CAGGGGAGAGGGTAATAGGAAGAGGGATAAAAGCATCCTTCTAGGATAGC  1099
         |||| |||   ||||  ||| ||| | |||||||||||   ||||||
seq2  ---GGGAAAGG--TATAG--AGAAGGA-ATAAGCATCCTTC--AGATAGC  1079

seq1  TGCTCAGTTCAGCCCACTCTGCCTACAGCGTGCATCCTTGCTAGCTCGA  1148
      ||||||| |||| |||||  || |||| ||||||||| |||||||||||
seq2  TGCTCAG-TCAG-CCACT-GGCTTACA-CGTGCATCC-TGCTAGCTCGA  1123

seq1: chr6_119155411_119156476
seq2: B6Ng01-142K15.g_69_1137 (reverse)

seq1  TTAGAGTTTTG-TATAGATGATTAAACAGATGCACACAGGGACAGCCAGC  49
      ||||||||||| ||||||||||  | || ||| ||||||| || | ||||
seq2  TTAGAGTTTTGTTATAGATGAT--ATCA-ATG-ACACAGGAAC-GGCAGC  45

seq1  CCCAGGCCTGTTTCCTAGTGAGAGGATGTGCCCCTTGGGAACTGTGGGCT  99
      |||||  |||||| || |||||||||||||||| |   ||||||||||||
seq2  CCCAG--CTGTTTTCTTGTGAGAGGATGTGCCCTT---GAACTGTGGGCT  90

seq1  CCCGAGGTGTGAGACAATGCCTCTCTC-TCATGCTTTGTCGTGTGGTCAC  148
       |||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  -CCGAGGTGTGAGAC-ATGCCTCTCTCTTCATGCTTTGTCGTGTGGTCAC  138

seq1  AATGCTTTCAGGAGTGAGGCCTTGCCTGGGCAGCTGAAGCAAATGCTAAC  198
      |||||||  || |||||||||||| || ||||||||||||||||||||||
seq2  AATGCTTCAAGAAGTGAGGCCTTGTCT-GGCAGCTGAAGCAAATGCTAAC  187

seq1  AGAGTCCGCAGTGTGCGTGGCCCTGTTG-TGTCCTATGTTTTAAC-AAAA  246
      |||||| ||||||||||||||||||||| | |||||||||||||| ||||
seq2  AGAGTCGGCAGTGTGCGTGGCCCTGTTGTTTTCCTATGTTTTAACAAAAA  237

seq1  TAAGCCCC-GGCA-TTATTGTTAGG--TGCTTTT--GTTATGAATCTTAC  290
      |||||||| |||| |||||||||||   ||||||   |||||||||||||
seq2  TAAGCCCCGGGCATTTATTGTTAGGGTGGCTTTTTGTTTATGAATCTTAC  287

seq1  TGTTAGCAGTTGCATGGTTGGTTAGATTAACAGGTGAGTATGAGTCCATA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCAGTTGCATGGTTGGTTAGATTAACAGGTGAGTATGAGTCCATA  337

seq1  TTTGAAATGATGAGGCTTGTC-TCATCTGTTTATGAAATTCTAATTTGTA  389
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  TTTGAAATGATGAGGCTTGTCTTCATCTG-TTATGAAATTCTAATTTGTA  386

seq1  GTG-AATGGCACAGAACACTTCATTTAAATTA-TCCTG-TTTATGCAAG-  435
      ||| |||||||||||||||||||||||||||| ||||| |||||||||| 
seq2  GTGAAATGGCACAGAACACTTCATTTAAATTATTCCTGTTTTATGCAAGA  436

seq1  AAGTCATCTATTAAATAAAGATGGTGTTAGCAGTTTTTAAATCGGTGGTT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCTATTAAATAAAGATGGTGTTAGCAGTTTTTAAATCGGTGGTT  486

seq1  TGAGACAGCTGTACATTTTAGTTTGTAGACCAAAAAGGTTTAGGATCTTG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGCTGTACATTTTAGTTTGTAGACCAAAAAGGTTTAGGATCTTG  536

seq1  GGTTAAATACTTTTGGCAGTTCTCCATACTCTACTCTAGTTAGGTTATAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATACTTTTGGCAGTTCTCCATACTCTACTCTAGTTAGGTTATAT  586

seq1  CTGTGATTGCTTACAATTGAAACTCATTAGCCTGGTTGTTTTTAACTTAC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTGCTTACAATTGAAACTCATTAGCCTGGTTGTTTTTAACTTAC  636

seq1  GTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTT  685
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTCTTT  686

seq1  TCAAGACAAGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACAAGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTG  736

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCTGCC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCTGCC  786

seq1  TCCCGAGTGCAGCACCACGCCCGGCTGAACTTACATCTTCTTAAGTAAGC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTGCAGCACCACGCCCGGCTGAACTTACATCTTCTTAAGTAAGC  836

seq1  ACATGGCCTCCCAGCTCCCCAATAGCATGTGGGTCCTGGGTGCCTGATGT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCCTCCCAGCTCCCCAATAGCATGTGGGTCCTGGGTGCCTGATGT  886

seq1  GAGTGGTGGTATTTCAGGGCACCGAATTACACACAAAGGCAAATTTGTAC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTGGTATTTCAGGGCACCGAATTACACACAAAGGCAAATTTGTAC  936

seq1  TTGGTTTCTACTCAAATATAGTTCCCATCAGAACTGTATTTTAAAGTAGC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTACTCAAATATAGTTCCCATCAGAACTGTATTTTAAAGTAGC  986

seq1  CATTTACCAATTAGATAAGCAAGAGCAGGGGTAAAAATGCCG-TGC-TCT  1033
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  CATTTACCAATTAGATAAGCAAGAGCAGGGGTAAAAATGCCGTTGCTTCT  1036

seq1  CTTACTAACATCCAAAATGAAGTATTTGAATTC  1066
      |||||||||||||||||||||||||||||||||
seq2  CTTACTAACATCCAAAATGAAGTATTTGAATTC  1069