BAC Information

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BAC

Clone NameB6Ng01-142N05
Chromosome6 (Build37)
Map Location 18,835,448 - 18,835,968
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142N05.bB6Ng01-142N05.g
ACCDH940924DH940925
length960896
definitionDH940924|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N05, 5' end.DH940925|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccactagtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgcttcttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagttttatcatac
agatctttacttccttcgttagagtcacgccgagatattttatattattt
gtggctattg

gaattccagtttttatgcttctacagaaagtgttcctacctactgatccg
tgatttcatctctgctgtttaaaatccaaatagccctagttgagaaatga
gtagatagtgattagaacaccccatcactaaattaacaggtatctatttt
tcttcccaaggagggtgaaacagcttcaaacatgtgatttctagtttagt
caactaaaggaacagctacagtgaaatgtggcagtaaatgaaacatcagt
tgcttgtcaaccttttgttttaacagttttagttttttggggagatgctt
atacttgtgccaggcttgagtgtggaggtcaaaggacaacttctcatagt
cactcttaccatgtgactcaggtcttccaactcaggtcttcaggcttggt
ggtaagctccttaaccctctagccatcctgtaggcttagctgtcactatt
tgaaacatgtttactcttcagccaccaatagcaattatggtgaaaaattc
cattaggaaaagtatcagcctgggaccccaaagaccaagttctcatcaaa
aaaaggtgatttatttggcacagagggtctgaggacagggaataagagac
aaagacaggaaatagaggacaagggagaagggaaagggaacaaagggaag
gggttaggggtatttgtcccagagatacaacattttgcctctggatagag
aggaagacagacatagcacatagaaaaatggtgttctataagggatgtat
ggatgtgtataaggatgagttgtttaattttagttagcatgttaattagg
taaccaaaaagggattattggattggtggcttcaatattttgataactgg
actttggtagttaccttggataggagtggcatattatggccttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835448_18835968
seq2: B6Ng01-142N05.b_49_570 (reverse)

seq1  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCCAAAAC  50

seq1  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100

seq1  GGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGT  150
      |||||||||| |||||||||||| |||||||||||||||||||||| |||
seq2  GGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGT  150

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250

seq1  GAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAG  299
       ||||||||| ||||||||||||||||||||||| |||||||| || | |
seq2  CAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCG  300

seq1  AGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  350

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  399
      |||||| ||| ||||||||||||||||||||||||| |||||||||||||
seq2  AGACACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCT  400

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  450

seq1  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGG  499
      ||||||||||||||| |||||||||||||||||||| |||| ||||||||
seq2  CTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCCCTTAAAAAATGGGG  500

seq1  CTCAGAACTGAACAAAGAATTC  521
      ||||||||||||||||||||||
seq2  CTCAGAACTGAACAAAGAATTC  522


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