BAC Information

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BAC

Clone NameB6Ng01-142P17
Chromosome6 (Build37)
Map Location 100,861,776 - 101,015,338
singlet/doubletdoublet
Overlap geneEG545870
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2
Downstream geneLOC100043321, Pdzrn3, EG666084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142P17.bB6Ng01-142P17.g
ACCDH941041DH941042
length7241,035
definitionDH941041|Mus musculus domesticus DNA, BAC clone: B6Ng01-142P17, 5' end.DH941042|Mus musculus domesticus DNA, BAC clone: B6Ng01-142P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,861,776 - 100,862,499)(101,014,285 - 101,015,338)
sequence
gaattcttggggagaaaaccctgtatgtcaggtgaggaggttttcaaccg
agagacccttgcaggctgtagaaatggtgtgaatggaccaggggcccagc
ttctggcctgtctagtactgtgtcgggctgcccatttgtcacattaggtt
cctgacactaatcaatcacattttgagaatgcagactgttgaatttggta
attaagtggatgatcgataaacaaatctgacttcctttcaattcttaaat
acaagtcaggcgtgagctcttgaagaaagcttgcagagctgacatttgtc
tcctctgcatacggcatttaaaaagcagagggtgctgcgttaaaaagtag
agggtgctgcgttagttgctttttttgttgctgtgatgaaacaccacagc
aagacagtttataaaaggaagggtttaacttggggtttcgcttcaaaggg
taagagttcataatagcgaggaagactggcagccagcggcaggcgtggcg
tcgggagcaggaagctgagcgctcacgttttcaactgtaagcgggaagca
gactgggaaactggaaatggctcttgtctttaaactgggtaccaagcatc
catccgaatgcatgagccactgagggaagagttattgtcatgcggactac
cacaggtgactggctgggaagaggaaggggccagcaggagtgggaggggg
acaagagagggtgggaggggtgaa
gaattcttgctttcattgaaggaagagagtcatggacccatggggatgag
atttgaagtctccctgattctagcaaaagagaaaaccagactctatcacg
ctcacaggtcacctgcatctcatgatattcgggggccaatgagatgcctc
tgcatgtaaatgagcctacagtctgagcactcactccagggtgcccccca
gaacccacctgataggaggaggaaaaacacaactcccacaagctgtccct
aacctccacacatgcacatgcacatacacactcaaacaagatggaataga
aaagtgatacaaaattatgcaaagtaaacaaaatgatgctcagactaacc
caccgtagaactctccgggcttatcaaactctgtcttccaggtctcaata
gggtaggctgcccaaatttagagcttgtgtgtaaaacatgtatttgaaaa
gttaaaggacacacagtgtaataagaacccattctccttatacacacatg
taaacacacaaatacacacacacacacacacacacacacacttccttaca
atctgaacgggtttatgctagatctaaacccttgtggttcagtgatctta
cagaaatgaagatatcaaacatgcttttcatagggacagagagggggcag
ggaaacagacaaacaaggagatcacaagttattacaggacttcaagacct
gtgattaagtctttaatgagatttggcttccatttcaagtccatctctgg
gtttcataattaaggtgtgagaagtctgataaaacaagcttcgagtcaga
cgtaaacagaaatcgggaactttagaccatacctctactccacagttaat
aaacctagcaggaacaaagcagaggctctgagtagcagagccaagataga
gagagtaaggctgagttgacctatgaaagacagcttctgctggaaaacct
ttggagactcagtttagcagaagtacattaaacgatatgacctgagttgt
gtcagtatcccagaatctggattttctgtctttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_100861776_100862499
seq2: B6Ng01-142P17.b_50_773

seq1  GAATTCTTGGGGAGAAAACCCTGTATGTCAGGTGAGGAGGTTTTCAACCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGGAGAAAACCCTGTATGTCAGGTGAGGAGGTTTTCAACCG  50

seq1  AGAGACCCTTGCAGGCTGTAGAAATGGTGTGAATGGACCAGGGGCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCTTGCAGGCTGTAGAAATGGTGTGAATGGACCAGGGGCCCAGC  100

seq1  TTCTGGCCTGTCTAGTACTGTGTCGGGCTGCCCATTTGTCACATTAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCTGTCTAGTACTGTGTCGGGCTGCCCATTTGTCACATTAGGTT  150

seq1  CCTGACACTAATCAATCACATTTTGAGAATGCAGACTGTTGAATTTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACTAATCAATCACATTTTGAGAATGCAGACTGTTGAATTTGGTA  200

seq1  ATTAAGTGGATGATCGATAAACAAATCTGACTTCCTTTCAATTCTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGGATGATCGATAAACAAATCTGACTTCCTTTCAATTCTTAAAT  250

seq1  ACAAGTCAGGCGTGAGCTCTTGAAGAAAGCTTGCAGAGCTGACATTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCAGGCGTGAGCTCTTGAAGAAAGCTTGCAGAGCTGACATTTGTC  300

seq1  TCCTCTGCATACGGCATTTAAAAAGCAGAGGGTGCTGCGTTAAAAAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCATACGGCATTTAAAAAGCAGAGGGTGCTGCGTTAAAAAGTAG  350

seq1  AGGGTGCTGCGTTAGTTGCTTTTTTTGTTGCTGTGATGAAACACCACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTGCGTTAGTTGCTTTTTTTGTTGCTGTGATGAAACACCACAGC  400

seq1  AAGACAGTTTATAAAAGGAAGGGTTTAACTTGGGGTTTCGCTTCAAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTTTATAAAAGGAAGGGTTTAACTTGGGGTTTCGCTTCAAAGGG  450

seq1  TAAGAGTTCATAATAGCGAGGAAGACTGGCAGCCAGCGGCAGGCGTGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTCATAATAGCGAGGAAGACTGGCAGCCAGCGGCAGGCGTGGCG  500

seq1  TCGGGAGCAGGAAGCTGAGCGCTCACGTTTTCAACTGTAAGCGGGAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAGCAGGAAGCTGAGCGCTCACGTTTTCAACTGTAAGCGGGAAGCA  550

seq1  GACTGGGAAACTGGAAATGGCTCTTGTCTTTAAACTGGGTACCAAGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGAAACTGGAAATGGCTCTTGTCTTTAAACTGGGTACCAAGCATC  600

seq1  CATCCGAATGCATGAGCCACTGAGGGAAGAGTTATTGTCATGCGGACTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGAATGCATGAGCCACTGAGGGAAGAGTTATTGTCATGCGGACTAC  650

seq1  CACAGGTGACTGGCTGGGAAGAGGAAGGGGCCAGCAGGAGTGGGAGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGACTGGCTGGGAAGAGGAAGGGGCCAGCAGGAGTGGGAGGGGG  700

seq1  ACAAGAGAGGGTGGGAGGGGTGAA  724
      ||||||||||||||||||||||||
seq2  ACAAGAGAGGGTGGGAGGGGTGAA  724

seq1: chr6_101014285_101015338
seq2: B6Ng01-142P17.g_69_1103 (reverse)

seq1  ACAAAGACAGAAAATCCCAGGATTCTGGGAATACTGACACCACCTCCAGG  50
      |||||||||||||||||   ||||||||| |||||||||| ||   ||||
seq2  ACAAAGACAGAAAATCC--AGATTCTGGG-ATACTGACACAAC--TCAGG  45

seq1  TCATATCGTTTTAATGTTACTTCCTTGCTAAACTGGAGTCTCCAAAGGTT  100
      |||||||| ||||||| ||||||  ||||||||| ||||||||||||| |
seq2  TCATATCG-TTTAATG-TACTTC--TGCTAAACT-GAGTCTCCAAAGG-T  89

seq1  TTTCCAGCCAGAAGCCTGTCTTTTCATAGGTCAACTCAGCCTTACTCCTT  150
      ||||||| |||||| ||||| ||||||||||||||||||||||||||  |
seq2  TTTCCAG-CAGAAG-CTGTC-TTTCATAGGTCAACTCAGCCTTACTC--T  134

seq1  CTCTATCTTGGCTCTGCTACTCAGGGCCTCCTGCTTTGTTCCCTGCTAGG  200
      |||||||||||||||||||||||| |||| |||||||||| ||||||| |
seq2  CTCTATCTTGGCTCTGCTACTCAGAGCCT-CTGCTTTGTT-CCTGCTA-G  181

seq1  GTTTATTAACTGTGGAGTAGAGGTATGGTCTAAAGTTCCCGATTTCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTAACTGTGGAGTAGAGGTATGGTCTAAAGTTCCCGATTTCTGTT  231

seq1  TACGTCTGACTCGAAGCTTG-TTTATCAGACTTCTCACACCTTAATTATG  299
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TACGTCTGACTCGAAGCTTGTTTTATCAGACTTCTCACACCTTAATTATG  281

seq1  AAACCCAGAGATGGACTTTGAAATGGAAGCCAAATCTCATTAAAGACTTA  349
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAACCCAGAGATGGAC-TTGAAATGGAAGCCAAATCTCATTAAAGACTTA  330

seq1  ATCACAGGTCTTGAAGTCCTGTAATAACTTGTGATCTCCTTGTTTGTCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGTCTTGAAGTCCTGTAATAACTTGTGATCTCCTTGTTTGTCTG  380

seq1  TTTCCCTGCCCCCTCTCTGTCCCTATGAAAAGCATGTTTGATATCTTCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGCCCCCTCTCTGTCCCTATGAAAAGCATGTTTGATATCTTCAT  430

seq1  TTCTGTAAGATCACTGAACCACAAGGGTTTAGATCTAGCATAAACCCGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAGATCACTGAACCACAAGGGTTTAGATCTAGCATAAACCCGTT  480

seq1  CAGATTGTAAGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGTAAGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGT  530

seq1  GTTTACATGTGTGTATAAGGAGAATGGGTTCTTATTACACTGTGTGTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATGTGTGTATAAGGAGAATGGGTTCTTATTACACTGTGTGTCCT  580

seq1  TTAACTTTTCAAATACATGTTTTACACACAAGCTCTAAATTTGGGCAGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTTCAAATACATGTTTTACACACAAGCTCTAAATTTGGGCAGCC  630

seq1  TACCCTATTGAGACCTGGAAGACAGAGTTTGATAAGCCCGGAGAGTTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTATTGAGACCTGGAAGACAGAGTTTGATAAGCCCGGAGAGTTCTA  680

seq1  CGGTGGGTTAGTCTGAGCATCATTTTGTTTACTTTGCATAATTTTGTATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGGTTAGTCTGAGCATCATTTTGTTTACTTTGCATAATTTTGTATC  730

seq1  ACTTTTCTATTCCATCTTGTTTGAGTGTGTATGTGCATGTGCATGTGTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTATTCCATCTTGTTTGAGTGTGTATGTGCATGTGCATGTGTGG  780

seq1  AGGTTAGGGACAGCTTGTGGGAGTTGTGTTTTTCCTCCTCCTATCAGGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGGGACAGCTTGTGGGAGTTGTGTTTTTCCTCCTCCTATCAGGTG  830

seq1  GGTTCTGGGGGGCACCCTGGAGTGAGTGCTCAGACTGTAGGCTCATTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGGGGGCACCCTGGAGTGAGTGCTCAGACTGTAGGCTCATTTAC  880

seq1  ATGCAGAGGCATCTCATTGGCCCCCGAATATCATGAGATGCAGGTGACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGGCATCTCATTGGCCCCCGAATATCATGAGATGCAGGTGACCT  930

seq1  GTGAGCGTGATAGAGTCTGGTTTTCTCTTTTGCTAGAATCAGGGAGACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCGTGATAGAGTCTGGTTTTCTCTTTTGCTAGAATCAGGGAGACTT  980

seq1  CAAATCTCATCCCCATGGGTCCATGACTCTCTTCCTTCAATGAAAGCAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTCATCCCCATGGGTCCATGACTCTCTTCCTTCAATGAAAGCAAG  1030

seq1  AATTC  1054
      |||||
seq2  AATTC  1035