BAC Information

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BAC

Clone NameB6Ng01-143A19
Chromosome6 (Build37)
Map Location 52,730,260 - 52,889,471
singlet/doubletdoublet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik, Cpvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143A19.bB6Ng01-143A19.g
ACCDH941091DH941092
length7631,038
definitionDH941091|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A19, 5' end.DH941092|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,730,260 - 52,731,021)(52,888,956 - 52,889,471)
sequence
gaattccaggacagtcagagctacatagtaagaacctgtctcaagacaaa
caaataaaaacaaaccacaacaaagccagttcaggaactaagaaaggggg
gagggaaaagggtgtggggacagtgtgctcaaactctgttaggcagtggg
aattgggtctgtttgttaggcagtgggaattgggtctgtttgttaggcag
tgggaattgggtctgtttgttaggcagtgggaattgggtctgtttgttag
gcagtgggaattgggtctgtttgttaggcagtgggaattggatctgtttg
ttaggcagtgggaattgggtctgttaggcagtgggaattgggtctgtttg
ttaggcagtgagaattgggtctatttgttaggcagtgggaactgggtctg
aagagttggaccttggttgcgcatgcagcatttccagtttgagaggtaag
cggggctagtagaaaaaagtgtcacactctgagggacagcctagaaactc
aggcacactctgtaggaaagcctagaaactgtcacactctgagggacagc
acaggaactctgtcacattctgtgggacagcccagaaactcccacaggtg
gtctgaaaaaagtttttaaagaaattggttttgtgactcacatgagaaaa
atattaaggtgttcccctaacacctgttacacacacacctgttcacagct
gccatttgggcagaccccatgtcactgtccacagcccttgctgtttctgt
cacttgttcccat
gaattccactgtatattctgtcttgtgtctttcatgtaaagtgttctcca
ggtctgtctgtgttgtgcttgctttggtacttcacaccatggttaaacgg
tatttcactgtatgaatgtggcatgtcttgcttagccatcagccttgggt
tgacttggttcttttcattctgcatttaatccagatagcactgctctgag
catttgtgtacaaatctttgaccaactggttttgattcacttgggtaagt
gacatgaactagaatcattaggcatgtggtaacaactgtctgcttaactc
agaactagctgtgcaacgattgtgggtctcgagtgttcactgagagaggc
acagcagagaactcgtggcatccctctgggtgcctcctgctgactcgtgc
taaggctgaggcctggctctctctgctaggtcatgccactgctgctgatt
tgtgtgtgctatccttactctactgaactgaactgctgttgtatctgtga
ggtgtttgcaagtggattgagctgccgctgctaacctgtgaactgaactg
ctgatttccagcaacacagaagggagttaaagaacctttctaaacaggtc
cacttccccatatcctttctttcccactacctctggtgagtggtaggcta
caatggaggttaaagtgtttaagaaccatcattaaaaataaagtttaaat
ctcagcacttgggaggcagagacaggcagatttctgagtttgaggccagc
ctggtctacagagtgagttccaggacagccagggctacacagagaaactc
tgtctcaaaaaaaaaaaaaaagttaaaaaaattaagttatagtttgctta
catccattcttcttaaaaacaaaacaaaacaaacaaacaaagcttataag
catgtctcaaagcccaggatcccagtaaggagtagtgtagcagccatcag
gcagctgacttggagagaagtcataccccccaccacccccgaggccaact
agctcatcatcctcttgcccagtgcattcctagggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52730260_52731021
seq2: B6Ng01-143A19.b_42_804

seq1  GAATTCCAGGACAGTCAGAGCTACATAGTAAGAACCTGTCTCAAGACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGTCAGAGCTACATAGTAAGAACCTGTCTCAAGACAAA  50

seq1  CAAATAAAAACAAACCACAACAAAGCCAGTTCAGGAACTAAGAAAGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAAACAAACCACAACAAAGCCAGTTCAGGAACTAAGAAAGGGGG  100

seq1  GAGGGAAAAGGGTGTGGGGACAGTGTGCTCAAACTCTGTTAGGCAGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAAGGGTGTGGGGACAGTGTGCTCAAACTCTGTTAGGCAGTGGG  150

seq1  AATTGGGTCTGTTTGTTAGGCAGTGGGAATTGGGTCTGTTTGTTAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGTCTGTTTGTTAGGCAGTGGGAATTGGGTCTGTTTGTTAGGCAG  200

seq1  TGGGAATTGGGTCTGTTTGTTAGGCAGTGGGAATTGGGTCTGTTTGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTGGGTCTGTTTGTTAGGCAGTGGGAATTGGGTCTGTTTGTTAG  250

seq1  GCAGTGGGAATTGGGTCTGTTTGTTAGGCAGTGGGAATTGGATCTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGAATTGGGTCTGTTTGTTAGGCAGTGGGAATTGGATCTGTTTG  300

seq1  TTAGGCAGTGGGAATTGGGTCTGTTAGGCAGTGGGAATTGGGTCTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAGTGGGAATTGGGTCTGTTAGGCAGTGGGAATTGGGTCTGTTTG  350

seq1  TTAGGCAGTGAGAATTGGGTCTATTTGTTAGGCAGTGGGAACTGGGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAGTGAGAATTGGGTCTATTTGTTAGGCAGTGGGAACTGGGTCTG  400

seq1  AAGAGTTGGACCTTGGTTGCGCATGCAGCATTTCCAGTTTGAGAGGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGGACCTTGGTTGCGCATGCAGCATTTCCAGTTTGAGAGGTAAG  450

seq1  CGGGGCTAGTAGAAAAAAGTGTCACACTCTGAGGGACAGCCTAGAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTAGTAGAAAAAAGTGTCACACTCTGAGGGACAGCCTAGAAACTC  500

seq1  AGGCACACTCTGTAGGAAAGCCTAGAAACTGTCACACTCTGAGGGACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACTCTGTAGGAAAGCCTAGAAACTGTCACACTCTGAGGGACAGC  550

seq1  ACAGGAACTCTGTCACATTCTGTGGGACAGCCCAGAAACTCCCACAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACTCTGTCACATTCTGTGGGACAGCCCAGAAACTCCCACAGGTG  600

seq1  GTCTG-AAAAAGTTTTTAAAGAAATTGGTTTTGTGACTCACATGAGAAAA  649
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAAAAAGTTTTTAAAGAAATTGGTTTTGTGACTCACATGAGAAAA  650

seq1  ATATTAAGGTGTTCCCCTAACACCTGTTACACACACACCTGTTCACAGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGGTGTTCCCCTAACACCTGTTACACACACACCTGTTCACAGCT  700

seq1  GCCATTTGGGCAGACCCCATGTCACTGTCCACAAGCCCTGCTGTTTCTGT  749
      |||||||||||||||||||||||||||||||||  || ||||||||||||
seq2  GCCATTTGGGCAGACCCCATGTCACTGTCCACAGCCCTTGCTGTTTCTGT  750

seq1  CACTTGTTCCCAT  762
      |||||||||||||
seq2  CACTTGTTCCCAT  763

seq1: chr6_52888956_52889471
seq2: B6Ng01-143A19.g_613_1105 (reverse)

seq1  TTTCCCTAGGAATGCACTGGTGCAAGAGGGATGATGTGGCTAGTTGTGGG  50
      |||||||||||||||||||| |||||| ||||||||  |||||||   ||
seq2  TTTCCCTAGGAATGCACTGG-GCAAGA-GGATGATG-AGCTAGTT---GG  44

seq1  CCCGGGGGGTGGGTGGGGGGTTATGACTTCTCTCCAAGTCAGCCTGCCCT  100
      ||  |||||| ||||||||| ||||||||||||||||||||| ||| |||
seq2  CCTCGGGGGT-GGTGGGGGG-TATGACTTCTCTCCAAGTCAG-CTG-CCT  90

seq1  GAATGGCTGGCTACACTTACTTCCTTACTTGGGAATCCTTGGGCTTTGAG  150
      | |||||| ||||||| ||| ||||||||  || |||| |||||||||||
seq2  G-ATGGCT-GCTACAC-TAC-TCCTTACT--GGGATCC-TGGGCTTTGAG  133

seq1  ACATGCTTAATAAGCTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTAAGA  200
      |||||||| |||||| |||||||   |||||||||||||| |||||||||
seq2  ACATGCTT-ATAAGC-TTTGTTT--GTTTGTTTTGTTTTG-TTTTTAAGA  178

seq1  AG-ATGGATGTAAGCAAACTATAACTTTAATTTTTTTAAACTTTTTTTTT  249
      || |||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  AGAATGGATGTAAGCAAACTATAAC-TTAATTTTTTT-AACTTTTTTTTT  226

seq1  TTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAC  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAC  276

seq1  TCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGTCTCTGCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGTCTCTGCCTC  326

seq1  CCAAGTGCTGAGATTTAAACTTTATTTTTAATGATGGTTCTTAAACACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTGAGATTTAAACTTTATTTTTAATGATGGTTCTTAAACACTT  376

seq1  TAACCTCCATTGTAGCCTACCACTCACCAGAGGTAGTGGGAAAGAAAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCCATTGTAGCCTACCACTCACCAGAGGTAGTGGGAAAGAAAGGA  426

seq1  TATGGGGAAGTGGACCTGTTTAGAAAGGTTCTTTAACTCCCTTCTGTGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGAAGTGGACCTGTTTAGAAAGGTTCTTTAACTCCCTTCTGTGTT  476

seq1  GCTGGAAATCAGCAGTT  516
      |||||||||||||||||
seq2  GCTGGAAATCAGCAGTT  493