BAC Information

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BAC

Clone NameB6Ng01-143E02
Chromosome6 (Build37)
Map Location 66,416,536 - 66,417,723
singlet/doubletsinglet
Overlap genenone
Upstream gene9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143E02.b
ACCDH941240
length1,163
definitionDH941240|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E02, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaggtagagatcttctaggctttcttccgtgtccaagttgtgaa
cagctagtgagtacaactagaaaaggagaaaataatgtgattctttaaaa
tattttaaagaaataaatcttgcaaggaaactgtaactaaaaacatcctg
gagacttttctgcggaactataatcttcaagtttgtgtttatttctctct
tcaatctatctaatcttccacaattgtttagggttaagaaagctgaagca
agatatctgatgaatatttaatttccacttgtttgtacgtatgtgattat
tcatataatagtcccatggatttttatgacatctgctttgttttaaatag
taaagacattttttttttgtttttcctaaaactgagtttttacttgagac
cctagtgccatctactgaaacaaattaaaactacagccttcttaccattg
ttgaataagcacaacttccaaagtagcttagcccttgtccttacaatgtt
tcgttataaaaaaaacacttattgtttttccgcatatatccaggaaaata
gtctcaactctctgtttcaactgaagaatctaaaattcataattataagt
ctttgatgagcatttcctggtagaaacacagtttctgggtgaaccaaaca
gaatttgccctgttctaggaacacaaagatgaactgaaagttctatttcc
atatattctagcttaggaagagtgcatctcagtggtactgtgctgcttgg
tacacacaagtacagagttccatcgccagttttgaaaaaaataagttcat
tagatcgaaaaataatcatacattttgcaaacatttctaaatgttcattc
tgagaataacaacgtgaaagttattttttgaggaggttttagacactgga
tatctttttaactgagaaaaagtaggcaaaagtctgatatgtatttagac
agtcttactatttagtatcagagctgcagcagcacacacgtcaactgagc
tcttctatgagctgtgtgtgttactgtcactctgatagttatagatagca
cagtatagtacatactttgaaatgctgcaagtatggagggaaatatcaat
tgtaatcaaaatgaaaataccttaatctcctccaatctagtacctggctt
attgctgttagct
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66416536_66417723
seq2: B6Ng01-143E02.b_47_1209

seq1  GAATTCTAGGTAGAGATCTTCTAGGCTTTCTTCCGTGTCCAAGTTGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTAGAGATCTTCTAGGCTTTCTTCCGTGTCCAAGTTGTGAA  50

seq1  CAGCTAGTGAGTACAACTAGAAAAGGAGAAAATAATGTGATTCTTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGTGAGTACAACTAGAAAAGGAGAAAATAATGTGATTCTTTAAAA  100

seq1  TATTTTAAAGAAATAAATCTTGCAAGGAAACTGTAACTAAAAACATCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAGAAATAAATCTTGCAAGGAAACTGTAACTAAAAACATCCTG  150

seq1  GAGACTTTTCTGCGGAACTATAATCTTCAAGTTTGTGTTTATTTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTTCTGCGGAACTATAATCTTCAAGTTTGTGTTTATTTCTCTCT  200

seq1  TCAATCTATCTAATCTTCCACAATTGTTTAGGGTTAAGAAAGCTGAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTATCTAATCTTCCACAATTGTTTAGGGTTAAGAAAGCTGAAGCA  250

seq1  AGATATCTGATGAATATTTAATTTCCACTTGTTTGTACGTATGTGATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCTGATGAATATTTAATTTCCACTTGTTTGTACGTATGTGATTAT  300

seq1  TCATATAATAGTCCCATGGATTTTTATGACATCTGCTTTGTTTTAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAATAGTCCCATGGATTTTTATGACATCTGCTTTGTTTTAAATAG  350

seq1  TAAAGACATTTTTTTTTTGTTTTTCCTAAAACTGAGTTTTTACTTGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACATTTTTTTTTTGTTTTTCCTAAAACTGAGTTTTTACTTGAGAC  400

seq1  CCTAGTGCCATCTACTGAAACAAATTAAAACTACAGCCTTCTTACCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGCCATCTACTGAAACAAATTAAAACTACAGCCTTCTTACCATTG  450

seq1  TTGAATAAGCACAACTTCCAAAGTAGCTTAGCCCTTGTCCTTACAATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAGCACAACTTCCAAAGTAGCTTAGCCCTTGTCCTTACAATGTT  500

seq1  TCGTTATAAAAAAAACACTTATTGTTTTTCCGCATATATCCAGGAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTATAAAAAAAACACTTATTGTTTTTCCGCATATATCCAGGAAAATA  550

seq1  GTCTCAACTCTCTGTTTCAACTGAAGAATCTAAAATTCATAATTATAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAACTCTCTGTTTCAACTGAAGAATCTAAAATTCATAATTATAAGT  600

seq1  CTTTGATGAGCATTTCCTGGTAGAAACACAGTTTCTGGGTGAACCAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGAGCATTTCCTGGTAGAAACACAGTTTCTGGGTGAACCAAACA  650

seq1  GAATTTGCCCTGTTCTAGGAACACAAAGATGAACTGAAAGTTCTATTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCCCTGTTCTAGGAACACAAAGATGAACTGAAAGTTCTATTTCC  700

seq1  ATATATTCTAGCTTAGGAAGAGTGCATCTCAGTGGTACTGTGCTGCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCTAGCTTAGGAAGAGTGCATCTCAGTGGTACTGTGCTGCTTGG  750

seq1  TACACACAAGGTACAGAGTTCCATCGCCAGTTTTGAAAAAAATAAGTTCA  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAA-GTACAGAGTTCCATCGCCAGTTTTGAAAAAAATAAGTTCA  799

seq1  TTAGATCGAAAAATAATCATACATTTTGCAAACATTTCTAAATGTTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCGAAAAATAATCATACATTTTGCAAACATTTCTAAATGTTCATT  849

seq1  CTGAGAATAACAACGTGAAAGTTA-TTTTTGA-GAGGTTTTAGACAACTG  898
      |||||||||||||||||||||||| ||||||| |||||||||||| ||||
seq2  CTGAGAATAACAACGTGAAAGTTATTTTTTGAGGAGGTTTTAGAC-ACTG  898

seq1  GATATCTTTTTAACTGAGAAAAAGTAGGCAAAAGTTCTGATAATGTATTT  948
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  GATATCTTTTTAACTGAGAAAAAGTAGGCAAAAG-TCTGAT-ATGTATTT  946

seq1  AGACAGTCTTACTATTTAGTATCAGAGCTGCAGCAGCACACACGTCAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCTTACTATTTAGTATCAGAGCTGCAGCAGCACACACGTCAACT  996

seq1  GAAGCTCTTCTATGAGCTGTGTGTGTTTACTGTCACTTCTTGATTAGTTA  1048
      | ||||||||||||||||||||||| |||||||||||   ||| ||||||
seq2  G-AGCTCTTCTATGAGCTGTGTGTG-TTACTGTCACT--CTGA-TAGTTA  1041

seq1  TAGATAGCACAGTATAGTAACAATACCTTTGAAATGCTGGCAAGTAATGG  1098
      |||||||||||||||||||   ||| |||||||||||| |||||| ||||
seq2  TAGATAGCACAGTATAGTA--CATA-CTTTGAAATGCT-GCAAGT-ATGG  1086

seq1  AGTGACAATATTCAAATTGTAAAATACAACATGAAAATTAACTTTATATC  1148
      || || |||||   ||||||||    ||| ||||||||  || ||| |||
seq2  AGGGA-AATAT--CAATTGTAA---TCAAAATGAAAAT--ACCTTA-ATC  1127

seq1  TCCTCACATTCTTAGTTACCT-GCTTATTTTGCTGTTAGCT  1188
      ||||| || || ||| ||||| |||||  ||||||||||||
seq2  TCCTC-CAATC-TAG-TACCTGGCTTA--TTGCTGTTAGCT  1163