BAC Information

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BAC

Clone NameB6Ng01-143L21
Chromosome6 (Build37)
Map Location 98,232,991 - 98,361,444
singlet/doubletdoublet
Overlap geneGm765
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, LOC666019
Downstream geneLOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143L21.bB6Ng01-143L21.g
ACCDH941599DH941600
length1,0151,014
definitionDH941599|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L21, 5' end.DH941600|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,232,991 - 98,234,036)(98,360,427 - 98,361,444)
sequence
gaattctttcgctcctcatgcttcaattataagtacttaatttgtttctc
tttctactgctgactggagtcccaatctgttttattttttcatctggcta
gcatggtggtttcagaagccccttgttttgaaaagtttatttggttcata
gcaaatgaaacaaactataagtaagaattattgtcatgtgccagggctca
tcaccgggatgcaacaattaagatattaaacagtgttccaaattttcaat
aacatgggctattagaagatacactatggatctttgagaaatggtttgaa
agcactgacttattctcttgaaagcctgaaccatttgttatacggtccaa
gttaatagctcactaactcatcataaccttgcatggtcaaataacttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttctgcttctgcttctgcttctgcttctgcttctgcttctgcttc
tgcttctgcttctgcttctgcttctgcttctgcttctgcttctgcttctg
cttcttctgcttcttctgcttcttctgcttctgcttctgcttctgcttct
tctgctgctcctgctcctgctcctgctcctgctcctgctcctgctcctgc
tcctgctcctgctcctgctcctgctccttctccttctccttctccttctc
cttctccttctccttctccttctccttctccttctccttctccttctcct
tctccttctccttctccttctctcttctctcttcttctctctcttctctc
tcatcttcttcttcggtagtcattgtttattacccatagagaccattggc
tgacacgtttctagcctgtgctgtgtctttggacatcatgatgtctacta
ggagaggtagcacatggctacactgatgatgtctatagctaacctgatgc
atcagtctgggctgagtagtgtgcaggctagtgagtgaccatgtgactgt
catactttgttgcac
gaattcacttacacttggggatgtgcgcaaggcatctgttcatgaatagc
ggaatgatgaccaagtcctgatggggaaggcacgctgccatctttccctg
aaatacatcccaactgagaaatcaattgcttcatgcctgggttttcttgt
atgtcgcttttttcccattaaatataaaagtcctgtcgatgattttttct
aagccacctacttttatgctggatatttgttacacgacaaaggaaatgac
ctatcaggcgaaactcatctgtgtgttcctttatgtgtctacacttgaac
tttctatgagaaattagtatttgattcactagctaggcatcatggctctg
aatttcaaaaatcatttttaattacatggtgcacaaaaaatacctcctaa
tctttcatctgccacaaaaaagaaaaaaaaaaacaacaatatgaatcatg
ttctaacccttacagtacctctagttagaagagctaacagagtcatatac
attcattcattcattcattcatgaaatagtttatattttgaactttaaat
attatgttttcattttgtatgtttaaaatttgataaatttcttcacaaag
atcagatagtcgtgacaaatatgatttctgaaaacaaatggtcacataca
ttctccagggagtaataattgtcactagcccaactctgcttttaaattca
gagaaccagacagtactgttgactttgggatggagaccgggttgtgccag
ggacactgatgtctagagggtcttctggatggtagaaggctgagcatgca
tttgtggttctcagactgttccatgccctcttgctcacgattttgtgcta
tcctaccattacccagagagccaatcatctagtggtgtggcccagtgagt
gttctgaattttcatagatcacacatgagtgttaggagtgccttttcaaa
gcttgtttcacttgtcctgggtgatgtcagagagacatgtcagaagagaa
cactgatttctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98232991_98234036
seq2: B6Ng01-143L21.b_47_1061

seq1  GAATTCTTTCGCTCCTCATGCTTCAATTATAAGTACTTAATTTGTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCGCTCCTCATGCTTCAATTATAAGTACTTAATTTGTTTCTC  50

seq1  TTTCTACTGCTGACTGGAGTCCCAATCTGTTTTATTTTTTCATCTGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGCTGACTGGAGTCCCAATCTGTTTTATTTTTTCATCTGGCTA  100

seq1  GCATGGTGGTTTCAGAAGCCCCTTGTTTTGAAAAGTTTATTTGGTTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGGTTTCAGAAGCCCCTTGTTTTGAAAAGTTTATTTGGTTCATA  150

seq1  GCAAATGAAACAAACTATAAGTAAGAATTATTGTCATGTGCCAGGGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGAAACAAACTATAAGTAAGAATTATTGTCATGTGCCAGGGCTCA  200

seq1  TCACCGGGATGCAACAATTAAGATATTAAACAGTGTTCCAAATTTTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGGGATGCAACAATTAAGATATTAAACAGTGTTCCAAATTTTCAAT  250

seq1  AACATGGGCTATTAGAAGATACACTATGGATCTTTGAGAAATGGTTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGCTATTAGAAGATACACTATGGATCTTTGAGAAATGGTTTGAA  300

seq1  AGCACTGACTTATTCTCTTGAAAGCCTGAACCATTTGTTATACGGTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGACTTATTCTCTTGAAAGCCTGAACCATTTGTTATACGGTCCAA  350

seq1  GTTAATAGCTCACTAACTCATCATAACCTTGCATGGTCAAATAACTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGCTCACTAACTCATCATAACCTTGCATGGTCAAATAACTTCTT  400

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  450

seq1  TCTTCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTC  500

seq1  TGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTG  550

seq1  CTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTGCTTCTGCTTCTGCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTGCTTCTGCTTCTGCTTCT  600

seq1  TCTGCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGC  650

seq1  TCCTGCTCCTGCTCCTGCTCCTGCTCCTTCTCCTTCTCCTTCTCCTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCCTGCTCCTGCTCCTGCTCCTTCTCCTTCTCCTTCTCCTTCTC  700

seq1  CTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCT  750

seq1  TCTCCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  800
      |||||||||||||||||||||         ||||||   |||||||||  
seq2  TCTCCTTCTCCTTCTCCTTCT--------CTCTTCT--CTCTTCTTCTCT  790

seq1  TTCTTCTTCTTCATCTTCTTCTTCGGTAGTCATTGTTTATTACCCATAAG  850
       ||||||   ||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTTCTCTCTCATCTTCTTCTTCGGTAGTCATTGTTTATTACCCAT-AG  839

seq1  AGACCATTGGCTGACACGTTTCTAGCCTGTGCTGTGTCTTTGGACATCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTGGCTGACACGTTTCTAGCCTGTGCTGTGTCTTTGGACATCAT  889

seq1  GATGTCTACTAGGATGAGGTAGCACATGCCAAACACTGATGATGTCTATT  950
      |||||||||||||| ||||||||||||| |  |||||||||||||||| |
seq2  GATGTCTACTAGGA-GAGGTAGCACATGGC-TACACTGATGATGTCTA-T  936

seq1  AGCCAAACACTGATGCCATCAGTTCCTGGGCGTGAAGTAGTGTGGAAGAG  1000
      ||| ||   |||||| |||||||  |||||| || ||||||||| |   |
seq2  AGCTAA--CCTGATG-CATCAGT--CTGGGC-TG-AGTAGTGTGCA--GG  977

seq1  CTAGTGAGGGTGACCCATGTAGACTGTCATTACTTTTGTTTTGCAC  1046
      |||||||  |||| |||||| |||||||| |||||   | ||||||
seq2  CTAGTGA--GTGA-CCATGT-GACTGTCA-TACTT---TGTTGCAC  1015

seq1: chr6_98360427_98361444
seq2: B6Ng01-143L21.g_69_1082 (reverse)

seq1  AAGA-AAATCAGTGTTCTCTTTCTGACAATGTTCTCTCTGACATCACCCA  49
      |||| |||||||||||||| ||||||| ||| ||||||||||||||||||
seq2  AAGAGAAATCAGTGTTCTC-TTCTGAC-ATG-TCTCTCTGACATCACCCA  47

seq1  GGACAAGTGAAACAAGCTTTTGAAAAGGCACTCCTAACACTCATGTTGTG  99
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  GGACAAGTGAAACAAGC-TTTGAAAAGGCACTCCTAACACTCATG-TGTG  95

seq1  ATTCTATGAAAATTCAGAACACTCACTGGGCCACA-CACTAGATGATTGG  148
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  A-TCTATGAAAATTCAGAACACTCACTGGGCCACACCACTAGATGATTGG  144

seq1  CTCTCTGGGTAATGGTAGGATAGCACAAAATCGTGAGCAAGAGGGCATGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGGTAATGGTAGGATAGCACAAAATCGTGAGCAAGAGGGCATGG  194

seq1  AACAGTCTGAGAACCACAAATGCATGCTCAGCCTTCTACCATCCAGAAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTGAGAACCACAAATGCATGCTCAGCCTTCTACCATCCAGAAGA  244

seq1  CCCTCTAGACATCAGTGTCCCTGGCACAACCCGGTCTCCATCCCAAAGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAGACATCAGTGTCCCTGGCACAACCCGGTCTCCATCCCAAAGTC  294

seq1  AACAGTACTGTCTGGTTCTCTGAATTTAAAAGCAGAGTTGGGCTAGTGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACTGTCTGGTTCTCTGAATTTAAAAGCAGAGTTGGGCTAGTGAC  344

seq1  AATTATTACTCCCTGGAGAATGTATGTGACCATTTGTTTTCAGAAATCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTACTCCCTGGAGAATGTATGTGACCATTTGTTTTCAGAAATCAT  394

seq1  ATTTGTCACGACTATCTGATCTTTGTGAAGAAATTTATCAAATTTTAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCACGACTATCTGATCTTTGTGAAGAAATTTATCAAATTTTAAAC  444

seq1  ATACAAAATGAAAACATAATATTTAAAGTTCAAAATATAAACTATTTCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATGAAAACATAATATTTAAAGTTCAAAATATAAACTATTTCAT  494

seq1  GAATGAATGAATGAATGAATGTATATGACTCTGTTAGCTCTTCTAACTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATGAATGAATGAATGTATATGACTCTGTTAGCTCTTCTAACTAG  544

seq1  AGGTACTGTAAGGGTTAGAACATGATTCATATTGTTGTTTTTTTTTTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTGTAAGGGTTAGAACATGATTCATATTGTTGTTTTTTTTTTTCT  594

seq1  TTTTTGTGGCAGATGAAAGATTAGGAGGTATTTTTTGTGCACCATGTAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGGCAGATGAAAGATTAGGAGGTATTTTTTGTGCACCATGTAAT  644

seq1  TAAAAATGATTTTTGAAATTCAGAGCCATGATGCCTAGCTAGTGAATCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGATTTTTGAAATTCAGAGCCATGATGCCTAGCTAGTGAATCAA  694

seq1  ATACTAATTTCTCATAGAAAGTTCAAGTGTAGACACATAAAGGAACACAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAATTTCTCATAGAAAGTTCAAGTGTAGACACATAAAGGAACACAC  744

seq1  AGATGAGTTTCGCCTGATAGGTCATTTCCTTTGTCGTGTAACAAATATCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTTTCGCCTGATAGGTCATTTCCTTTGTCGTGTAACAAATATCC  794

seq1  AGCATAAAAGTAGGTGGCTTAGAAAAAATCATCGACAGGACTTTTATATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAAGTAGGTGGCTTAGAAAAAATCATCGACAGGACTTTTATATT  844

seq1  TAATGGGAAAAAAGCGACATACAAGAAAACCCAGGCATGAAGCAATTGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGAAAAAAGCGACATACAAGAAAACCCAGGCATGAAGCAATTGAT  894

seq1  TTCTCAGTTGGGATGTATTTCAGGGAAAGATGGCAGCGTGCCTTCCCCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTTGGGATGTATTTCAGGGAAAGATGGCAGCGTGCCTTCCCCAT  944

seq1  CAGGACTTGGTCATCATTCCGCTATTCATGAACAGATGCCTTGCGCACAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTGGTCATCATTCCGCTATTCATGAACAGATGCCTTGCGCACAT  994

seq1  CCCCAAGTGTAAGTGAATTC  1018
      ||||||||||||||||||||
seq2  CCCCAAGTGTAAGTGAATTC  1014