BAC Information

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BAC

Clone NameB6Ng01-144B12
Chromosome6 (Build37)
Map Location 21,912,387 - 22,073,408
singlet/doubletdoublet
Overlap geneIng3, A430107O13Rik
Upstream geneKcnd2, LOC100041343, Tspan12, LOC100041358
Downstream geneLOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1, Aass
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144B12.bB6Ng01-144B12.g
ACCDH941860DH941861
length1,108984
definitionDH941860|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B12, 5' end.DH941861|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,912,387 - 21,913,504)(22,072,431 - 22,073,408)
sequence
gaattctcttgcttcttctgagtcatctagtgaacttcatcaataatata
tttagtaaaacaatttcaagtagagagatgggatgaattaagtgtatggt
gtggggagatcgcctgcatacactttagagcaccctcccaggcgagactc
tagcattctgcctctctagtgtctgtggtacagactagaccattctttct
ttcacttggaacatactgtttgataatgtccatatttatgattgctctat
tccatctatttacatgcagtgtgctcttcccttcgtcatttcttccttgg
tgtctacctcggcccagggtcacatggctatgtcttttattcttgtactg
cagaacctctccctttgctgcatttacattctatcttcttcttctggaag
actctttataatgttaaaaatgttaggaattttgatttgttggctaaatt
ctaatttcacagaagatgcattatcttctgtgaaggctgggatttttttt
acagtcttcacatgccctccattagcgccaagtacatagtagaaactcaa
tgtttattgcaagtttaattttagataaattggtggaaggttttcattgt
ggtgttttagaatgaatatatttaattattctgagttcccttaagattaa
atttttgacaatgaaagagacactatactgttgagtaatggattttgtgg
tcattcttttgttgaaagcaagatgctattacaggatgctcaaaagttat
ctgtgtcctattaattggagtaactgtcccaaacatatgacaccagtagg
ctttaaatattataactatgacttctgccaaattctgaagagtaatttgt
atgtaaatattaagtgataacctggctttaatggctgaaaaatcataaag
aaatatgttgaaagttgttgctaacattacaaaatataagcaataggaca
ttattactagtttttctatttgaatatgtgtctctacacttaaaagaaaa
aaaagtttaatcctataacagtttcgaaggattagataaattgagatgca
ttatctacttaattgtagatattaatcttaagctgtatgcacagctgtat
aatcttgg
gaattcacagaaatgatatgttgtcacaacactatccaaagatttaaaaa
aaaaacatacttgataagaccaactgtctgagctaagccaacagtacctt
ggtagtaagggggtgggggctgtgagtgcaggagacaggatgtgtgggac
cacagtttaggaatgcaagtttcccccttgggccttctgagtgctctaga
ggtgaaaatatctcagagcatctgtgcaggtagccccagtgtggatcact
gccggtgaagggtttcatagacttgcacctaccagcccaggtttccacac
aagtatttgcctcctagtgtgaccctgagatggagtgatgctgtgggaag
aggtgtgtatgacagacactatcagtacctttgtgagaatttttacattc
tcgtcttccaaattctccaagtatggggttcaaaaaaaaaaaaaaaaaaa
aaaaacaatggaggaatatactatgataacctgtacagagattttagtgt
ataaccattgtgctagcctaccattaaaaaaaaaaaaaatcagcactcct
ctgaaacactccaccctggctgtcagcatctagcttgcagtgctaacagt
catgaatatttaagcaaattaatgttttagatcagttcccctggagtcat
cctggagtaccctggcatcctagattgccttttaaagagttctaagagcc
tctgtgaagtatcctaaagtgtataaacatctaccattgtttcaaagtat
ccatgaataattcctcaacaactgtgagctttttttacatcactttcttt
cataaaccttttcacaggcccactgatgtcaatataaacaattgttgccc
cttagaccagaaaaaaaaaatccagaaagctcaaataataggtaataatt
acaaattaatttcaagtaaggattaaatcgcacaataaaaataaccggtg
aacgcaaaaccgcttgtcaggtgtgcaggtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21912387_21913504
seq2: B6Ng01-144B12.b_48_1155

seq1  GAATTCTCTTGCTTCTTCTGAGTCATCTAGTGAACTTCATCAATAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGCTTCTTCTGAGTCATCTAGTGAACTTCATCAATAATATA  50

seq1  TTTAGTAAAACAATTTCAAGTAGAGAGATGGGATGAATTAAGTGTATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAAACAATTTCAAGTAGAGAGATGGGATGAATTAAGTGTATGGT  100

seq1  GTGGGGAGATCGCCTGCATACACTTTAGAGCACCCTCCCAGGCGAGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGATCGCCTGCATACACTTTAGAGCACCCTCCCAGGCGAGACTC  150

seq1  TAGCATTCTGCCTCTCTAGTGTCTGTGGTACAGACTAGACCATTCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCTGCCTCTCTAGTGTCTGTGGTACAGACTAGACCATTCTTTCT  200

seq1  TTCACTTGGAACATACTGTTTGATAATGTCCATATTTATGATTGCTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGGAACATACTGTTTGATAATGTCCATATTTATGATTGCTCTAT  250

seq1  TCCATCTATTTACATGCAGTGTGCTCTTCCCTTCGTCATTTCTTCCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTATTTACATGCAGTGTGCTCTTCCCTTCGTCATTTCTTCCTTGG  300

seq1  TGTCTACCTCGGCCCAGGGTCACATGGCTATGTCTTTTATTCTTGTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACCTCGGCCCAGGGTCACATGGCTATGTCTTTTATTCTTGTACTG  350

seq1  CAGAACCTCTCCCTTTGCTGCATTTACATTCTATCTTCTTCTTCTGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCTCTCCCTTTGCTGCATTTACATTCTATCTTCTTCTTCTGGAAG  400

seq1  ACTCTTTATAATGTTAAAAATGTTAGGAATTTTGATTTGTTGGCTAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTATAATGTTAAAAATGTTAGGAATTTTGATTTGTTGGCTAAATT  450

seq1  CTAATTTCACAGAAGATGCATTATCTTCTGTGAAGGCTGGGATTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCACAGAAGATGCATTATCTTCTGTGAAGGCTGGGATTTTTTTT  500

seq1  ACAGTCTTCACATGCCCTCCATTAGCGCCAAGTACATAGTAGAAACTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTCACATGCCCTCCATTAGCGCCAAGTACATAGTAGAAACTCAA  550

seq1  TGTTTATTGCAAGTTTAATTTTAGATAAATTGGTGGAAGGTTTTCATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTGCAAGTTTAATTTTAGATAAATTGGTGGAAGGTTTTCATTGT  600

seq1  GGTGTTTTAGAATGAATATATTTAATTATTCTGAGTTCCCTTAAGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTAGAATGAATATATTTAATTATTCTGAGTTCCCTTAAGATTAA  650

seq1  A-TTTTGACAATGAAAGAGACACTATACTGTTGAGTAATGGATTTTGTGG  699
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGACAATGAAAGAGACACTATACTGTTGAGTAATGGATTTTGTGG  700

seq1  TCATTCTTTTGTTGAAAGCAAGATGCTATTACAGGATGCTCAAAAGTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTTGTTGAAAGCAAGATGCTATTACAGGATGCTCAAAAGTTAT  750

seq1  CTGTGTCCTATTAATTGGAGTAACTGTCCCAAACATATGACACCAGTAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTATTAATTGGAGTAACTGTCCCAAACATATGACACCAGTAGG  800

seq1  CTTTAAATATTATAACTATGACTTCTGCCAAATTCTGAAGAGTAATTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATATTATAACTATGACTTCTGCCAAATTCTGAAGAGTAATTTGT  850

seq1  ATGTAAATATTAAGTGATAACCTGGCTTTAAATGGCTGAAAAATCATAAA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGTAAATATTAAGTGATAACCTGGCTTT-AATGGCTGAAAAATCATAAA  899

seq1  GAAATATGTTGAAAGTTGTTGCTAACA-TACAAAATATAAGCAATAGGAC  948
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAATATGTTGAAAGTTGTTGCTAACATTACAAAATATAAGCAATAGGAC  949

seq1  ACTATTACTAGTTTTTCTATTTGAATTATGTGTCTCTACACTTAAAAAGA  998
      | ||||||||||||||||||||||| |||||||||||||||||||||   
seq2  ATTATTACTAGTTTTTCTATTTGAA-TATGTGTCTCTACACTTAAAA--G  996

seq1  AAAAAAAAGTTTATTCCTATAACAGTTTCAGAAGGAATTAGATATAAATG  1048
      ||||||||||||| ||||||||||||||| ||||| |||||||| || ||
seq2  AAAAAAAAGTTTAATCCTATAACAGTTTC-GAAGG-ATTAGATA-AATTG  1043

seq1  AGGATGCATTATCTAC-TATATGTAGATAATTAAATCTTAAGTCTGTAAT  1097
      | |||||||||||||| ||  ||||||||  | ||||||||| |||| ||
seq2  A-GATGCATTATCTACTTAATTGTAGATA--TTAATCTTAAG-CTGT-AT  1088

seq1  GCAACAGCTGTATAATCTTGG  1118
      || ||||||||||||||||||
seq2  GC-ACAGCTGTATAATCTTGG  1108

seq1: chr6_22072431_22073408
seq2: B6Ng01-144B12.g_69_1052 (reverse)

seq1  TCACACTTGCACA-CTGACAAGCGGTTTTGCAGTCACCGGTTATTTTTAT  49
      |||||| |||||| |||||||||||||||||  |||||||||||||||||
seq2  TCACACCTGCACACCTGACAAGCGGTTTTGCGTTCACCGGTTATTTTTAT  50

seq1  TGTGCGATTTAATTCTTTACTTGAAATTAATTTGTAATTATTACCTATTA  99
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  TGTGCGATTTAA-TCCTTACTTGAAATTAATTTGTAATTATTACCTATTA  99

seq1  TTGTGAGC-TTCTGGATTTTTTTTTTTCTGGTCTAAGGGGCAACATTGTT  148
      || ||||| ||||||| |||||||||||||||||||||||||||| |  |
seq2  TT-TGAGCTTTCTGGA-TTTTTTTTTTCTGGTCTAAGGGGCAACAATTGT  147

seq1  TTATATTGAC-TCAGTGGGCCTGTGAAA--GGTTATGAAAGAAAGTGATG  195
      |||||||||| |||||||||||||||||  | ||||||||||||||||||
seq2  TTATATTGACATCAGTGGGCCTGTGAAAAGGTTTATGAAAGAAAGTGATG  197

seq1  T-AAAAAAGCTCACAGTTGTTGAGGAA-TATTCATGGATACTTTGAAACA  243
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAAAAAAAGCTCACAGTTGTTGAGGAATTATTCATGGATACTTTGAAACA  247

seq1  ATGGTAGATGTTTATACACTTTAGGATACTTCACAGAGGCTCTTAGAACT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGATGTTTATACACTTTAGGATACTTCACAGAGGCTCTTAGAACT  297

seq1  CTTT-AAAGGCAATCTAGGATGCCAGGGTACTCCAGGATGACTCCAGGGG  342
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGGCAATCTAGGATGCCAGGGTACTCCAGGATGACTCCAGGGG  347

seq1  AACTGATCTAAAACATTAATTTGCTTAAATATTCATGACTGTTAGCACTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATCTAAAACATTAATTTGCTTAAATATTCATGACTGTTAGCACTG  397

seq1  CAAGCTAGATGCTGACAGCCAGGGTGGAGTGTTTCAGAGGAGTGCTGATT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAGATGCTGACAGCCAGGGTGGAGTGTTTCAGAGGAGTGCTGATT  447

seq1  TTTTTTTTTTTTAATGGTAGGCTAGCACAATGGTTATACACTAAAATCTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAATGGTAGGCTAGCACAATGGTTATACACTAAAATCTC  497

seq1  TGTACAGGTTATCATAGTATATTCCTCCATTG-TTTTTTTTTTTTTTTTT  541
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTACAGGTTATCATAGTATATTCCTCCATTGTTTTTTTTTTTTTTTTTT  547

seq1  TTTTTTGAACCCCATACTTGGAGAATTTGGAAGACGAGAATGTAAAAATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAACCCCATACTTGGAGAATTTGGAAGACGAGAATGTAAAAATT  597

seq1  CTCACAAAGGTACTGATAGTGTCTGTCATACACACCTCTTCCCACAGCAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAGGTACTGATAGTGTCTGTCATACACACCTCTTCCCACAGCAT  647

seq1  CACTCCATCTCAGGGTCACACTAGGAGGCAAATACTTGTGTGGAAACCTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATCTCAGGGTCACACTAGGAGGCAAATACTTGTGTGGAAACCTG  697

seq1  GGCTGGTAGGTGCAAGTCTATGAAACCCTTCACCGGCAGTGATCCACACT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTAGGTGCAAGTCTATGAAACCCTTCACCGGCAGTGATCCACACT  747

seq1  GGGGCTACCTGCACAGATGCTCTGAGATATTTTCACCTCTAGAGCACTCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTACCTGCACAGATGCTCTGAGATATTTTCACCTCTAGAGCACTCA  797

seq1  GAAGGCCCAAGGGGGAAACTTGCATTCCTAAACTGTGGTCCCACACATCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCCAAGGGGGAAACTTGCATTCCTAAACTGTGGTCCCACACATCC  847

seq1  TGTCTCCTGCACTCACAGCCCCCACCCCCTTACTACCAAGGTACTGTTGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTGCACTCACAGCCCCCACCCCCTTACTACCAAGGTACTGTTGG  897

seq1  CTTAGCTCAGACAGTTGGTCTTATCAAGTATGTTTTTTTTTTAAATCTTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTCAGACAGTTGGTCTTATCAAGTATGTTTTTTTTTTAAATCTTT  947

seq1  GGATAGTGTTGTGACAACATATCATTTCTGTGAATTC  978
      |||||||||||||||||||||||||||||||||||||
seq2  GGATAGTGTTGTGACAACATATCATTTCTGTGAATTC  984