BAC Information

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BAC

Clone NameB6Ng01-144H06
Chromosome6 (Build37)4 (Build37)
Map Location 18,835,427 - 18,835,96874,437,946 - 74,439,017
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144H06.bB6Ng01-144H06.g
ACCDH942127DH942128
length9451,061
definitionDH942127|Mus musculus domesticus DNA, BAC clone: B6Ng01-144H06, 5' end.DH942128|Mus musculus domesticus DNA, BAC clone: B6Ng01-144H06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,427 - 18,835,968)(74,437,946 - 74,439,017)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgttgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccacgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctattctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagttttatcatac
agatctttcacctccttagttagagtcacgccagatattttatat
gaattccagttatttcctgggaattgagcatatacctccctattgaagta
gtattatttgttgtggttagtacaagtcctcaaaggccacagtgatttga
gaagcaagagaatagcagaagtcaattattctctagctggatagcattga
tgcagaacagaaaaagaggagaaatgtgggaatgctgagaagcaaaagaa
gtgtctcatatgggaatatggcttacgtcttttgccaaaaatgtgtggaa
cacctgacgataactataataatccattatctgataaaaaatttcacaag
tattataaatgacatttatggtcaaaattgtactcttgacctccttgtga
cttatatataataagaattctgttgtcttcttttgacttatgttttatca
gcctataaatctggacaaagcacctcataaaccacctaataaattcactt
cctaaacaagagttctttagataaaaataagtgtatggaaatcaatgatc
ctgcaagccaagttaaaatataaacaaggggatagtagaaagcagtaata
tgaaaaacagaggttgtgaataccgggagttctatgaaggtgagaactga
ggtggaggtggaggagttgagaagtcaggagatagcacaaccattttgct
gaaaataccatatattaagtttacaaacctaacaggacttgaactaacca
aaaaactcttatccaacctagtttatctagtgctagaaggttctacacag
gcttcttgggctcttatatatcaccagacactgaatgctacaatattgac
cttacaggcaatatgtgtccactggtaaaatatggcataatggtccttgt
agtactaactgctttctgacatgatttgagaccttttttcacagacggaa
ctcatccctggtaatgcagtgtaaacgtgctcaaaagctcatgactggtg
aagttatagccgcagaggatacttactatgtatttgtctaatgatctgct
ggctctttaaaattagtcatactcaagatctctgctgttctcatctggac
gagaaggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835427_18835968
seq2: B6Ng01-144H06.b_46_588 (reverse)

seq1  AATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGAT  50
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  AATAGAATTGAAGATCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGTGAATC  150
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGCGAATC  150

seq1  GATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCA  300
      ||||||||||||||||||||| ||||||||| ||||||||||||||| ||
seq2  AAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAACA  300

seq1  ATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATGAAACT  349
      ||||| |||||||| || | |||||| |||||||||||||||||||||||
seq2  ATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  350

seq1  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  450

seq1  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  542
      |||||||||||| ||||||||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  543

seq1: chr4_74437946_74439017
seq2: B6Ng01-144H06.g_66_1126 (reverse)

seq1  CACTCCTTCTCTGTCCAAGATGAAGAACAGCAGAGATCTATGAGTATGAA  50
      ||||||||||| |||| ||||| |||||||||||||||| ||||||||  
seq2  CACTCCTTCTC-GTCC-AGATG-AGAACAGCAGAGATCT-TGAGTATG--  44

seq1  CATAAATTTTAAAGAGCCAGCATGACCATTAAGACAAATAACAATAGTAG  100
       |  |||||||||||||||||| || |||| |||||||||   |||||| 
seq2  -ACTAATTTTAAAGAGCCAGCA-GATCATT-AGACAAATA--CATAGTAA  89

seq1  GTTTCCTCTGCGGCTATAACTTCACCAGTCATGAGCTTTTGAGCACGTTT  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTCTGCGGCTATAACTTCACCAGTCATGAGCTTTTGAGCACGTTT  139

seq1  ACACTGCATTACCAGGGATGAGTTCCGTCTGTG-AAAAAGGTCTCAAATC  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACACTGCATTACCAGGGATGAGTTCCGTCTGTGAAAAAAGGTCTCAAATC  189

seq1  ATGTCAGAAAGCAGTTAGTTACTACAAGGACCATTATGCCATATTTTACC  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGTCAGAAAGCAGTTAG-TACTACAAGGACCATTATGCCATATTTTACC  238

seq1  AGTGGACACATATTGCCTGTAAGGTCAATATTGTAGCATTCAGTGTCTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACACATATTGCCTGTAAGGTCAATATTGTAGCATTCAGTGTCTGG  288

seq1  TGATATATAAGAGCCCAAGAAGCCTGTGTAGAACCTTCTAGCACTAGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATAAGAGCCCAAGAAGCCTGTGTAGAACCTTCTAGCACTAGATA  338

seq1  AACTAGGTTGGATAAGAGTTTTTTGGTTAGTTCAAGTCCTGTTAGGTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTTGGATAAGAGTTTTTTGGTTAGTTCAAGTCCTGTTAGGTTTG  388

seq1  TAAACTTAATATATGGTATTTTCAGCAAAATGGTTGTGCTATCTCCTGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTAATATATGGTATTTTCAGCAAAATGGTTGTGCTATCTCCTGAC  438

seq1  TTCTCAACTCCTCCACCTCCACCTCAGTTCTCACCTTCATAGAACTCCCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACTCCTCCACCTCCACCTCAGTTCTCACCTTCATAGAACTCCCG  488

seq1  GTATTCACAACCTCTGTTTTTCATATTACTGCTTTCTACTATCCCCTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCACAACCTCTGTTTTTCATATTACTGCTTTCTACTATCCCCTTGT  538

seq1  TTATATTTTAACTTGGCTTGCAGGATCATTGATTTCCATACACTTATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTAACTTGGCTTGCAGGATCATTGATTTCCATACACTTATTTT  588

seq1  TATCTAAAGAACTCTTGTTTAGGAAGTGAATTTATTAGGTGGTTTATGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAGAACTCTTGTTTAGGAAGTGAATTTATTAGGTGGTTTATGAG  638

seq1  GTGCTTTGTCCAGATTTATAGGCTGATAAAACATAAGTCAAAAGAAGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGTCCAGATTTATAGGCTGATAAAACATAAGTCAAAAGAAGACA  688

seq1  ACAGAATTCTTATTATATATAAGTCACAAGGAGGTCAAGAGTACAATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTCTTATTATATATAAGTCACAAGGAGGTCAAGAGTACAATTTT  738

seq1  GACCATAAATGTCATTTATAATACTTGTGAAATTTTTTATCAGATAATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAAATGTCATTTATAATACTTGTGAAATTTTTTATCAGATAATGG  788

seq1  ATTATTATAGTTATCGTCAGGTGTTCCACACATTTTTGGCAAAAGACGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATAGTTATCGTCAGGTGTTCCACACATTTTTGGCAAAAGACGTA  838

seq1  AGCCATATTCCCATATGAGACACTTCTTTTGCTTCTCAGCATTCCCACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATATTCCCATATGAGACACTTCTTTTGCTTCTCAGCATTCCCACAT  888

seq1  TTCTCCTCTTTTTCTGTTCTGCATCAATGCTATCCAGCTAGAGAATAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTTTTTCTGTTCTGCATCAATGCTATCCAGCTAGAGAATAATT  938

seq1  GACTTCTGCTATTCTCTTGCTTCTCAAATCACTGTGGCCTTTGAGGACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGCTATTCTCTTGCTTCTCAAATCACTGTGGCCTTTGAGGACTT  988

seq1  GTACTAACCACAACAAATAATACTACTTCAATAGGGAGGTATATGCTCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAACCACAACAAATAATACTACTTCAATAGGGAGGTATATGCTCAA  1038

seq1  TTCCCAGGAAATAACTGGAATTC  1072
      |||||||||||||||||||||||
seq2  TTCCCAGGAAATAACTGGAATTC  1061