BAC Information

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BAC

Clone NameB6Ng01-144H16
Chromosome6 (Build37)
Map Location 13,484,619 - 13,615,688
singlet/doubletdoublet
Overlap geneTmem168, B630005N14Rik
Upstream geneThsd7a, LOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478
Downstream geneGpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144H16.bB6Ng01-144H16.g
ACCDH942147DH942148
length2281,120
definitionDH942147|Mus musculus domesticus DNA, BAC clone: B6Ng01-144H16, 5' end.DH942148|Mus musculus domesticus DNA, BAC clone: B6Ng01-144H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,615,465 - 13,615,688)(13,484,619 - 13,485,776)
sequence
aacgttttcacactccccgagtaatgggaaacaggatggttagtgctcaa
gcttcctgccctttacaatgccctttagaactagtagcatagtggatggg
gtatcctcaccagcaatgttcctagaactcccctgtactgtggttagctt
tttctccttctttgtagttttaatcctctcctctcctctcctctcctctc
cactcctctccactccactctctcctct
gaattccttggattacttataaaacttcctatcaggggctagataattgt
ataggtgactaagagcacttgttgctcttgcggaaggcatgattgattct
aaacacccacatgatggctcacaacagtctataattgcagtctcggggaa
tccagtgtcctcttctgaactctgagctgtcaggcatgcatgtgctacat
acacatacatacacaaaggcaaaatactcatacacaaaaagtaatgagta
aatctcaacagtaaaattcaatatccaggctcaagaagatgatgaaatgg
gaggcaagagaagaattgaggactcataatccttcttacaaataaggaaa
cctctgtctgcacaactgtttcctcaactatgttattttagagtgtacct
agcaacaaacaagtttgacagaaggacaaggagccaagacctcagcctga
ctaaagagaagaattaagaaaagggattggaggacaagagcaggagccca
agcctattactctagcaatcaagaaactgaggtaagagcataacaagttc
aggggcagcctgggctacataggagatatcctaaacaaggagagataaac
agtgtggagatacagtccagtggccagtgccatcgatagtccaggaagca
ttaagaagaaccaagagaagcagagggtaagagtgaaggttcaagtctgg
gaaccttgcaagagtattaaaggaaacagagagccagctatgatcattta
gaaagttaagagtgaatgataatggatcaggtaagttatttccagactgg
gagtgttgaaattcaaagtcatttgtgatctcacctcttataaatatccc
ctgtcaactcaactgcaatggattccagagcctgttgtcacacaggcaat
ctggaagaactgcctggggattgtggtaacagaaggaaaattttcttatg
agcatctttgatgtctggaaaagcatgtgtgcttaaacatcttttgagag
ggggctatctggtatctcagactgattataccagaaatctgctatagcaa
ataacatattcaaatgtatatcacatagctgtgaactagctggcatgtcc
tgatgcaattaacgaactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_13615465_13615688
seq2: B6Ng01-144H16.b_50_277 (reverse)

seq1  AGAGGAGA----GGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGA  46
      ||||||||    |||| ||||||||| |||||||||||||||||||||||
seq2  AGAGGAGAGAGTGGAGTGGAGAGGAGTGGAGAGGAGAGGAGAGGAGAGGA  50

seq1  GAGGATTAAAACTACAAAGAAGGAGAAAAAGCTAACCACAGTACAGGGGA  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTAAAACTACAAAGAAGGAGAAAAAGCTAACCACAGTACAGGGGA  100

seq1  GTTCTAGGAACATTGCTGGTGAGGATACCCCATCCACTATGCTACTAGTT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGAACATTGCTGGTGAGGATACCCCATCCACTATGCTACTAGTT  150

seq1  CTAAAGGGCATTGTAAAGGGCAGGAAGCTTGAGCACTAACCATCCTGTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGCATTGTAAAGGGCAGGAAGCTTGAGCACTAACCATCCTGTTT  200

seq1  CCCATTACTCGGGGAGTGTGAAAACGTT  224
      ||||||||||||||||||||||||||||
seq2  CCCATTACTCGGGGAGTGTGAAAACGTT  228

seq1: chr6_13484619_13485776
seq2: B6Ng01-144H16.g_67_1186

seq1  GAATTCCTTGGATTACTTATAAAACTTCCTATCAGGGGCTAGATAATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGATTACTTATAAAACTTCCTATCAGGGGCTAGATAATTGT  50

seq1  ATAGGTGACTAAGAGCACTTGTTGCTCTTGCGGAAGGCATGATTGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGACTAAGAGCACTTGTTGCTCTTGCGGAAGGCATGATTGATTCT  100

seq1  AAACACCCACATGATGGCTCACAACAGTCTATAATTGCAGTCTCGGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCACATGATGGCTCACAACAGTCTATAATTGCAGTCTCGGGGAA  150

seq1  TCCAGTGTCCTCTTCTGAACTCTGAGCTGTCAGGCATGCATGTGCTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTCCTCTTCTGAACTCTGAGCTGTCAGGCATGCATGTGCTACAT  200

seq1  ACACATACATACACAAAGGCAAAATACTCATACACAAAAAGTAATGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACATACACAAAGGCAAAATACTCATACACAAAAAGTAATGAGTA  250

seq1  AATCTCAACAGTAAAATTCAATATCCAGGCTCAAGAAGATGATGAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAACAGTAAAATTCAATATCCAGGCTCAAGAAGATGATGAAATGG  300

seq1  GAGGCAAGAGAAGAATTGAGGACTCATAATCCTTCTTACAAATAAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGAGAAGAATTGAGGACTCATAATCCTTCTTACAAATAAGGAAA  350

seq1  CCTCTGTCTGCACAACTGTTTCCTCAACTATGTTATTTTAGAGTGTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTGCACAACTGTTTCCTCAACTATGTTATTTTAGAGTGTACCT  400

seq1  AGCAACAAACAAGTTTGACAGAAGGACAAGGAGCCAAGACCTCAGCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAAACAAGTTTGACAGAAGGACAAGGAGCCAAGACCTCAGCCTGA  450

seq1  CTAAAGAGAAGAATTAAGAAAAGGGATTGGAGGACAAGAGCAGGAGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGAAGAATTAAGAAAAGGGATTGGAGGACAAGAGCAGGAGCCCA  500

seq1  AGCCTATTACTCTAGCAATCAAGAAACTGAGGTAAGAGCATAACAAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATTACTCTAGCAATCAAGAAACTGAGGTAAGAGCATAACAAGTTC  550

seq1  AGGGGCAGCCTGGGCTACATAGGAGATATCCTAAACAAGGAGAGATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGCCTGGGCTACATAGGAGATATCCTAAACAAGGAGAGATAAAC  600

seq1  AGTGTGGAGATACAGTCCAGTGGCCAGTGCCATCGATAGTCCAGGAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAGATACAGTCCAGTGGCCAGTGCCATCGATAGTCCAGGAAGCA  650

seq1  TTAAGAAGAACCAAGAGAAGCAGAGGGTAAGAGTGAAGGTTCAAGTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGAACCAAGAGAAGCAGAGGGTAAGAGTGAAGGTTCAAGTCTGG  700

seq1  GAACCTTGCAAGAGTATTAAAGGAAACAGAGAGCCAGCTATGATCATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTGCAAGAGTATTAAAGGAAACAGAGAGCCAGCTATGATCATTTA  750

seq1  GAAAGTTAAGAGTGAATGATAATGGATCAGGTAAGTTATTTCCAGACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTAAGAGTGAATGATAATGGATCAGGTAAGTTATTTCCAGACTGG  800

seq1  GAGTGTTGAAATTCAAAGTCATTTGTGATCTCACCTCTTATAAATATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGAAATTCAAAGTCATTTGTGATCTCACCTCTTATAAATATCCC  850

seq1  CTGTCAACTCAAACTGCAATGGATTCCAGAGCCTGTTGTCACACAGGCAA  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAACTC-AACTGCAATGGATTCCAGAGCCTGTTGTCACACAGGCAA  899

seq1  TCTGGAAGAACTGCCTGGGGATTGTGGTAACAGAAGGAAAATTTTTCTTA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTGGAAGAACTGCCTGGGGATTGTGGTAACAGAAGGAAAA-TTTTCTTA  948

seq1  TGAGCATCTTTGATGTTCCTGGAAAAGCAATTGTGTGCTTAAAACATTCT  1000
      ||||||||||||||||  |||||||||||  ||||||||| ||||| |||
seq2  TGAGCATCTTTGATGT--CTGGAAAAGCA--TGTGTGCTT-AAACA-TCT  992

seq1  TTTGAGAGGGGGCTATTCTGGTATCTCAGGAACTGATTTATACCCAGAAA  1050
      ||||||||||||||| |||||||||||||  ||||| ||||| |||||||
seq2  TTTGAGAGGGGGCTA-TCTGGTATCTCAG--ACTGA-TTATA-CCAGAAA  1037

seq1  TCTTGCTTAATAGCCAATATAACATATTTTTAAAAATGGTTATAATTCCA  1100
      || ||||  |||||  | ||||||||||     |||||  ||||  ||  
seq2  TC-TGCT--ATAGC--AAATAACATATT----CAAATG--TATA--TC--  1072

seq1  ACATAGCTGTGATACCTAGGCTGGCAGTTGTCTCTGATGCAGATTAAACA  1150
      |||||||||||  | ||| |||||||  |||| |||||||| ||||   |
seq2  ACATAGCTGTG--AACTA-GCTGGCA--TGTC-CTGATGCA-ATTA---A  1112

seq1  GAAACTGC  1158
        ||||||
seq2  CGAACTGC  1120