BAC Information

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BAC

Clone NameB6Ng01-144J14
Chromosome6 (Build37)
Map Location 144,938,419 - 145,054,594
singlet/doubletdoublet
Overlap geneBcat1
Upstream geneSox5, 4933425H06Rik, EG665149
Downstream geneLrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144J14.bB6Ng01-144J14.g
ACCDH942236DH942237
length1,0951,041
definitionDH942236|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J14, 5' end.DH942237|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,938,419 - 144,939,531)(145,053,518 - 145,054,594)
sequence
gaattcagttgagtcatgagatgagcttttatcatgaaggtggctgctta
cttgataatgtcctcctacctccccaccccccagttacatacacacacag
gcacagatcacacacacacataggcacacaaatgggcacagacacataca
cagacaccaaaacctttccatccaacatttaaataattttggatacatat
acattcttaaggcgtggtattcaagccagaaaaactaacaatttcagagg
cttttgtaactcagccctcaaaaccctttcccttccagaatcttgaacat
tcttgtatgacagcaccgtccctctttaggggggcagagcaatactaagg
gctttagaactcctgcttctcttaggtactgtctgccattagtaagctag
ctgagctaccttagctgattagcagtgttctgaacttgtgggcatggacc
aagaggagagactactccacatgtgttctttcctgagggaaaaaaatcct
cagcacaggtgacaatgtcatcagtcactggctcagcctgggttcctaag
acacggttggaagggggctcaatccatggcctgtatctttatcagtttag
acacacagtttaaggaattcagttagctcatgatttgagacagacaacag
cttttgggacagcccctgctccatttgttcaggactcacatgaagaccaa
gctacatctgctacatatgtgtggggagacctaggttccacccatgtatg
ttctttggttggtatttcagtctctgagagccctaaagggtggttctgtt
ggtcttcctgtggagttcctatcccctttgagtcctgcagtacttcttcc
ataagaacccccaatctccagccacagcaacattacttaagcagtccagg
tctaccagcctagagaatgctgccctcagtggactggcccacctacatct
gttagcattttctaatgccccatagacatgtccaaagccaatcttggatt
ccagtcagtctcatcagcatctcttcaggggtcagaccacagctgagcta
ctataaaacagccacagtcaaatgaaccatcagatgggactggca
gaattcacctgccaactttgggaaatagcccaggaattggtaggttttca
cagaccagcgtatatgactactgagacatctatgaaaaattcagtggggt
cttctggagtccaggctggctttgaactcacaatatcactgacagtgacc
ttgaccgaccagtctccagctcctaagtgctgggattgtaggcatgaatc
aacatctggctaagaattttaatcttggggagaaaaacaatttaaaatat
ttttttttacatttattatatacatacattatgcctgtgtgtgtgtgtgt
gtgtgtgtgtacgcaggtatatgtgcaagcatgaaaagtgctgggaattg
acccatgattctgcatggtaggcaagcccttgatgctcgaatttaagtca
tgtgacctctgtggtaggcttttgcggtctgatgacttacccgcagcttg
ttctagcccgtggccatggtcctctgcgcctctgaggcagccatggaaac
ccataggtcctctagctctttctgtaatggacggcctctccttgcctgcc
gggcactgcaagggtgaggacagggactgtagccagtgaaccccaagtta
acatcaggggagtgagccaggcatggtggcgcacgcctttaatcccagca
ctcaggaggcagaggcaggcggatttctgacttcgaggccagcctggtct
acaaagtgagctccaggacagccagggctacaaagagaaaccctgtctcg
aaaaaacaaacaaacaaacaaaacaaaaaaaaacaaaaaaaaaaatatgg
ggagtgaaggaagccatgagcatttctggaccaaggtgaaaccacaaaag
cctacccaggtgcccaagtagtaaaaataccacatccacccgactcaggt
gctagaagcagaggggttggtgagaacacgtggtaggagaacagaaaata
aatagagacagtctactcgactctaggtagagcaagaagcagctctttta
agaacaaaaatgagctttggctgtattaaggaaggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_144938419_144939531
seq2: B6Ng01-144J14.b_43_1137

seq1  GAATTCAGTTGAGTCATGAGATGAGCTTTTATCATGAAGGTGGCTGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGAGTCATGAGATGAGCTTTTATCATGAAGGTGGCTGCTTA  50

seq1  CTTGATAATGTCCTCCTACCTCCCCACCCCCCAGTTACATACACACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAATGTCCTCCTACCTCCCCACCCCCCAGTTACATACACACACAG  100

seq1  GCACAGATCACACACACACATAGGCACACAAATGGGCACAGACACATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGATCACACACACACATAGGCACACAAATGGGCACAGACACATACA  150

seq1  CAGACACCAAAACCTTTCCATCCAACATTTAAATAATTTTGGATACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCAAAACCTTTCCATCCAACATTTAAATAATTTTGGATACATAT  200

seq1  ACATTCTTAAGGCGTGGTATTCAAGCCAGAAAAACTAACAATTTCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTAAGGCGTGGTATTCAAGCCAGAAAAACTAACAATTTCAGAGG  250

seq1  CTTTTGTAACTCAGCCCTCAAAACCCTTTCCCTTCCAGAATCTTGAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAACTCAGCCCTCAAAACCCTTTCCCTTCCAGAATCTTGAACAT  300

seq1  TCTTGTATGACAGCACCGTCCCTCTTTAGGGGGGCAGAGCAATACTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATGACAGCACCGTCCCTCTTTAGGGGGGCAGAGCAATACTAAGG  350

seq1  GCTTTAGAACTCCTGCTTCTCTTAGGTACTGTCTGCCATTAGTAAGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGAACTCCTGCTTCTCTTAGGTACTGTCTGCCATTAGTAAGCTAG  400

seq1  CTGAGCTACCTTAGCTGATTAGCAGTGTTCTGAACTTGTGGGCATGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTACCTTAGCTGATTAGCAGTGTTCTGAACTTGTGGGCATGGACC  450

seq1  AAGAGGAGAGACTACTCCACATGTGTTCTTTCCTGAGGGAAAAAAATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGAGACTACTCCACATGTGTTCTTTCCTGAGGGAAAAAAATCCT  500

seq1  CAGCACAGGTGACAATGTCATCAGTCACTGGCTCAGCCTGGGTTCCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGGTGACAATGTCATCAGTCACTGGCTCAGCCTGGGTTCCTAAG  550

seq1  ACACGGTTGGAAGGGGGCTCAATCCATGGCCTGTATCTTTATCAGTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGTTGGAAGGGGGCTCAATCCATGGCCTGTATCTTTATCAGTTTAG  600

seq1  ACACACAGTTTAAGGAATTCAGTTAGCTCATGATTTGAGACAGACAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGTTTAAGGAATTCAGTTAGCTCATGATTTGAGACAGACAACAG  650

seq1  CTTTTGGGACAGCCCCTGCTCCATTTGTTCAGGACTCACATGAAGACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGACAGCCCCTGCTCCATTTGTTCAGGACTCACATGAAGACCAA  700

seq1  GCTACATCTGCTACATATGTGTGGGGAGACCTAGGTTCCACCCATGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCTGCTACATATGTGTGGGGAGACCTAGGTTCCACCCATGTATG  750

seq1  TTCTTTGGTTGGTATTTCAGTCTCTGAGAGCCCT-AAGGGTGGTTCTGTT  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTTTGGTTGGTATTTCAGTCTCTGAGAGCCCTAAAGGGTGGTTCTGTT  800

seq1  GGTCTTCCTGTGGAGTTCCTATCCCCTTTGAGTCCTGCAGTACTTCTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCCTGTGGAGTTCCTATCCCCTTTGAGTCCTGCAGTACTTCTTCC  850

seq1  ATAAGAACCCCCAATCTCCAGCCACAGCAACATTACTTAAGCAGTCCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACCCCCAATCTCCAGCCACAGCAACATTACTTAAGCAGTCCAGG  900

seq1  TCTACCAGCCTAGAGAAATGCTGCCCTCAGTGGACTGGGCCCACCTACAT  949
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  TCTACCAGCCTAGAG-AATGCTGCCCTCAGTGGACT-GGCCCACCTACAT  948

seq1  CTGTTAGCATTTTCTAATGCCCCATAGACATGTCCAAAAGCCAATCTTGG  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTGTTAGCATTTTCTAATGCCCCATAGACATGTCC-AAAGCCAATCTTGG  997

seq1  ATTCCAGTCAGT-TCTTCAATCAAGGCATCCTCTTCCAAGGGGTCAAGAC  1048
      |||||||||||| || |||      |||| ||||||  ||||||| ||||
seq2  ATTCCAGTCAGTCTCATCA------GCAT-CTCTTC--AGGGGTC-AGAC  1037

seq1  CACAGCTGAAGCTAACTATAAAACAAGCCACAGTCAAAATGAACCATCAG  1098
      |||||||| |||| |||||||||| |||||||||| ||||||||||||||
seq2  CACAGCTG-AGCT-ACTATAAAAC-AGCCACAGTC-AAATGAACCATCAG  1083

seq1  ATGGGGAACCTGGCA  1113
      |||||    ||||||
seq2  ATGGG---ACTGGCA  1095

seq1: chr6_145053518_145054594
seq2: B6Ng01-144J14.g_67_1107 (reverse)

seq1  CCCACCCCCTCCTAAATACAGCCCCAAAGCTTCATTCTCTGTCTCTTAAA  50
      |||||||| |||| |||||||  ||||||| ||||| | ||| |||||||
seq2  CCCACCCCTTCCTTAATACAG--CCAAAGC-TCATT-TTTGT-TCTTAAA  45

seq1  AGAGCCTGCTCCCTGCTCTCTACCCTAGAGTCTGAGGTAGGACTTTGTCT  100
      |||| ||||| | ||||||    ||||||||| || ||| |||  |||||
seq2  AGAG-CTGCTTCTTGCTCT---ACCTAGAGTC-GA-GTA-GAC--TGTCT  86

seq1  CTATTTTATTTTTTCCTGTTTCCCTCCTACCACGTGTTCTCACCAACCCC  150
      ||| ||||||||   |||||   ||||||||||||||||||||||| |||
seq2  CTA-TTTATTTT---CTGTT---CTCCTACCACGTGTTCTCACCAA-CCC  128

seq1  CTCTGCTTCCTAGCACCCTGAGTCGGGTGGATTGTGGTATTTTTACTACT  200
      |||||||| |||||| ||||||||||||||| ||||||||||||||||||
seq2  CTCTGCTT-CTAGCA-CCTGAGTCGGGTGGA-TGTGGTATTTTTACTACT  175

seq1  TGGGCACCTGGGTTAGGCTTTTTGTGGTTTTCACCTTGGGTCCAGAAATG  250
      |||||||||||| ||||| |||||||| ||||||||| ||||||||||||
seq2  TGGGCACCTGGG-TAGGC-TTTTGTGG-TTTCACCTT-GGTCCAGAAATG  221

seq1  CTCATGGCTTTCCTTCACTCCCCATATTTTTTTTTTTTTGTTTTTTTTTT  300
      |||||||| |||||||||||||||||  ||||||||||||||||||||| 
seq2  CTCATGGC-TTCCTTCACTCCCCATA--TTTTTTTTTTTGTTTTTTTTT-  267

seq1  TGTTTTTGTTTGTTTGTTTGTTTTTTTCGAGACAGGGTTTCTCTTTGTAG  350
         ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  --GTTTTGTTTGTTTGTTTG-TTTTTTCGAGACAGGGTTTCTCTTTGTAG  314

seq1  CCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAAGTCA  364

seq1  GAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCC  414

seq1  ACCATGCCTGGCTCACTCCCCTGATGTTAACTTGGGGTTCACTGGCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCTGGCTCACTCCCCTGATGTTAACTTGGGGTTCACTGGCTACA  464

seq1  GTCCCTGTCCTCACCCTTGCAGTGCCCGGCAGGCAAGGAGAGGCCGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTCCTCACCCTTGCAGTGCCCGGCAGGCAAGGAGAGGCCGTCCA  514

seq1  TTACAGAAAGAGCTAGAGGACCTATGGGTTTCCATGGCTGCCTCAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAAGAGCTAGAGGACCTATGGGTTTCCATGGCTGCCTCAGAGGC  564

seq1  GCAGAGGACCATGGCCACGGGCTAGAACAAGCTGCGGGTAAGTCATCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGACCATGGCCACGGGCTAGAACAAGCTGCGGGTAAGTCATCAGA  614

seq1  CCGCAAAAGCCTACCACAGAGGTCACATGACTTAAATTCGAGCATCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAAAGCCTACCACAGAGGTCACATGACTTAAATTCGAGCATCAAGG  664

seq1  GCTTGCCTACCATGCAGAATCATGGGTCAATTCCCAGCACTTTTCATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTACCATGCAGAATCATGGGTCAATTCCCAGCACTTTTCATGCT  714

seq1  TGCACATATACCTGCGTACACACACACACACACACACACACAGGCATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATATACCTGCGTACACACACACACACACACACACACAGGCATAAT  764

seq1  GTATGTATATAATAAATGTAAAAAAAAATATTTTAAATTGTTTTTCTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATATAATAAATGTAAAAAAAAATATTTTAAATTGTTTTTCTCCC  814

seq1  CAAGATTAAAATTCTTAGCCAGATGTTGATTCATGCCTACAATCCCAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTAAAATTCTTAGCCAGATGTTGATTCATGCCTACAATCCCAGCA  864

seq1  CTTAGGAGCTGGAGACTGGTCGGTCAAGGTCACTGTCAGTGATATTGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGCTGGAGACTGGTCGGTCAAGGTCACTGTCAGTGATATTGTGA  914

seq1  GTTCAAAGCCAGCCTGGACTCCAGAAGACCCCACTGAATTTTTCATAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGCCAGCCTGGACTCCAGAAGACCCCACTGAATTTTTCATAGAT  964

seq1  GTCTCAGTAGTCATATACGCTGGTCTGTGAAAACCTACCAATTCCTGGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTAGTCATATACGCTGGTCTGTGAAAACCTACCAATTCCTGGGC  1014

seq1  TATTTCCCAAAGTTGGCAGGTGAATTC  1077
      |||||||||||||||||||||||||||
seq2  TATTTCCCAAAGTTGGCAGGTGAATTC  1041