BAC Information

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BAC

Clone NameB6Ng01-144N24
Chromosome6 (Build37)
Map Location 76,319,474 - 76,367,089
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668143, EG668145, EG546907, LOC100042952
Downstream geneLOC668153, EG668155, LOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144N24.bB6Ng01-144N24.g
ACCDH942435DH942436
length1,157279
definitionDH942435|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N24, 5' end.DH942436|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,319,474 - 76,320,621)(76,366,811 - 76,367,089)
sequence
gaattcaaggcagacatctggaggaagaaagtgaagcagaagtgattaga
gaactctgcttccttgcttgctccacaaagcttgctcagcctactttcat
aagtaatttaggatcacctgaacattgtggccccagccacagtgggctgc
ccctcccccaattaatcattacacaataaaacaccttacagagatgttta
caaacaatctaatcaaggcattttctcaattgaagtttctgttatcaaat
aagttaacattatgtcaaaaaccaaccagaacactatacaaaaatgttct
tcacagcactgacttagtatcgtcttaagaaaactccatatgttgtattg
aattgtggttcagagaagatggtggaatcacaggaagtctttaaaaaaac
aacaaaataaaaaggctatggccacaaggtaacatgaactataaatgttt
tcagaaaaatctatagtgtgtgtgcatataggcatacaatgacatgcaga
taaagtacagatatacatgaacatacacatatataacgtatattgaagtg
gttcgggctcttctcgccctctttagttttaggcaggcaaatgagataat
tttgagaggttgctatgttttaattaccagttaagtaaatcaattaaaca
aaatctgctaaaagaaatataagatgtgatttcaaacatttattaggact
gttatctgagtatggtggcataaaattttaatcctagtacttgggggtca
gaggtaggtggaaggtggattcttataagttcaaatccaatctgatctat
ctatctatctatctatctatctatctatctatctatctatctatctatct
aagtcagggacattgtaacctttttgaaataatttgtgaaaagttcagaa
ttgacattagttccattatggtggttcccaagttaatgccatatactggg
atcactaagaaattttaaaagatattggtgtttttttttttttttgtttt
attattcccagacatctggtccatgaatggcaggattttgaagagcagta
ttctcagaggctgctggatacacaatccttatttaggttcgaagtcttaa
actccttttcctcagtagacattttcagtctgattagttggaatgtcttc
caggctt
ccattcacagctgcctattgttgggttatttgggctataaactgtaagtc
attactataaattcccttaatatagagagtcattttataagttctgtgac
tctagagaaccctggctaatacacaatctaattcatacttaatgcaccaa
ataaccaggtgtagagttcttagggccagttcattcttcctttgaatcaa
gatgatttcaagtgttgatatagtctactggcagcacagtttttttgttt
gtttgtttggttggttggttggttggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_76319474_76320621
seq2: B6Ng01-144N24.b_49_1205

seq1  GAATTCAAGGCAGACATCTGGAGGAAGAAAGTGAAGCAGAAGTGATTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCAGACATCTGGAGGAAGAAAGTGAAGCAGAAGTGATTAGA  50

seq1  GAACTCTGCTTCCTTGCTTGCTCCACAAAGCTTGCTCAGCCTACTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGCTTCCTTGCTTGCTCCACAAAGCTTGCTCAGCCTACTTTCAT  100

seq1  AAGTAATTTAGGATCACCTGAACATTGTGGCCCCAGCCACAGTGGGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTTAGGATCACCTGAACATTGTGGCCCCAGCCACAGTGGGCTGC  150

seq1  CCCTCCCCCAATTAATCATTACACAATAAAACACCTTACAGAGATGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCAATTAATCATTACACAATAAAACACCTTACAGAGATGTTTA  200

seq1  CAAACAATCTAATCAAGGCATTTTCTCAATTGAAGTTTCTGTTATCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATCTAATCAAGGCATTTTCTCAATTGAAGTTTCTGTTATCAAAT  250

seq1  AAGTTAACATTATGTCAAAAACCAACCAGAACACTATACAAAAATGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACATTATGTCAAAAACCAACCAGAACACTATACAAAAATGTTCT  300

seq1  TCACAGCACTGACTTAGTATCGTCTTAAGAAAACTCCATATGTTGTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCACTGACTTAGTATCGTCTTAAGAAAACTCCATATGTTGTATTG  350

seq1  AATTGTGGTTCAGAGAAGATGGTGGAATCACAGGAAGTCTTTAAAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGTTCAGAGAAGATGGTGGAATCACAGGAAGTCTTTAAAAAAAC  400

seq1  AACAAAATAAAAAGGCTATGGCCACAAGGTAACATGAACTATAAATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATAAAAAGGCTATGGCCACAAGGTAACATGAACTATAAATGTTT  450

seq1  TCAGAAAAATCTATAGTGTGTGTGCATATAGGCATACAATGACATGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAATCTATAGTGTGTGTGCATATAGGCATACAATGACATGCAGA  500

seq1  TAAAGTACAGATATACATGAACATACACATATATAACGTATATTGAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACAGATATACATGAACATACACATATATAACGTATATTGAAGTG  550

seq1  GTTCGGGCTCTTCTCGCCCTCTTTAGTTTTAGGCAGGCAAATGAGATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGGCTCTTCTCGCCCTCTTTAGTTTTAGGCAGGCAAATGAGATAAT  600

seq1  TTTGAGAGGTTGCTATGTTTTAATTACCAGTTAAGTAAATCAATTAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGGTTGCTATGTTTTAATTACCAGTTAAGTAAATCAATTAAACA  650

seq1  AAATCTGCTAAAAGAAATATAAGATGTGATTTCAAACATTTATTAGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCTAAAAGAAATATAAGATGTGATTTCAAACATTTATTAGGACT  700

seq1  GTTATCTGAGTATGGTGGCATAAAATTTTAATCCTAGTACTTGGGGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTGAGTATGGTGGCATAAAATTTTAATCCTAGTACTTGGGGGTCA  750

seq1  GAGGTAGGTGGAAGGTGGATTCTTATAAGTTCAAATCCAATCTGATCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGTGGAAGGTGGATTCTTATAAGTTCAAATCCAATCTGATCTAT  800

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  850

seq1  AAGTCAGGGACATTGTAACC-TCTTGAAATAATTTGTGAAAAGTTCAGAA  899
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  AAGTCAGGGACATTGTAACCTTTTTGAAATAATTTGTGAAAAGTTCAGAA  900

seq1  -TGACA-TAG-TCCATTATGGTGGTTCCCAAG-TAATGCCATATACTGGG  945
       ||||| ||| ||||||||||||||||||||| |||||||||||||||||
seq2  TTGACATTAGTTCCATTATGGTGGTTCCCAAGTTAATGCCATATACTGGG  950

seq1  ATCACTAAGAAATTTTAAAAGATATTGGTG--TTTTTTTTTTTTTGTTTT  993
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  ATCACTAAGAAATTTTAAAAGATATTGGTGTTTTTTTTTTTTTTTGTTTT  1000

seq1  ATTATTCCCAGACATCTGG-CCATG-ATTGCAAGATCTGGAAGAGCAGTA  1041
      ||||||||||||||||||| ||||| || ||| ||| | |||||||||||
seq2  ATTATTCCCAGACATCTGGTCCATGAATGGCAGGATTTTGAAGAGCAGTA  1050

seq1  -TCTCAGAAGCTGCT-GATACACAAATCCCTA-TTAGGTCCGAAGGTCTT  1088
       ||||||| |||||| ||||||| ||||| || |||||| |||| |||||
seq2  TTCTCAGAGGCTGCTGGATACAC-AATCCTTATTTAGGTTCGAA-GTCTT  1098

seq1  AAAACTCCTTCTC--CAGTAGACATTTTCAAGTCTGAGATAGTTGGTATG  1136
       ||||||||| ||  |||||||||||||| |||||||  ||||||| |||
seq2  -AAACTCCTTTTCCTCAGTAGACATTTTC-AGTCTGA-TTAGTTGGAATG  1145

seq1  TCTTCCAGGCTT  1148
      ||||||||||||
seq2  TCTTCCAGGCTT  1157

seq1: chr6_76366811_76367089
seq2: B6Ng01-144N24.g_74_352 (reverse)

seq1  CAACCAACCAACCAACCAACCAAACAAACAAACAAAAAAACTGTGCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCAACCAACCAACCAAACAAACAAACAAAAAAACTGTGCTGCC  50

seq1  AGTAGACTATATCAACACTTGAAATCATCTTGATTCAAAGGAAGAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACTATATCAACACTTGAAATCATCTTGATTCAAAGGAAGAATGAA  100

seq1  CTGGCCCTAAGAACTCTACACCTGGTTATTTGGTGCATTAAGTATGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTAAGAACTCTACACCTGGTTATTTGGTGCATTAAGTATGAATT  150

seq1  AGATTGTGTATTAGCCAGGGTTCTCTAGAGTCACAGAACTTATAAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTGTATTAGCCAGGGTTCTCTAGAGTCACAGAACTTATAAAATGA  200

seq1  CTCTCTATATTAAGGGAATTTATAGTAATGACTTACAGTTTATAGCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATATTAAGGGAATTTATAGTAATGACTTACAGTTTATAGCCCAA  250

seq1  ATAACCCAACAATAGGCAGCTGTGAATGG  279
      |||||||||||||||||||||||||||||
seq2  ATAACCCAACAATAGGCAGCTGTGAATGG  279