BAC Information

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BAC

Clone NameB6Ng01-145H12
Chromosome6 (Build37)
Map Location 79,595,816 - 79,596,880
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384440, LOC621815
Downstream geneLOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145H12.bB6Ng01-145H12.g
ACCDH942863DH942864
length1,0911,180
definitionDH942863|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H12, 5' end.DH942864|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcacctgaggaaaagcgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcagttcctca
aaaattggacatagtactaccagaggatcccgcaatacctctcctgggca
tatatccagaagatgtcccaactggtaagaacacatgctccactatgttc
atagcagccttatttataatagccagaagctggaaagaacccagatgccc
ctcaacagaggaatggatacagaaaatgtggtacatttacacaatggaat
actactcagctatttaaaaaaatgaatttatgaaattcctaggcaaatgg
atggacctggagggtatcatcctgagtgaagttaacctgattttaatcag
acgattttatcttaaccgtggactgaaacccataaaaagtggtttaggac
ttgagttttagcagaattcttgacctacaaatcctaataaccaccatggt
cagccacatcccagtggccatggcaccatggtcagccacatcccagtggc
catggcaccatggtcagccacatcccagtggccatggcacttctagtgtt
tcccaggcttcctgtgtcatcttatttctttttatgtgattactagtgag
gcgaatgttctcgttcagtaaatgataggaatagaactaatttcttgtaa
taatgactgactcctgtatacccagagaaaatgtccctttctgtcagcaa
tatctgctctgtaggagccggagcacactttcgagaaaaatattatttag
tggaattgctgtgatgggtcaaatgtgagactgtagaatgactgggccat
ataccacaacatgtgagatgtatctcaaagtagtgttagcatgtttaagt
atcatgcacagtcgtgcaaacttttctctcacttatttttt
gaattctgtttagctctgtactccattttttaattgatttatttggtttg
attgagtcaaacttcttgagttctttatatgtcttgcatattagcccttt
acaggatgtagggttagtgaagaacttttcccaacctgtaggttagcatt
ttgtcctattgacagtgaccttaaggaggacataaataactaccttaaag
taatacaggaaaacatagataaacaatagaaccccttaaagagaaaacac
acaattcccttaaaaatataggacaacacaatcaaacagttgaagtaact
gaacaaaactatccaggatctaaaaaatggaaacagaaacattaatgaaa
acacaaagggagaaaaccctggaggtagaaagcctaggaaagagatcaga
agtcacagatgtaatcatcaccaacagaatacaagagagaaaagagagaa
tatcaggtgtaaaagataccatagaagacattggcaaaacagttgaagga
aatacaaagtgcaaaaagctcctaaaggaaaacatccaggaaattcagga
cacaaaaaagaccaagcctaagaataataagtatagaagagactgaagat
tcccaattcaatggggctagcaatcatcttcaacaaaatcatagaggaaa
acttccctaacctaaagaaagagatggccataatgtacaagaagcctaaa
gaatgccaaacaaattggactagagaagaaattcctcctgtcacataata
ttcaaataccaaatgcacagaacatagaaagaatattaaaagttgtaaga
taaatatataaaaggggaactatcagaatcacacagatttctcaacagag
actctaaaggccagaagatcttgggctaatatcatacagactttaagaga
acagagtcctagcctagcctactataccctaaaaatctctcatttacatt
agatggagaaaccatatattcatgacagacaaatttaacaatatcttcca
ctaaacagccctacagagtttaatagaagaaaatcacacatggagggaac
tacacactcaaaatgaagaattaatctcctgcagcaaactcgaagaagac
atccacaacatctcccctctacacaaagataacggaagaaattatagctt
atggttccctactcaaggaactcatattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79595816_79596880
seq2: B6Ng01-145H12.b_85_1140

seq1  GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA  50

seq1  AAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAA  100

seq1  AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT  150

seq1  CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAG  200

seq1  TCTGGCAGTTCCTCAAAAATTGGACATAGTACTACCAGAGGATCCCGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAGTTCCTCAAAAATTGGACATAGTACTACCAGAGGATCCCGCAA  250

seq1  TACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAACACA  300

seq1  TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA  350

seq1  AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA  400

seq1  TTTACACAATGGAATACTACTCAGCTATTTAAAAAAATGAATTTATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAATGGAATACTACTCAGCTATTTAAAAAAATGAATTTATGAAA  450

seq1  TTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTTAA  500

seq1  CCTGATTTTAATCAGACGATTTTATCTTAACCGTGGACTGAAACCCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTTAATCAGACGATTTTATCTTAACCGTGGACTGAAACCCATAA  550

seq1  AAAGTGGTTTAGGACTTGAGTTTTAGCAGAATTCTTGACCTACAAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGTTTAGGACTTGAGTTTTAGCAGAATTCTTGACCTACAAATCCT  600

seq1  AATAACCACCATGGTCAGCCACATCCCAGTGGCCATGGCACCATGGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCACCATGGTCAGCCACATCCCAGTGGCCATGGCACCATGGTCAG  650

seq1  CCACATCCCAGTGGCCATGGCACCATGGTCAGCCACATCCCAGTGGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCCAGTGGCCATGGCACCATGGTCAGCCACATCCCAGTGGCCAT  700

seq1  GGCACTTCTAGTGTTTCCCAGGCTTCCTGTGTCATCTTATTTCTTTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTCTAGTGTTTCCCAGGCTTCCTGTGTCATCTTATTTCTTTTTAT  750

seq1  GTGATTACTAGTGAGGCGAAGGTTCTCGTTCAGTAAATGATAGGAATAGA  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGATTACTAGTGAGGCGAATGTTCTCGTTCAGTAAATGATAGGAATAGA  800

seq1  ACTAATTTCTTGTAATAATGACTGACTCCTGTATACCCAGAGAAAATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTCTTGTAATAATGACTGACTCCTGTATACCCAGAGAAAATGTC  850

seq1  CCTTTCTGTCAGCAATATCTGCTCTGTAGGAGGCGGAGCACACTTTCGAG  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTTTCTGTCAGCAATATCTGCTCTGTAGGAGCCGGAGCACACTTTCGAG  900

seq1  AAAAATTATTATTTAGTGGAATTGCTGTGATGGGTCAAATGTGAGACTGT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAA-TATTATTTAGTGGAATTGCTGTGATGGGTCAAATGTGAGACTGT  949

seq1  AGAAATGACTGGG-CATATACCACAAACATGTGAGATTGTATTCCTCAAA  999
      || |||||||||| |||||||||| ||||||||||| |||||  ||||||
seq2  AG-AATGACTGGGCCATATACCAC-AACATGTGAGA-TGTAT--CTCAAA  994

seq1  GTAGTGTTAGCATGTTTAAAGTATCATGGCACAGTCCGTGCAAAACTTTT  1049
      ||||||||||||||||| ||||||||| ||||||| ||||| ||||||||
seq2  GTAGTGTTAGCATGTTT-AAGTATCAT-GCACAGT-CGTGC-AAACTTTT  1040

seq1  CTCTCACTTATTTTTT  1065
      ||||||||||||||||
seq2  CTCTCACTTATTTTTT  1056