BAC Information

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BAC

Clone NameB6Ng01-145I13
Chromosome6 (Build37)
Map Location 48,559,210 - 48,688,031
singlet/doubletdoublet
Overlap geneZfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7
Upstream geneRn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1
Downstream geneLOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145I13.bB6Ng01-145I13.g
ACCDH942913DH942914
length1,113622
definitionDH942913|Mus musculus domesticus DNA, BAC clone: B6Ng01-145I13, 5' end.DH942914|Mus musculus domesticus DNA, BAC clone: B6Ng01-145I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,686,902 - 48,688,031)(48,559,210 - 48,559,831)
sequence
gaattctacagtttgcgtagaccttgagatggaaggtgacgagactgcat
ttcacagttctatcagccagttattggatgtaaacttccactggagaaaa
cacttaacctagaggcatcgctcttcagcagatgccaacctccgggcaag
ggtgatagtcagacagtgggtactgccagttggctgcactcctggtcagc
tggagggagaggctgtgctgctgctgcatgttggcatgctgatagaatct
ctcttgcttcattatctgagccatttgaagagatgtgtcaatatggtttt
acatatgtccccccaaagcaggcatgtccaactctagggagatggaggca
ggaggatcgtaagtttaaggctctgtttcaaaataactgaaagtgggcct
gaggatacaacatgtgggaagccctaggttcaatcctcactagagagggt
gggaatctcctcaagaaagcttcttcttagcctaccctctccactcttgc
ctttgcaacaccaaccttagaaggaacatctccccactgccctacttacc
accacacgtgtgaccatagaagtcaccagatacaggaccaaagtgaggaa
gaaggaacaggctccagctaacatgaacgagcagggcttactgcaaatat
ctggatgcacaataattcattttactcttgcagtttgaagaaattgtggg
aaatgcttcagaccacagacatattaagaaatcgttgacaactctttgtg
gtttcttgcatagcccttgtttgcaaagtgcttctgcttaatcaaagatt
ctgtgatgacagcaatgttcccagggctcccaaggctatgaacttttgca
ttgtggttggagtgatgggggagactaagctgtatatttaagttcatatg
attgaatattgcatccatgtggcctgtagctatcatacctgtagtcatgg
tatttatttctctctcttattttcagtactgaggatggagcctgttctag
cacatgggtgtactgtggcatcaggtatctctggcctctgtatgctctta
ttttagacatgtctcactaagtaatctagctagctgaatttgctcagtgc
tgaaggcatgcct
gaattctaggaaagatgtgtctgttagaaaaggaaacagggtagagggaa
ggtgacaggtggggaaggcccccgaggcagactctctctctggtctgggt
ctcctgggaaggtaaagggtctttggtacatataggagctcaacaggacg
aagactctgtgggatttctgggctgagaaaagccagtggctgggcttttg
acattggaagtcctgctttactgctgacaaaggagttgtgaggtaccatc
cacttttcaactgttcctgggcagggtcctgtactgtggaaggggtgagt
gaggagacctgacaggcccctgaggtgcttgcttgtccccggcacttggc
ctagcctcattcctatttctgcacttcgtgtgcttcagcctatgctgaca
ctaacatcccctgttatcgccccagccctaggccccaccacctgctgcag
gccacactcccctgcagtttctgcagttgtcagaacagcgggtggtttgt
ggacttcccatcaggggagttcatttccagattgcatcctgacccagtgt
gggtatctaggcttgagcaggccacaggagggtggaggtgactggggctt
tatcgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_48686902_48688031
seq2: B6Ng01-145I13.b_49_1161 (reverse)

seq1  AGGCATGCC-TCAGCTACAGAGCAAAATTCAAGGCTAGCTTAGATAACTT  49
      ||||||||| ||||| || |||| |||||||  |||||| ||||| ||||
seq2  AGGCATGCCTTCAGC-ACTGAGC-AAATTCA--GCTAGC-TAGATTACTT  45

seq1  AGTGAGACATTGTCTTAAAATAAGAGGCAAACAGAGGGCCAGAGATAAAC  99
      ||||||||| |||| |||||||||| ||| ||||| |||||||||||   
seq2  AGTGAGACA-TGTC-TAAAATAAGA-GCATACAGA-GGCCAGAGATA---  88

seq1  CTTGATGCCACAGTACACCCATGTGCTAGGAACAGGGCTCCATCCTCAGT  149
      | |||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  CCTGATGCCACAGTACACCCATGTGCTA-GAACA-GGCTCCATCCTCAGT  136

seq1  ACTGAAAAATAAAGAGGAGAAGAAAATAAATACCATGACTACAGGTATGA  199
      |||| |||||||    ||||   |||||||||||||||||||||||||||
seq2  ACTG-AAAATAA----GAGAGAGAAATAAATACCATGACTACAGGTATGA  181

seq1  TAGCTACAGGCCACATGGATGCAATATTCAATCATATGAACTTAAATATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACAGGCCACATGGATGCAATATTCAATCATATGAACTTAAATATA  231

seq1  CAGCTTAGTCT-CCCCATCACTCCAACCACAATGCAAAAGTTCATAGCCT  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGTCTCCCCCATCACTCCAACCACAATGCAAAAGTTCATAGCCT  281

seq1  TGGGAGCCCTGGGAACATTGCTGTCATCACAGAATCTTTGATTAAGCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCCTGGGAACATTGCTGTCATCACAGAATCTTTGATTAAGCAGA  331

seq1  AGCACTTTGCAAACAAGGGCTATGCAAGAAACCACAAAGAGTTGTCAACG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTGCAAACAAGGGCTATGCAAGAAACCACAAAGAGTTGTCAACG  381

seq1  ATTTCTTAATATGTCTGTGGTCTGAAGCATTTCCCACAATTTCTTCAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAATATGTCTGTGGTCTGAAGCATTTCCCACAATTTCTTCAAAC  431

seq1  TGCAAGAGTAAAATGAATTATTGTGCATCCAGATATTTGCAGTAAGCCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGTAAAATGAATTATTGTGCATCCAGATATTTGCAGTAAGCCCT  481

seq1  GCTCGTTCATGTTAGCTGGAGCCTGTTCCTTCTTCCTCACTTTGGTCCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTTCATGTTAGCTGGAGCCTGTTCCTTCTTCCTCACTTTGGTCCTG  531

seq1  TATCTGGTGACTTCTATGGTCACACGTGTGGTGGTAAGTAGGGCAGTGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGTGACTTCTATGGTCACACGTGTGGTGGTAAGTAGGGCAGTGGG  581

seq1  GAGATGTTCCTTCTAAGGTTGGTGTTGCAAAGGCAAGAGTGGAGAGGGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTCCTTCTAAGGTTGGTGTTGCAAAGGCAAGAGTGGAGAGGGTA  631

seq1  GGCTAAGAAGAAGCTTTCTTGAGGAGATTCCCACCCTCTCTAGTGAGGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGAAGAAGCTTTCTTGAGGAGATTCCCACCCTCTCTAGTGAGGAT  681

seq1  TGAACCTAGGGCTTCCCACATGTTGTATCCTCAGGCCCACTTTCAGTTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTAGGGCTTCCCACATGTTGTATCCTCAGGCCCACTTTCAGTTAT  731

seq1  TTTGAAACAGAGCCTTAAACTTACGATCCTCCTGCCTCCATCTCCCTAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACAGAGCCTTAAACTTACGATCCTCCTGCCTCCATCTCCCTAGA  781

seq1  GTTGGACATGCCTGCTTTGGGGGGACATATGTAAAACCATATTGACACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACATGCCTGCTTTGGGGGGACATATGTAAAACCATATTGACACAT  831

seq1  CTCTTCAAATGGCTCAGATAATGAAGCAAGAGAGATTCTATCAGCATGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAAATGGCTCAGATAATGAAGCAAGAGAGATTCTATCAGCATGCC  881

seq1  AACATGCAGCAGCAGCACAGCCTCTCCCTCCAGCTGACCAGGAGTGCAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCAGCAGCAGCACAGCCTCTCCCTCCAGCTGACCAGGAGTGCAGC  931

seq1  CAACTGGCAGTACCCACTGTCTGACTATCACCCTTGCCCGGAGGTTGGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCAGTACCCACTGTCTGACTATCACCCTTGCCCGGAGGTTGGCA  981

seq1  TCTGCTGAAGAGCGATGCCTCTAGGTTAAGTGTTTTCTCCAGTGGAAGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAAGAGCGATGCCTCTAGGTTAAGTGTTTTCTCCAGTGGAAGTT  1031

seq1  TACATCCAATAACTGGCTGATAGAACTGTGAAATGCAGTCTCGTCACCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAATAACTGGCTGATAGAACTGTGAAATGCAGTCTCGTCACCTT  1081

seq1  CCATCTCAAGGTCTACGCAAACTGTAGAATTC  1130
      ||||||||||||||||||||||||||||||||
seq2  CCATCTCAAGGTCTACGCAAACTGTAGAATTC  1113

seq1: chr6_48559210_48559831
seq2: B6Ng01-145I13.g_67_688

seq1  GAATTCTAGGAAAGATGTGTCTGTTAGAAAAGGAAACAGGGTAGAGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAAAGATGTGTCTGTTAGAAAAGGAAACAGGGTAGAGGGAA  50

seq1  GGTGACAGGTGGGGAAGGCCCCCGAGGCAGACTCTCTCTCTGGTCTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGGTGGGGAAGGCCCCCGAGGCAGACTCTCTCTCTGGTCTGGGT  100

seq1  CTCCTGGGAAGGTAAAGGGTCTTTGGTACATATAGGAGCTCAACAGGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGAAGGTAAAGGGTCTTTGGTACATATAGGAGCTCAACAGGACG  150

seq1  AAGACTCTGTGGGATTTCTGGGCTGAGAAAAGCCAGTGGCTGGGCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTGTGGGATTTCTGGGCTGAGAAAAGCCAGTGGCTGGGCTTTTG  200

seq1  ACATTGGAAGTCCTGCTTTACTGCTGACAAAGGAGTTGTGAGGTACCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGAAGTCCTGCTTTACTGCTGACAAAGGAGTTGTGAGGTACCATC  250

seq1  CACTTTTCAACTGTTCCTGGGCAGGGTCCTGTACTGTGGAAGGGGTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCAACTGTTCCTGGGCAGGGTCCTGTACTGTGGAAGGGGTGAGT  300

seq1  GAGGAGACCTGACAGGCCCCTGAGGTGCTTGCTTGTCCCCGGCACTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACCTGACAGGCCCCTGAGGTGCTTGCTTGTCCCCGGCACTTGGC  350

seq1  CTAGCCTCATTCCTATTTCTGCACTTCGTGTGCTTCAGCCTATGCTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCATTCCTATTTCTGCACTTCGTGTGCTTCAGCCTATGCTGACA  400

seq1  CTAACATCCCCTGTTATCGCCCCAGCCCTAGGCCCCACCACCTGCTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATCCCCTGTTATCGCCCCAGCCCTAGGCCCCACCACCTGCTGCAG  450

seq1  GCCACACTCCCCTGCAGTTTCTGCAGTTGTCAGAACAGCGGGTGGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTCCCCTGCAGTTTCTGCAGTTGTCAGAACAGCGGGTGGTTTGT  500

seq1  GGACTTCCCATCAGGGGAGTTCATTTCCAGATTGCATCCTGACCCAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCCCATCAGGGGAGTTCATTTCCAGATTGCATCCTGACCCAGTGT  550

seq1  GGGTATCTAGGCTTGAGCAGGCCACAGGAGGGTGGAGGTGACTGGGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCTAGGCTTGAGCAGGCCACAGGAGGGTGGAGGTGACTGGGGCTT  600

seq1  TATCGTGTGTGTGTGTGTGTGT  622
      ||||||||||||||||||||||
seq2  TATCGTGTGTGTGTGTGTGTGT  622