BAC Information

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BAC

Clone NameB6Ng01-146C21
Chromosome6 (Build37)
Map Location 96,557,531 - 96,692,577
singlet/doubletdoublet
Overlap geneC630007B19Rik
Upstream geneSuclg2, LOC665886, LOC545867, LOC100043685, 1700123L14Rik
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b, LOC641241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146C21.bB6Ng01-146C21.g
ACCDH943392DH943393
length1,1321,051
definitionDH943392|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C21, 5' end.DH943393|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,557,531 - 96,558,582)(96,691,533 - 96,692,577)
sequence
gaattccctgtttagatttgtaccccatttttaattgggttatttgtttt
cttgatatctagtttttctgagctctttatatattttggatattagtcct
ctatcagatgggagttggtaaaacatcatttcccattatggaggcttcct
gtttatccaaattacaatgtcctttgccgtgcagatgcttttcaatgtca
tgatgtcccacttattaatggttgaacttagtgtctgtgctaacagtact
ctgttcagaaagtctttttcttacagtcagttagttcaaggctattcccc
actttatcttctatcacgttcactgtgtctagttttctgttgatgtctct
gatccatttgcagttaagttttatgcagggtggtaagtatgaatctattt
ggattcttcatgcaaccatctagtttgaccagcaccatttattgaagatg
caatctttcttcctatgtgtgtatctggcttctccatcaaaaatcagtat
ccaaaagtatatggatttttgtctgtgtcttctatgtacatcccttgatt
aataatgtggttttatgttaatcctgtgttccttaatgtctcgctaagct
gctgcaggagtgcttcctgagctgatctttgtctcaagccttaactgcag
aagtccctttcaaagcccattagcagaacttacttccaggcagagagatc
acctctcattggatagctaatggatgctgctataagatactagaaggtac
cttaccattccacataggccaggaatagacaagcaatgtcatggaggctt
atttcttcaagagaaggaagagaatggctttctccaggcttctgaggtgg
aatcataaaattaatagagttatgagagcaatgcctgtagcatttctggc
atactctttttttataaaaaagcttataggccctgtccaggagaagaaga
ttacacatggataaagatcatgagattccatctgagggtagttgttatgc
acaccatactcacagtaattgtgtttctcagtcaccattgagagtactca
ttaatgtcaggagctatgtcagttctgtcgcataagcaagacagttggat
tctccatccttgttcgaacattaggcagagtc
gaattcctgtgtgtgtcttctgggtgctgggattacgtgtgggctatcac
ttgactttttatgtgggtattgaggagctaaatccagtccttatgcttac
acagaaaggcattgatccacagatccagtcatgtccctctgcactacagt
gttcactgatttagagttgggatgagtttagatactaaattagtacatgc
taagtattattactcattgtttttatcaactgtatctttgtttctagttg
acccattttacagatggatacattgaagcactatatgataaatatcttgc
tcaaaggcaaataggcattaattgacaaggctagactttgaactcatgca
agtattaaactgagagtcatttatattacttagttagctacaagattatg
cctcatcttggtgtggtactacactcacagtcatgatgaaaatctagttg
aattatacaaagctagaccaggttaaaaaataaaaaatagaaacccacca
atactggcttcctatggctgctttcctcacaggacaacatttcaacaaga
gaactcaggaaggcaagatcttcagtaaactggcctgttcatgaggcagc
cacagatgaagtaaggttggctgtggatgagccagccattgattctagca
gaactattcttcagtaagcctttcagtttttctgatggcaatttgaacag
cttgtgcccagcagtatccctcccacctccagaaagaaaaaagtctcact
ctggagcaagcttctgatgggaacttgaagctcaggcatgtgagaatgct
gtttcgcaccatagtgaggtatgagaggcgactatgctgagcagtttgtg
tggtggccacaggtcagcttgatgaattcccactgggatgattagatggc
tagaggagatgctcaggttgtcttgaaagacatcccccagctagatgcaa
tccatccatcacatgacagcatctctgttgataatgcagttgtgtagcag
cgatgggcgtagaaattgaatattgttaaagtttaatacacttttgcatt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_96557531_96558582
seq2: B6Ng01-146C21.b_130_1177

seq1  TTTGGATATTAGTCCTCTATCAGATGGGAGTTGGTAAAACATCATTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATATTAGTCCTCTATCAGATGGGAGTTGGTAAAACATCATTTCCC  50

seq1  ATTATGGAGGCTTCCTGTTTATCCAAATTACAATGTCCTTTGCCGTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGAGGCTTCCTGTTTATCCAAATTACAATGTCCTTTGCCGTGCAG  100

seq1  ATGCTTTTCAATGTCATGATGTCCCACTTATTAATGGTTGAACTTAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTCAATGTCATGATGTCCCACTTATTAATGGTTGAACTTAGTGT  150

seq1  CTGTGCTAACAGTACTCTGTTCAGAAAGTCTTTTTCTTACAGTCAGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTAACAGTACTCTGTTCAGAAAGTCTTTTTCTTACAGTCAGTTAG  200

seq1  TTCAAGGCTATTCCCCACTTTATCTTCTATCACGTTCACTGTGTCTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCTATTCCCCACTTTATCTTCTATCACGTTCACTGTGTCTAGTT  250

seq1  TTCTGTTGATGTCTCTGATCCATTTGCAGTTAAGTTTTATGCAGGGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGATGTCTCTGATCCATTTGCAGTTAAGTTTTATGCAGGGTGGT  300

seq1  AAGTATGAATCTATTTGGATTCTTCATGCAACCATCTAGTTTGACCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGAATCTATTTGGATTCTTCATGCAACCATCTAGTTTGACCAGCA  350

seq1  CCATTTATTGAAGATGCAATCTTTCTTCCTATGTGTGTATCTGGCTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATTGAAGATGCAATCTTTCTTCCTATGTGTGTATCTGGCTTCTC  400

seq1  CATCAAAAATCAGTATCCAAAAGTATATGGATTTTTGTCTGTGTCTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAATCAGTATCCAAAAGTATATGGATTTTTGTCTGTGTCTTCTA  450

seq1  TGTACATCCCTTGATTAATAATGTGGTTTTATGTTAATCCTGTGTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATCCCTTGATTAATAATGTGGTTTTATGTTAATCCTGTGTTCCTT  500

seq1  AATGTCTCGCTAAGCTGCTGCAGGAGTGCTTCCTGAGCTGATCTTTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCGCTAAGCTGCTGCAGGAGTGCTTCCTGAGCTGATCTTTGTCT  550

seq1  CAAGCCTTAACTGCAGAAGTCCCTTTCAAAGCCCATTAGCAGAACTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTAACTGCAGAAGTCCCTTTCAAAGCCCATTAGCAGAACTTACT  600

seq1  TCCAGGCAGAGAGATCACCTCTCATTGGATAGCTAATGGATGCTGCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGAGAGATCACCTCTCATTGGATAGCTAATGGATGCTGCTATA  650

seq1  AGATACTAGAAGGTACCTTACCATTCCACATAGGCCAGGAATAGACAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTAGAAGGTACCTTACCATTCCACATAGGCCAGGAATAGACAAGC  700

seq1  AATGTCATGGAGGCTTATTTCTTCAAGAGAAGGAAGAGAATGGCTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATGGAGGCTTATTTCTTCAAGAGAAGGAAGAGAATGGCTTTCTC  750

seq1  CAGGCTTCTGAGGTGGAATCATAAAATTAATAGAGTTATGAGAGCAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTGAGGTGGAATCATAAAATTAATAGAGTTATGAGAGCAATGC  800

seq1  CTGTAGCATTTCTGGCATACTC-TTTTTTATAAAAAAGCTTATAGGCCCT  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGTAGCATTTCTGGCATACTCTTTTTTTATAAAAAAGCTTATAGGCCCT  850

seq1  GTCCAGGAG-AGAAGATTACACATGGATATAGATCATGAGATTCCATCTG  898
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  GTCCAGGAGAAGAAGATTACACATGGATAAAGATCATGAGATTCCATCTG  900

seq1  AGGGTAGTTTGTTATGCACA-CATACACACAGTAATTGTGTTTCATCAGT  947
      ||||||| |||||||||||| ||||| ||||||||||||||||| |||| 
seq2  AGGGTAG-TTGTTATGCACACCATACTCACAGTAATTGTGTTTC-TCAG-  947

seq1  TCACAATTGAGAGTCACT-ATAAGTGTCAGGAAGCTAGTGTCAGTTCTGT  996
      |||| ||||||||| ||| || | ||||||| ||||| ||||||||||||
seq2  TCACCATTGAGAGT-ACTCATTAATGTCAGG-AGCTA-TGTCAGTTCTGT  994

seq1  CGGCATAAGCAAGACAGTGTGATTCTCCATCATTGTTCAGACATTAGGCA  1046
      | ||||||||||||||||  ||||||||||| ||||||  ||||||||| 
seq2  C-GCATAAGCAAGACAGTTGGATTCTCCATCCTTGTTCGAACATTAGGC-  1042

seq1  AGAGTC  1052
      ||||||
seq2  AGAGTC  1048

seq1: chr6_96691533_96692577
seq2: B6Ng01-146C21.g_66_1116 (reverse)

seq1  TAATGCAAAAGTGTA-TAAATCTTAACAATA-TCAATTTCTTACG-CCAT  47
      ||||||||||||||| ||||  ||||||||| |||||||| |||| ||||
seq2  TAATGCAAAAGTGTATTAAACTTTAACAATATTCAATTTC-TACGCCCAT  49

seq1  CGCTGCTACACAACTGC-TTATCAAACAGAGATGCTGTCATGTGATGGAT  96
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  CGCTGCTACACAACTGCATTATC-AACAGAGATGCTGTCATGTGATGGAT  98

seq1  GGATTGCATCTAGCTGGGGGATGTCTTTCAAGACAACCTGAGCATCTCCT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCATCTAGCTGGGGGATGTCTTTCAAGACAACCTGAGCATCTCCT  148

seq1  CTAGCCATCTAATCAT-CCAGTGTG-ATTCATC-AGCTGACCTGTGGCCA  193
      |||||||||||||||| |||||| | ||||||| ||||||||||||||||
seq2  CTAGCCATCTAATCATCCCAGTGGGAATTCATCAAGCTGACCTGTGGCCA  198

seq1  CCACAC-AACTGCTCAGCATAGTCGCCTCTCATACCTCACTATGGTGCGA  242
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAACTGCTCAGCATAGTCGCCTCTCATACCTCACTATGGTGCGA  248

seq1  AACAGCATTCTCACATGCCTGAGCTTCAAGTTCCCATCAGAAGCTTGCTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATTCTCACATGCCTGAGCTTCAAGTTCCCATCAGAAGCTTGCTC  298

seq1  CAGAGTGAGACTTTTTTCTTTCTGGAGGTGGGAGGGATACTGCTGGGCAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGACTTTTTTCTTTCTGGAGGTGGGAGGGATACTGCTGGGCAC  348

seq1  AAGCTGTTCAAATTGCCATCAGAAAAACTGAAAGGCTTACTGAAGAATAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTCAAATTGCCATCAGAAAAACTGAAAGGCTTACTGAAGAATAG  398

seq1  TTCTGCTAGAATCAATGGCTGGCTCATCCACAGCCAACCTTACTTCATCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTAGAATCAATGGCTGGCTCATCCACAGCCAACCTTACTTCATCT  448

seq1  GTGGCTGCCTCATGAACAGGCCAGTTTACTGAAGATCTTGCCTTCCTGAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGCCTCATGAACAGGCCAGTTTACTGAAGATCTTGCCTTCCTGAG  498

seq1  TTCTCTTGTTGAAATGTTGTCCTGTGAGGAAAGCAGCCATAGGAAGCCAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGTTGAAATGTTGTCCTGTGAGGAAAGCAGCCATAGGAAGCCAG  548

seq1  TATTGGTGGGTTTCTATTTTTTATTTTTTAACCTGGTCTAGCTTTGTATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGGGTTTCTATTTTTTATTTTTTAACCTGGTCTAGCTTTGTATA  598

seq1  ATTCAACTAGATTTTCATCATGACTGTGAGTGTAGTACCACACCAAGATG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTAGATTTTCATCATGACTGTGAGTGTAGTACCACACCAAGATG  648

seq1  AGGCATAATCTTGTAGCTAACTAAGTAATATAAATGACTCTCAGTTTAAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAATCTTGTAGCTAACTAAGTAATATAAATGACTCTCAGTTTAAT  698

seq1  ACTTGCATGAGTTCAAAGTCTAGCCTTGTCAATTAATGCCTATTTGCCTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATGAGTTCAAAGTCTAGCCTTGTCAATTAATGCCTATTTGCCTT  748

seq1  TGAGCAAGATATTTATCATATAGTGCTTCAATGTATCCATCTGTAAAATG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGATATTTATCATATAGTGCTTCAATGTATCCATCTGTAAAATG  798

seq1  GGTCAACTAGAAACAAAGATACAGTTGATAAAAACAATGAGTAATAATAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACTAGAAACAAAGATACAGTTGATAAAAACAATGAGTAATAATAC  848

seq1  TTAGCATGTACTAATTTAGTATCTAAACTCATCCCAACTCTAAATCAGTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGTACTAATTTAGTATCTAAACTCATCCCAACTCTAAATCAGTG  898

seq1  AACACTGTAGTGCAGAGGGACATGACTGGATCTGTGGATCAATGCCTTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTAGTGCAGAGGGACATGACTGGATCTGTGGATCAATGCCTTTC  948

seq1  TGTGTAAGCATAAGGACTGGATTTAGCTCCTCAATACCCACATAAAAAGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGCATAAGGACTGGATTTAGCTCCTCAATACCCACATAAAAAGT  998

seq1  CAAGTGATAGCCCACACGTAATCCCAGCACCCAGAAGACACACACAGGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATAGCCCACACGTAATCCCAGCACCCAGAAGACACACACAGGAA  1048

seq1  TTC  1045
      |||
seq2  TTC  1051