BAC Information

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BAC

Clone NameB6Ng01-147D01
Chromosome6 (Build37)
Map Location 11,974,934 - 12,091,177
singlet/doubletdoublet
Overlap geneEG625347, LOC435879
Upstream geneNdufa4, Phf14, LOC100040844
Downstream geneThsd7a, LOC667735, LOC384350, Tmem106b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147D01.bB6Ng01-147D01.g
ACCDH944139DH944140
length1,1361,138
definitionDH944139|Mus musculus domesticus DNA, BAC clone: B6Ng01-147D01, 5' end.DH944140|Mus musculus domesticus DNA, BAC clone: B6Ng01-147D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,090,032 - 12,091,177)(11,974,934 - 11,976,081)
sequence
gaattcctagtgatactgaggagtctggcggttcttaagaagagcagcgt
caagtgttcaaattcagtggtgctacttgcttccctgtgtggcacctctg
ttcccggcacatctgtcagaagcagcaatcttatgttaagggtggtctgg
gagaaggaaaaaagaagtgtccagggcaggagactttctaaagatatggt
aaggatagcatctgtcaggacacagtggagaagggagatgtggcatggat
cacttcagaagcagatatgacccaataccatctccctaaaacccaccaag
gggcaagtcttaaagagagaactagactagactgggctctagtagccgag
atagttggctggtggccatgtgagttttagcactctcacaactgtccttg
ccccactttctgcactctccaatctaaatattgttgaatttctgtgtttt
tacagaggtaaaagaactgagccatgttgaaagaccctatccaaggtcac
atatcacataactggcaatggcagactcagagccaggtggagttgcctca
gcagcacatctggcacaaaggtaaccgtaacaattaacacactcaccaaa
ttctcaggcaccctttatgcatgacctagattcctcttggaacccactaa
tggcagacctgctacctccacagtgaagccatcataccaccttgtcatag
caaataaaaattccccagcatgctccctgctatctaatgaatgactggtt
ttaggaacaccgtggtagagcatcctgttttccttccagtccatatctcc
tcaccagctattttccccaccaataatcttttgttcttatttagtgaaca
aaagacagtgcctaaagaaacggtcttgccatttttaaaaagaatatcca
tatctaatcttcttttactctatcagctctaaagggaatttcacatgaat
atagctgataaagtcaatttaaaagaagctttcctgacttaaaattatac
gaataatcacattctatagaaaaatttggactaacagattaggcaagaga
aaaaaaaaaaaactaaactacccatattccagtacttcgagaataaatcc
attaatgtttaacatcatgaacactctgcctgtaga
gaattctctgtttagttctgcaccccattttttaattgggttatttggtc
ttttgggggttaacttattaggttgtttatgtattttggatattagccct
gtattgtatgtagtgttagtgacgatttttcccccaatctgtagattacc
aatttgtcctattgatggtatcttttgacttacagtggcttttcagtttc
atgaggtaccattttgattctagagcctgagccattggtgttctattctt
tgctactttctcttctattagattcactgtatctggttttatgttgaggt
ccttgatccacttggacttgagctttttgcaaggtgacaaatatgggtct
attttcatttttctacatatagacagccagtacaattctaaaatttaaat
atatataatatatatgtaatatatgtaatatatacaggaaaactgatgtg
ttataaagaagctggtgaatatcttacatataatagaaatgagcattttg
ttctgacttttcatgtaaaatttccatgtgttgttttatgtgaaatattt
ttaaagatatgctaagtcatttatgtacaatactttttattatatattat
gatatcaccttcttctttactagactataactcatgttctgtcgatttaa
aaacagctgtttttggttagacgtttgttaacctgagtgcatggacacta
atttcaagacatagtaaagctacttgctattttgtatagcatgtttgctt
ctgaaagtgttggagatgtatttcatcattaatttagaaatttgaaaatt
gtctccattgtagaaatataaactgctatatgtaatttcccgtttatcta
agtactaatatattagtcttattttcatcatttaatattgctgaaaagtc
tcctgaatacttgtttctaaaatcttcataaggtagtttttgtttgtttt
actcactgtattagtagccaaacatgcgagtgcaatacctgaaaagaaca
aattaaaaatagagaggctagtgcttaattccaaagtatttaggggtcga
tctttggtcagcatcctgggtgtggacacttgaaacctgtacatgttttg
ggtttattggtaaagaaaggattagcttcattccagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12090032_12091177
seq2: B6Ng01-147D01.b_47_1182 (reverse)

seq1  TCTACAGCCAAGAGTGTTCAATGATGTTAAAACATTAATATGATTTA-TC  49
      ||||||| | ||||||||| |||||||| ||||||||||  |||||| ||
seq2  TCTACAGGC-AGAGTGTTC-ATGATGTT-AAACATTAAT-GGATTTATTC  46

seq1  TCGAGGTACTGGGATTATGGGTAGTTTTAGTTTTTTTTTTTTTCCTCTTT  99
      |||| ||||| ||| ||||||||| |||||||||||||||||| ||||| 
seq2  TCGAAGTACT-GGAATATGGGTAG-TTTAGTTTTTTTTTTTTT-CTCTTG  93

seq1  GCTTATCTGTTAGTTCCAATTTTTTCTATAAGAATGTGGATTATTCGTAT  149
       || ||||||||| ||||| ||||||||| ||||||| ||||||||||||
seq2  CCTAATCTGTTAG-TCCAAATTTTTCTAT-AGAATGT-GATTATTCGTAT  140

seq1  TAATTTTTAAGTCAGGAAAAGCTTCTTTTAAATTGAACTTTATCAGCTAT  199
        | |||||||||||| |||||||||||||||||| ||||||||||||||
seq2  --AATTTTAAGTCAGG-AAAGCTTCTTTTAAATTG-ACTTTATCAGCTAT  186

seq1  ATTCAATGTGAAA-TCCCTTTAGAGCTGATAGAGT-AAAGAAGATTAGAT  247
      |||| |||||||| ||||||||||||||||||||| ||||||||||||||
seq2  ATTC-ATGTGAAATTCCCTTTAGAGCTGATAGAGTAAAAGAAGATTAGAT  235

seq1  ATGGATATTCTTTTTAAAAATGGCAAGACCGTTTCTTTAGGCACTTGTCT  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGGATATTCTTTTTAAAAATGGCAAGACCGTTTCTTTAGGCAC-TGTCT  284

seq1  TTTGTTCACTAAATAAGAAC-AAAGATTATTGGTGGGGAAAATAGCTGGT  346
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTGTTCACTAAATAAGAACAAAAGATTATTGGTGGGGAAAATAGCTGGT  334

seq1  GAGGAGATATGGACTGGAAGG-AAACAGGATGCTCTACCACGGTGTTCCT  395
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGGAGATATGGACTGGAAGGAAAACAGGATGCTCTACCACGGTGTTCCT  384

seq1  -AAACCAGTCATTCATTAGATAGCAGGGAGCATGCTGGGGAATTTTTATT  444
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGTCATTCATTAGATAGCAGGGAGCATGCTGGGGAATTTTTATT  434

seq1  TGCTATGACAAGGTGGTATGATGGCTTCACTGTGGAGGTAGCAGGTCTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGACAAGGTGGTATGATGGCTTCACTGTGGAGGTAGCAGGTCTGC  484

seq1  CATTAGTGGGTTCCAAGAGGAATCTAGGTCATGCATAAAGGGTGCCTGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTGGGTTCCAAGAGGAATCTAGGTCATGCATAAAGGGTGCCTGAG  534

seq1  AATTTGGTGAGTGTGTTAATTGTTACGGTTACCTTTGTGCCAGATGTGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTGAGTGTGTTAATTGTTACGGTTACCTTTGTGCCAGATGTGCT  584

seq1  GCTGAGGCAACTCCACCTGGCTCTGAGTCTGCCATTGCCAGTTATGTGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCAACTCCACCTGGCTCTGAGTCTGCCATTGCCAGTTATGTGAT  634

seq1  ATGTGACCTTGGATAGGGTCTTTCAACATGGCTCAGTTCTTTTACCTCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCTTGGATAGGGTCTTTCAACATGGCTCAGTTCTTTTACCTCTG  684

seq1  TAAAAACACAGAAATTCAACAATATTTAGATTGGAGAGTGCAGAAAGTGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACACAGAAATTCAACAATATTTAGATTGGAGAGTGCAGAAAGTGG  734

seq1  GGCAAGGACAGTTGTGAGAGTGCTAAAACTCACATGGCCACCAGCCAACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGACAGTTGTGAGAGTGCTAAAACTCACATGGCCACCAGCCAACT  784

seq1  ATCTCGGCTACTAGAGCCCAGTCTAGTCTAGTTCTCTCTTTAAGACTTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGGCTACTAGAGCCCAGTCTAGTCTAGTTCTCTCTTTAAGACTTGC  834

seq1  CCCTTGGTGGGTTTTAGGGAGATGGTATTGGGTCATATCTGCTTCTGAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTGGGTTTTAGGGAGATGGTATTGGGTCATATCTGCTTCTGAAG  884

seq1  TGATCCATGCCACATCTCCCTTCTCCACTGTGTCCTGACAGATGCTATCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATGCCACATCTCCCTTCTCCACTGTGTCCTGACAGATGCTATCC  934

seq1  TTACCATATCTTTAGAAAGTCTCCTGCCCTGGACACTTCTTTTTTCCTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATATCTTTAGAAAGTCTCCTGCCCTGGACACTTCTTTTTTCCTTC  984

seq1  TCCCAGACCACCCTTAACATAAGATTGCTGCTTCTGACAGATGTGCCGGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACCACCCTTAACATAAGATTGCTGCTTCTGACAGATGTGCCGGG  1034

seq1  AACAGAGGTGCCACACAGGGAAGCAAGTAGCACCACTGAATTTGAACACT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGTGCCACACAGGGAAGCAAGTAGCACCACTGAATTTGAACACT  1084

seq1  TGACGCTGCTCTTCTTAAGAACCGCCAGACTCCTCAGTATCACTAGGAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCTGCTCTTCTTAAGAACCGCCAGACTCCTCAGTATCACTAGGAAT  1134

seq1  TC  1146
      ||
seq2  TC  1136

seq1: chr6_11974934_11976081
seq2: B6Ng01-147D01.g_69_1206

seq1  GAATTCTCTGTTTAGTTCTGCACCCCATTTTTTAATTGGGTTATTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGTTCTGCACCCCATTTTTTAATTGGGTTATTTGGTC  50

seq1  TTTTGGGGGTTAACTTATTAGGTTGTTTATGTATTTTGGATATTAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGGTTAACTTATTAGGTTGTTTATGTATTTTGGATATTAGCCCT  100

seq1  GTATTGTATGTAGTGTTAGTGACGATTTTTCCCCCAATCTGTAGATTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTATGTAGTGTTAGTGACGATTTTTCCCCCAATCTGTAGATTACC  150

seq1  AATTTGTCCTATTGATGGTATCTTTTGACTTACAGTGGCTTTTCAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCCTATTGATGGTATCTTTTGACTTACAGTGGCTTTTCAGTTTC  200

seq1  ATGAGGTACCATTTTGATTCTAGAGCCTGAGCCATTGGTGTTCTATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTACCATTTTGATTCTAGAGCCTGAGCCATTGGTGTTCTATTCTT  250

seq1  TGCTACTTTCTCTTCTATTAGATTCACTGTATCTGGTTTTATGTTGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTTCTCTTCTATTAGATTCACTGTATCTGGTTTTATGTTGAGGT  300

seq1  CCTTGATCCACTTGGACTTGAGCTTTTTGCAAGGTGACAAATATGGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATCCACTTGGACTTGAGCTTTTTGCAAGGTGACAAATATGGGTCT  350

seq1  ATTTTCATTTTTCTACATATAGACAGCCAGTACAATTCTAAAATTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTTTCTACATATAGACAGCCAGTACAATTCTAAAATTTAAAT  400

seq1  ATATATAATATATATGTAATATATGTAATATATACAGGAAAACTGATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATATATATGTAATATATGTAATATATACAGGAAAACTGATGTG  450

seq1  TTATAAAGAAGCTGGTGAATATCTTACATATAATAGAAATGAGCATTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGAAGCTGGTGAATATCTTACATATAATAGAAATGAGCATTTTG  500

seq1  TTCTGACTTTTCATGTAAAATTTCCATGTGTTGTTTTATGTGAAATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTTTTCATGTAAAATTTCCATGTGTTGTTTTATGTGAAATATTT  550

seq1  TTAAAGATATGCTAAGTCATTTATGTACAATACTTTTTATTATATATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATATGCTAAGTCATTTATGTACAATACTTTTTATTATATATTAT  600

seq1  GATATCACCTTCTTCTTTACTAGACTATAACTCATGTTCTGTCGATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCACCTTCTTCTTTACTAGACTATAACTCATGTTCTGTCGATTTAA  650

seq1  AAACAGCTGTTTTTGGTTAGACGTTTGTTAACCTGAGTGCATGGACACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGTTTTTGGTTAGACGTTTGTTAACCTGAGTGCATGGACACTA  700

seq1  ATTTCAAGACATAGTAAAGCTACTTGCTATTTTGTATAGCATGTTTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGACATAGTAAAGCTACTTGCTATTTTGTATAGCATGTTTGCTT  750

seq1  CTGAAAGTGTTGGAGATGTATTTCATCATTAA-TTAGAAATTTGAAAATT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGAAAGTGTTGGAGATGTATTTCATCATTAATTTAGAAATTTGAAAATT  800

seq1  GTCTCCATTGTAGAAATATAAACTGCTATATGTAATTTCCCGTTTATCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATTGTAGAAATATAAACTGCTATATGTAATTTCCCGTTTATCTA  850

seq1  AGTACTAATATATTAGTCTTTATTTCATCATTTATTATTGCTGAAAAGTC  899
      ||||||||||||||||||||  |||||||||||| |||||||||||||||
seq2  AGTACTAATATATTAGTCTTATTTTCATCATTTAATATTGCTGAAAAGTC  900

seq1  TTCCTGAATACTTGTTTCTTAAAATCTTCATAAGGTAGTTTTTGTTTTGT  949
       ||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  -TCCTGAATACTTGTTTC-TAAAATCTTCATAAGGTAGTTTTTG-TTTGT  947

seq1  TTTAACTCACTGTATTAGTAGCCAAACATGCGAGTGGCAATACCTGAAAA  999
      ||| ||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TTT-ACTCACTGTATTAGTAGCCAAACATGCGAGT-GCAATACCTG-AAA  994

seq1  AGAACAAA-TAAAAATAGAGAGGCTAGGTGCTTAAATTCCAAAGTATTTA  1048
      |||||||| ||||||||||||||||| |||||| ||||||||||||||||
seq2  AGAACAAATTAAAAATAGAGAGGCTA-GTGCTT-AATTCCAAAGTATTTA  1042

seq1  GGGTCAGATCTTTGTCCAGCATTCCTGGGTGT-GACTCT---GACCTGGC  1094
      |||   ||||||||  ||||| |||||||||| ||| ||    |||||  
seq2  GGGGTCGATCTTTGGTCAGCA-TCCTGGGTGTGGACACTTGAAACCTG--  1089

seq1  CACATGTTTTGGGTTTTATTTGTAAATGAAGGATTATAGCTTTCATTTCC  1144
       |||||||||||| |||||| |||||  ||||||  |||| |||| ||||
seq2  TACATGTTTTGGG-TTTATTGGTAAAGAAAGGAT--TAGC-TTCA-TTCC  1134

seq1  AGGA  1148
      ||||
seq2  AGGA  1138