BAC Information

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BAC

Clone NameB6Ng01-147G20
Chromosome6 (Build37)
Map Location 93,091,164 - 93,260,549
singlet/doubletdoublet
Overlap geneLOC100043253
Upstream geneNr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik, LOC384461
Downstream geneLOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147G20.bB6Ng01-147G20.g
ACCDH944312DH944313
length1,0461,005
definitionDH944312|Mus musculus domesticus DNA, BAC clone: B6Ng01-147G20, 5' end.DH944313|Mus musculus domesticus DNA, BAC clone: B6Ng01-147G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,091,164 - 93,092,208)(93,259,555 - 93,260,549)
sequence
gaattccatcaggagaccaggacaggggtctatactcctgactgggacaa
aagaaacagctgaagtgtcacttggatgttggttttaaacagactgcaat
ttgctgtctgaagggaaaattgtatgtacgggacaccctccccccttgaa
aacggaatgagaagataccagcacaggccagctatagaggctgcctcctc
aaagcgtcagagtggggctggggtgatgatttagtgggtaaaatacttgt
agcacagacctgaggaactgtttgaatctacagaacctacctaggaatgg
acacacagtgtgtctataaagacagcatgcctgcgggaagatgggatgca
cagacaggaaaatcccagaagctcactcaccaactagcctagagttttat
gtcttctgcaggagagtggcctcatggaagtgggacgccatgagttaatc
agtattccagtaaagaagatgggggatgctgtctgcttacttcatcttgt
ttagaagggaactaaatgccagttttaacatactttaccattagtgagca
gccataagctcacctgcgttctaaaaacagggacataccttctctttcga
tggaaagacacctaagaatgtgtagcccagttttaaaatcatcatatatg
gtcggcatttataaaatgctttctatgtgctgggtactgtaattcctaag
ggaaaaatactcaaaattgttttccaagagtacaacgtgtagtctgttat
cacctcaattagatcagaaatgaaaggtttatgaaggtgtgtaacttgtc
caaaacaaccagaaagtaaccaagctgggaagtaaaatcagatttgtaag
atttataaccttaaactaaagccacatcaccttggtattctaatttcacc
ttgacccctgaccccagttcattagatagtagaatcattattaatgctta
atgcttctaaacgctatctcagcaactatatatcataagtcctcaaacaa
tgctttgttgaactctttagctgagtacccatgcacccttcagaaa
gaattctcatgtaagtgagagttgtggatgttgaactgaaaactgccttt
cctttccatcagcctcatgagcaaaggttcccatgattttccattcttta
ggggtaatccatcaatcagaaagagaagaaggagagtaagaactagggtc
ttgcattttttagctcattacaatgaaaagagaaatatgatctttctgtg
acaagaagattaattttgcaaccattttgttgattgattcaacaaataaa
atagacacgatatttaataagaatgaaatggagcgagaagtcaatttgaa
atagtagaaagattaagtgcgagataacaggaaaaagagagagagagagt
cctagattgatttggaagtgactgagaaggggaaacggtgtgtttggggt
catagctggagagggagcaggcacacaataacactaataaaagctggtga
tgaagcactccctctgcacaaacttgagctctctcctacccccaacctct
ccagtactcaattataccttgaacagtacatgcacatggccactgtctct
tcccttcccttggcttctggaactgtgctgtctattttctgtctaatcca
agcttgtcctttataggctcatcttcaccagcctatccatttcctgttgg
aggtcctttgccttgctctcctcttatttctaaagctgtctccctggtga
tctcaactatcttctatggcttcctatcacttataatcttacttgacttt
tatcttgccttgatcttgcctcctaattcctggccacagagcaattaccc
ttaataccatctttttgaatgcttttcatgtacctgatgctgagatgatc
caagtgtgagctccttcaggtctgaccctcttttcaggttctctttggtg
aatagcaacattaattttctttacttgcttagaagaaagccaggtactcc
catccccttaaccccatattcatgacagctcttatagaattgatctctaa
gtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93091164_93092208
seq2: B6Ng01-147G20.b_45_1080

seq1  GAATTCCATCAGGAGACCAGGACAGGGGTCTATACTCCTGACTGGGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGGAGACCAGGACAGGGGTCTATACTCCTGACTGGGACAA  50

seq1  AAGAAACAGCTGAAGTGTCACTTGGATGTTGGTTTTAAACAGACTGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGCTGAAGTGTCACTTGGATGTTGGTTTTAAACAGACTGCAAT  100

seq1  TTGCTGTCTGAAGGGAAAATTGTATGTACGGGACACCCTCCCCCCTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCTGAAGGGAAAATTGTATGTACGGGACACCCTCCCCCCTTGAA  150

seq1  AACGGAATGAGAAGATACCAGCACAGGCCAGCTATAGAGGCTGCCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAATGAGAAGATACCAGCACAGGCCAGCTATAGAGGCTGCCTCCTC  200

seq1  AAAGCGTCAGAGTGGGGCTGGGGTGATGATTTAGTGGGTAAAATACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGTCAGAGTGGGGCTGGGGTGATGATTTAGTGGGTAAAATACTTGT  250

seq1  AGCACAGACCTGAGGAACTGTTTGAATCTACAGAACCTACCTAGGAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGACCTGAGGAACTGTTTGAATCTACAGAACCTACCTAGGAATGG  300

seq1  ACACACAGTGTGTCTATAAAGACAGCATGCCTGCGGGAAGATGGGATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGTGTGTCTATAAAGACAGCATGCCTGCGGGAAGATGGGATGCA  350

seq1  CAGACAGGAAAATCCCAGAAGCTCACTCACCAACTAGCCTAGAGTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGAAAATCCCAGAAGCTCACTCACCAACTAGCCTAGAGTTTTAT  400

seq1  GTCTTCTGCAGGAGAGTGGCCTCATGGAAGTGGGACGCCATGAGTTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGCAGGAGAGTGGCCTCATGGAAGTGGGACGCCATGAGTTAATC  450

seq1  AGTATTCCAGTAAAGAAGATGGGGGATGCTGTCTGCTTACTTCATCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCCAGTAAAGAAGATGGGGGATGCTGTCTGCTTACTTCATCTTGT  500

seq1  TTAGAAGGGAACTAAATGCCAGTTTTAACATACTTTACCATTAGTGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGGAACTAAATGCCAGTTTTAACATACTTTACCATTAGTGAGCA  550

seq1  GCCATAAGCTCACCTGCGTTCTAAAAACAGGGACATACCTTCTCTTTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAGCTCACCTGCGTTCTAAAAACAGGGACATACCTTCTCTTTCGA  600

seq1  TGGAAAGACACCTAAGAATGTGTAGCCCAGTTTTAAAATCATCATATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGACACCTAAGAATGTGTAGCCCAGTTTTAAAATCATCATATATG  650

seq1  GTCGGCATTTATAAAATGCTTTCTATGTGCTGGGTACTGTAATTCCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCATTTATAAAATGCTTTCTATGTGCTGGGTACTGTAATTCCTAAG  700

seq1  GG-AAAATACTC-AAATTGTTTTCCAAGAGTACAACGTGTAGTCTGTTAT  748
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATACTCAAAATTGTTTTCCAAGAGTACAACGTGTAGTCTGTTAT  750

seq1  CACCTCAATTAGATCAGAAATGAAAGGTTTATGAAGGTGTGTAACTTGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAATTAGATCAGAAATGAAAGGTTTATGAAGGTGTGTAACTTGTC  800

seq1  CAAAACAACCAGGAAGTAACCAAGCTGGGAAGTAAAATCAGATTTGTAAG  848
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACCAGAAAGTAACCAAGCTGGGAAGTAAAATCAGATTTGTAAG  850

seq1  ATTTATAACCTTAAACTAAAGCCACATCACCTTGGTATTCTTAATTTCAC  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTTATAACCTTAAACTAAAGCCACATCACCTTGGTATTC-TAATTTCAC  899

seq1  CCTGACCCCCTGACCCCAGTCCAATAGGAATAGTAGAATCATTATAAATG  948
      | ||| |||||||||||||| || |||  |||||||||||||||| ||||
seq2  CTTGA-CCCCTGACCCCAGTTCATTAG--ATAGTAGAATCATTATTAATG  946

seq1  CTAAATGCTTCTAAAAAGGCTATCTCAGCAACTATATATCCAAAGGTCCT  998
      || |||||||||  ||| ||||||||||||||||||||| || | |||||
seq2  CTTAATGCTTCT--AAACGCTATCTCAGCAACTATATAT-CATAAGTCCT  993

seq1  CAAACAAGGGCTTTGTTGAACATCATTAAGCTGAGTACCCATTGCAC  1045
      |||||||  |||||||||||| || || ||||||||||||| |||||
seq2  CAAACAA-TGCTTTGTTGAAC-TC-TTTAGCTGAGTACCCA-TGCAC  1036

seq1: chr6_93259555_93260549
seq2: B6Ng01-147G20.g_70_1068 (reverse)

seq1  TAGAGGATCAATTCTATAAGAGCTGGTCATGAATATGGGGTTAAGGGGAT  50
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGA-GATCAATTCTATAAGAGCT-GTCATGAATATGGGGTTAAGGGGAT  48

seq1  GGGAGTTACCTGGC-TTCTTCTTAAGCAAGTAAAG-AAATTAATGTTGCT  98
      ||||| |||||||| |||||| ||||||||||||| ||||||||||||||
seq2  GGGAG-TACCTGGCTTTCTTC-TAAGCAAGTAAAGAAAATTAATGTTGCT  96

seq1  ATTCACC-AAGAGAACCTG-AAAGAGGGTCAGACCTGAAGGAGCTCACAC  146
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTCACCAAAGAGAACCTGAAAAGAGGGTCAGACCTGAAGGAGCTCACAC  146

seq1  TTGGATCATCTCAGCATCAGGTACATGAAAAGCATTC-AAAAGATGGTA-  194
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TTGGATCATCTCAGCATCAGGTACATGAAAAGCATTCAAAAAGATGGTAT  196

seq1  TAAGGGTAATTGCTCTGTGGCCAGGAATTAGGAGGCAAGATCAAGGCAAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTAATTGCTCTGTGGCCAGGAATTAGGAGGCAAGATCAAGGCAAG  246

seq1  ATAAAAGTCAAGTAAGATTATAAGTGATAGGAAGCCATAGAAGATAGTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTCAAGTAAGATTATAAGTGATAGGAAGCCATAGAAGATAGTTG  296

seq1  AGATCACCAGGGAGACAGC-TTAG-AATAAGAGGAGAGCAAGGCAAAGGA  342
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  AGATCACCAGGGAGACAGCTTTAGAAATAAGAGGAGAGCAAGGCAAAGGA  346

seq1  CCTCCAACAGGAAATGGATAGGCTGGTGAAGATGAGCCTATAAAGGACAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACAGGAAATGGATAGGCTGGTGAAGATGAGCCTATAAAGGACAA  396

seq1  GCTTGGATTAGACAGAAAATAGACAGCACAGTTCCAGAAGCCAAGGGAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGATTAGACAGAAAATAGACAGCACAGTTCCAGAAGCCAAGGGAAG  446

seq1  GGAAGAGACAGTGGCCATGTGCATGTACTGTTCAAGGTATAATTGAGTAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGACAGTGGCCATGTGCATGTACTGTTCAAGGTATAATTGAGTAC  496

seq1  TGGAGAGGTTGGGGGTAGGAGAGAGCTCAAGTTTGTGCAGAGGGAGTGCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGTTGGGGGTAGGAGAGAGCTCAAGTTTGTGCAGAGGGAGTGCT  546

seq1  TCATCACCAGCTTTTATTAGTGTTATTGTGTGCCTGCTCCCTCTCCAGCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCAGCTTTTATTAGTGTTATTGTGTGCCTGCTCCCTCTCCAGCT  596

seq1  ATGACCCCAAACACACCGTTTCCCCTTCTCAGTCACTTCCAAATCAATCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCAAACACACCGTTTCCCCTTCTCAGTCACTTCCAAATCAATCT  646

seq1  AGGACTCTCTCTCTCTCTTTTTCCTGTTATCTCGCACTTAATCTTTCTAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTCTCTCTCTCTTTTTCCTGTTATCTCGCACTTAATCTTTCTAC  696

seq1  TATTTCAAATTGACTTCTCGCTCCATTTCATTCTTATTAAATATCGTGTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAATTGACTTCTCGCTCCATTTCATTCTTATTAAATATCGTGTC  746

seq1  TATTTTATTTGTTGAATCAATCAACAAAATGGTTGCAAAATTAATCTTCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTGTTGAATCAATCAACAAAATGGTTGCAAAATTAATCTTCT  796

seq1  TGTCACAGAAAGATCATATTTCTCTTTTCATTGTAATGAGCTAAAAAATG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGAAAGATCATATTTCTCTTTTCATTGTAATGAGCTAAAAAATG  846

seq1  CAAGACCCTAGTTCTTACTCTCCTTCTTCTCTTTCTGATTGATGGATTAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCCTAGTTCTTACTCTCCTTCTTCTCTTTCTGATTGATGGATTAC  896

seq1  CCCTAAAGAATGGAAAATCATGGGAACCTTTGCTCATGAGGCTGATGGAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGAATGGAAAATCATGGGAACCTTTGCTCATGAGGCTGATGGAA  946

seq1  AGGAAAGGCAGTTTTCAGTTCAACATCCACAACTCTCACTTACATGAGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGCAGTTTTCAGTTCAACATCCACAACTCTCACTTACATGAGAA  996

seq1  TTC  995
      |||
seq2  TTC  999