BAC Information

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BAC

Clone NameB6Ng01-147J17
Chromosome6 (Build37)
Map Location 103,709,052 - 103,864,284
singlet/doubletdoublet
Overlap genenone
Upstream geneChl1, LOC666141
Downstream geneLOC100043345, Cntn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147J17.bB6Ng01-147J17.g
ACCDH944442DH944443
length1,0011,049
definitionDH944442|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J17, 5' end.DH944443|Mus musculus domesticus DNA, BAC clone: B6Ng01-147J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,709,052 - 103,710,056)(103,863,231 - 103,864,284)
sequence
ggtaagcactaatctatattatttaccaagtatgataccactttagaaaa
gtctactaagaattgtccaaagtcttcaaggcatccattttgtttaatgc
ctcaattcagtaatattgatgtatggctgcacctacagtaattggtttac
ttacctcctctggacggtaatagatactttcaaaataataagttctattt
actgagctgtttatgcacagcatcatcagagcttgtcttcactctttaat
cttcccaggctcattacatttccgttactgtgaccaggccaattttcaga
tacagaaaattaaacctgaagaggctaaatttcttactgatggttttgta
gcccagagccctagatggtgaaatatagccaagacttatatttatgcctg
ggcacagaaggtgagtaatctttatcttcctcttacactacgaaattgag
agtcttaattgctagggtttctataactgaatgcaacagacttggtgggt
taaaaaacagaagggttttttattttattttatgtttttatgttcctggc
atctggatattctaagatgaaagcactggctgactggtggatgctgaagt
tattccttgccttttagtaaactcccttccctttcgatccacacatgaca
aaggtggagcgagaacactccaaacttttctgtgtatctgcagactttag
caatgattctgcatcatgtgtattcttcaacagagttttgtttctgtgtg
atgagcggtcatgaagtatcaatagccagcacccgctaaaacaactattg
tttgctgtttcattaagggtatgcttcctatgatttgaaagagactattt
tagctgggtatagtggctcacacttgtcatccatgtactcatgatgcaca
ggtgaaatgattgcatggtctattgttttgagaccctattaaagaaggag
aaatagagagagatggatgaaagagaaaagagaggaggaagagaggaaag
a
gaattcagagctatttactttccgtggatacagatactacagcaaatctg
aagtggccatgagccaccacatcgcagtcagctaggtcaaagaagtctgc
caggaggtaagcaagcaccaggatggaaatggagaacccctgagcacaat
tctttccgttttttttttttttttcaccaaatcttctatagcatctttct
taaatgataaagttgcctttatggtgtttgataattgtagatcagttcag
gtacattttttgtttctttatcacccaagaatccatggcttattctcctt
gtatgatgttcccacatttctacatgcatttgtcctcagagcatcccact
attgggtcataatctcttgaaacgacaaatctactaaccacaacttccct
gggttagcatacaattgatgctgaaacgttgttgaaggaagtattgaaag
taactgcatgtaacctcttgtttggaaggtccagtttattaatgcaacta
tactcttaccgtattttgaagtatttttggaaatgagtgtggggaatgaa
ataattatgaaaatatcttgaaaattgcttcatattttatagcttacatc
gatgtttcctaccattatcacagtagggaaggatcctctggcaccagaaa
aagccacaaaacataatgaatagcaatttctctttagtttatgtttgttt
cactcctcataatgattgccttgacactattttcaattattatggatgtt
gaaatgcatttaatagctatcatggtaccaaatatactccacagccattt
aataagtatctaaatttatagttattatagtttgttttcctgttcctact
gaaatacacagatatgttacattatatttttcttagagagtgggattaga
gcctgaggaatggaaaaaatggccctaggatagtgtaaagcttgtttctc
cattgttgtgtctcagctatctttccttcatagtctacctctgaagctcg
ggtagctctcaaactgcacacgtcttccctgtgtaatgttcctttatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103709052_103710056
seq2: B6Ng01-147J17.b_53_1053

seq1  GGTAAGCACTAATCTATATTATTTACCAAGTATGATACCACTTTAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCACTAATCTATATTATTTACCAAGTATGATACCACTTTAGAAAA  50

seq1  GTCTACTAAGAATTGTCCAAAGTCTTCAAGGCATCCATTTTGTTTAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTAAGAATTGTCCAAAGTCTTCAAGGCATCCATTTTGTTTAATGC  100

seq1  CTCAATTCAGTAATATTGATGTATGGCTGCACCTACAGTAATTGGTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTCAGTAATATTGATGTATGGCTGCACCTACAGTAATTGGTTTAC  150

seq1  TTACCTCCTCTGGACGGTAATAGATACTTTCAAAATAATAAGTTCTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCCTCTGGACGGTAATAGATACTTTCAAAATAATAAGTTCTATTT  200

seq1  ACTGAGCTGTTTATGCACAGCATCATCAGAGCTTGTCTTCACTCTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTGTTTATGCACAGCATCATCAGAGCTTGTCTTCACTCTTTAAT  250

seq1  CTTCCCAGGCTCATTACATTTCCGTTACTGTGACCAGGCCAATTTTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGGCTCATTACATTTCCGTTACTGTGACCAGGCCAATTTTCAGA  300

seq1  TACAGAAAATTAAACCTGAAGAGGCTAAATTTCTTACTGATGGTTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAATTAAACCTGAAGAGGCTAAATTTCTTACTGATGGTTTTGTA  350

seq1  GCCCAGAGCCCTAGATGGTGAAATATAGCCAAGACTTATATTTATGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGCCCTAGATGGTGAAATATAGCCAAGACTTATATTTATGCCTG  400

seq1  GGCACAGAAGGTGAGTAATCTTTATCTTCCTCTTACACTACGAAATTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGAAGGTGAGTAATCTTTATCTTCCTCTTACACTACGAAATTGAG  450

seq1  AGTCTTAATTGCTAGGGTTTCTATAACTGAATGCAACAGACTTGGTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAATTGCTAGGGTTTCTATAACTGAATGCAACAGACTTGGTGGGT  500

seq1  TAAAAAACAGAAGGGTTTTTTATTTTATTTTATGTTTTTATGTTCCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAGAAGGGTTTTTTATTTTATTTTATGTTTTTATGTTCCTGGC  550

seq1  ATCTGGATATTCTAAGATGAAAGCACTGGCTGACTGGTGGATGCTGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGATATTCTAAGATGAAAGCACTGGCTGACTGGTGGATGCTGAAGT  600

seq1  TATTCCTTGCCTTTTAGTAAACTCCCTTCCCTTTCGATCCACACATGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTGCCTTTTAGTAAACTCCCTTCCCTTTCGATCCACACATGACA  650

seq1  AAGGTGGAGCGAGAACACTCCAAACTTTTCTGTGTATCTGCAGACTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGAGCGAGAACACTCCAAACTTTTCTGTGTATCTGCAGACTTTAG  700

seq1  CAATGATTCTGCATCATGTGTATTCTTCAACAGAGTTTTGTTTCTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATTCTGCATCATGTGTATTCTTCAACAGAGTTTTGTTTCTGTGTG  750

seq1  ATGAGCGGTCATGAAGTATCAATAGCCAGCACCCGCTAAAACAACTATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCGGTCATGAAGTATCAATAGCCAGCACCCGCTAAAACAACTATTG  800

seq1  TTTGCTGTTTCATTAAGGGTATGCTTCCTATGATTTGAAAGAGACTA-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGCTGTTTCATTAAGGGTATGCTTCCTATGATTTGAAAGAGACTATTT  850

seq1  TAGCTGGGTATAGTGGCTCACACTTGTCATCCATGTACTCATGATGCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGTATAGTGGCTCACACTTGTCATCCATGTACTCATGATGCACA  900

seq1  GGTGAAATGATTGCATGGTCTATTG-TTTGAGACCCTATTAAAGAAGGAG  948
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTGAAATGATTGCATGGTCTATTGTTTTGAGACCCTATTAAAGAAGGAG  950

seq1  AAATAGAGAGAGAATGGATGAAAGAAGAAAAGGAAGAAGGAAGGAAGAGA  998
      |||||||||||| ||||||||||| |||||||  |||  | |||||||||
seq2  AAATAGAGAGAG-ATGGATGAAAG-AGAAAAG--AGA--GGAGGAAGAGA  994

seq1  GGAAAGA  1005
      |||||||
seq2  GGAAAGA  1001

seq1: chr6_103863231_103864284
seq2: B6Ng01-147J17.g_68_1116 (reverse)

seq1  ACATAAAGGACACTGACACAGGGAAGACGTGTGCAAGTTTGAGAGCTACC  50
      ||||||||||   | ||||||||||||||||||| |||||||||||||||
seq2  ACATAAAGGAACATTACACAGGGAAGACGTGTGC-AGTTTGAGAGCTACC  49

seq1  CGAGCTCTAGAGGTAAGACTATGACAGAAAGATAGACAGAGACACACACA  100
      ||||||  |||||| |||||||||  ||||||||| | ||||||||   |
seq2  CGAGCTTCAGAGGT-AGACTATGAAGGAAAGATAG-CTGAGACACAACAA  97

seq1  TGGAGAAACAAAGCTGTACACTTATCCTAGGGCCATTTTTTTCCATTCCT  150
      ||||||||| ||||| ||||| ||||||||||||| ||||||||||||||
seq2  TGGAGAAAC-AAGCTTTACAC-TATCCTAGGGCCA-TTTTTTCCATTCCT  144

seq1  CAGGCTCTAAT-CCACTCTCTAAGAAAAATATAATGTAACATATCTGTGT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTAATCCCACTCTCTAAGAAAAATATAATGTAACATATCTGTGT  194

seq1  ATTTCAGTAGGAACAGGAAAACAAACTATAATAACTATAAATTTAGATAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTAGGAACAGGAAAACAAACTATAATAACTATAAATTTAGATAC  244

seq1  TTATTAAATGGCTGTGGAGTATATTTGGTACCATGATAGCTATTAAATGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATGGCTGTGGAGTATATTTGGTACCATGATAGCTATTAAATGC  294

seq1  ATTTCAACATCCATAATAATTGAAAATAGTGTCAAGGCAATCATTATGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACATCCATAATAATTGAAAATAGTGTCAAGGCAATCATTATGAG  344

seq1  GAGTGAAACAAACATAAACTAAAGAGAAATTGCTATTCATTATGTTTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAACAAACATAAACTAAAGAGAAATTGCTATTCATTATGTTTTGT  394

seq1  GGCTTTTTCTGGTGCCAGAGGATCCTTCCCTACTGTGATAATGGTAGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTCTGGTGCCAGAGGATCCTTCCCTACTGTGATAATGGTAGGAA  444

seq1  ACATCGATGTAAGCTATAAAATATGAAGCAATTTTCAAGATATTTTCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGATGTAAGCTATAAAATATGAAGCAATTTTCAAGATATTTTCATA  494

seq1  ATTATTTCATTCCCCACACTCATTTCCAAAAATACTTCAAAATACGGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCATTCCCCACACTCATTTCCAAAAATACTTCAAAATACGGTAA  544

seq1  GAGTATAGTTGCATTAATAAACTGGACCTTCCAAACAAGAGGTTACATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAGTTGCATTAATAAACTGGACCTTCCAAACAAGAGGTTACATGC  594

seq1  AGTTACTTTCAATACTTCCTTCAACAACGTTTCAGCATCAATTGTATGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTCAATACTTCCTTCAACAACGTTTCAGCATCAATTGTATGCT  644

seq1  AACCCAGGGAAGTTGTGGTTAGTAGATTTGTCGTTTCAAGAGATTATGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGGAAGTTGTGGTTAGTAGATTTGTCGTTTCAAGAGATTATGAC  694

seq1  CCAATAGTGGGATGCTCTGAGGACAAATGCATGTAGAAATGTGGGAACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGTGGGATGCTCTGAGGACAAATGCATGTAGAAATGTGGGAACAT  744

seq1  CATACAAGGAGAATAAGCCATGGATTCTTGGGTGATAAAGAAACAAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAGGAGAATAAGCCATGGATTCTTGGGTGATAAAGAAACAAAAAA  794

seq1  TGTACCTGAACTGATCTACAATTATCAAACACCATAAAGGCAACTTTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGAACTGATCTACAATTATCAAACACCATAAAGGCAACTTTATC  844

seq1  ATTTAAGAAAGATGCTATAGAAGATTTGGTGAAAAAAAAAAAAAAAACGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAAAGATGCTATAGAAGATTTGGTGAAAAAAAAAAAAAAAACGG  894

seq1  AAAGAATTGTGCTCAGGGGTTCTCCATTTCCATCCTGGTGCTTGCTTACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTGTGCTCAGGGGTTCTCCATTTCCATCCTGGTGCTTGCTTACC  944

seq1  TCCTGGCAGACTTCTTTGACCTAGCTGACTGCGATGTGGTGGCTCATGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAGACTTCTTTGACCTAGCTGACTGCGATGTGGTGGCTCATGGC  994

seq1  CACTTCAGATTTGCTGTAGTATCTGTATCCACGGAAAGTAAATAGCTCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGATTTGCTGTAGTATCTGTATCCACGGAAAGTAAATAGCTCTG  1044

seq1  AATTC  1054
      |||||
seq2  AATTC  1049