BAC Information

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BAC

Clone NameB6Ng01-147P19
Chromosome6 (Build37)
Map Location 3,465,671 - 3,586,642
singlet/doubletdoublet
Overlap geneCcdc132
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l, AI987662
Downstream geneCalcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2, Casd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147P19.bB6Ng01-147P19.g
ACCDH944712DH944713
length1,1171,163
definitionDH944712|Mus musculus domesticus DNA, BAC clone: B6Ng01-147P19, 5' end.DH944713|Mus musculus domesticus DNA, BAC clone: B6Ng01-147P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,465,671 - 3,466,786)(3,585,466 - 3,586,642)
sequence
gaattctcaaagaactaattaaaaatagcattttttgttttgctgttgtt
aagactgggtctttggtttttcttagagacttactggatagctcaggctg
accttaacctcaagagcttcctgcctcagcctcccaaattttagaattat
cagcatttgtaccatacctatcttagtgtagtatcattttgattagccag
tgtgggaagaagtagatatctaagttgagatttttctagttaaccaaggg
attgtcaaataatacaatgaaattgcatagtgtaaagacagtaatattag
ggataggcatctgtctgtcacgtttctttagacgaaatgcatggaagccc
attctgtgctttgggaacaaagactttgtttggtacacagtcagaattgc
atcgttcatacactttggaggagcatcatagaatacaggatgcaacttgt
aaacctgttcttgagctggatgcttagctcccctttctctgtggttccta
ccagagtcagatgctcgctgcacagttccagtactggctgtgttccaggg
gtcattgagacggtgttttgttatgtgcagtcagacagattttagaatat
tattgatgtgataaaatgtgagtctgtgatgtgtccttatgatagatcta
ggtagttgcttgcatgtcaattaaacatgtaaattcttttagccttcctg
gcatacaaacagttcaaaatacaatctgatttcttttttcttcctttcag
ttgaaaagcagtgttttagtgttttgtctattttctagttttctggtttc
taagtagtttgtgttcttggtcagaatggttctcagaaaggtatgtgact
gaaaggtacaagatcatttgtttctatgcagatggaatcttaacacttta
tatgtgctgtaattaagactttaattttttttttttttgtctttttattt
tttaaggaggaattcaggagcttcgagaacagcccagcgacctcagctga
gcaagagttgattatagcatggaacaagtctatttttctggggatccatt
ttgatattggttaaaatgagctgaggtaaaagggaacctttgattaaaac
acatctaaggtcatttc

gaattccttccattttgcctgcacatggtaatgaggttgacagaactgaa
tatgttgcttatggtaggaaaaacagatacactgtctttcaaaactgatg
aaatcccttgggctataatttttaatgccataaaccataagtatatatct
accatttaagatctgaatataatcgtctatctactagtaccaccaattaa
gtttctgttccctaagtttatccctctacatacttccataatgtttgtat
tatttcaatattcttagtgtttcgttttttaatctgaacatgatgtaaat
tttgcaactgaacattaaaaagtatttttaaaaccaaaattctccaggat
tctctatttgtaatcactcccatctagaaaatgccaggctaaacctattt
acataataaattcacaggattgcaaggcattataattaaccttttgcttt
gacaacacatcaaaataacaaagcatttacaagctacattgttttcaaat
gtatcttaccgggggaaaaaatatgttctcaaacgtatcaagtcaaaggg
tgaattttctcttcttataatatgaaccatagaagtacacataattttag
gacattcaggaaatgtgaaagtaagtaataaaaataatttctgaaaaaaa
taatgagttgaaaaatgtattctttataatttagatttaaaaatatataa
aaataagaaagtaagcctcagtggaaggaagattgagttcaggccaacaa
aataaaatgtttttactccgaaagtgaagaagcactccatccttaaggaa
gtctgagtaactacacacagaaactatcaaaacaagaagttacattgtaa
caaggaaaaactcccatttttcttgttggcttttaaacatttgtcaatta
ctccttttgtcttatgggcatattgtactcacagtacatgatagcaaagg
aaacctttcctgagataaaatgccaattaatgattgtctaaatactctga
aatggatttctttttaatgaccactgtttaaaccctgagaacaaacagca
accagattcatgccacttacctgaacattgtctcatttttcatctagttt
ctggagactatttctgtgttcattacaatggtagatcagtaaattagacg
ttaacctaattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_3465671_3466786
seq2: B6Ng01-147P19.b_49_1165

seq1  GAATTCTCAAAGAACTAATTAAAAATAGCATTTTTTGTTTTGCTGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAGAACTAATTAAAAATAGCATTTTTTGTTTTGCTGTTGTT  50

seq1  AAGACTGGGTCTTTGGTTTTTCTTAGAGACTTACTGGATAGCTCAGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGGTCTTTGGTTTTTCTTAGAGACTTACTGGATAGCTCAGGCTG  100

seq1  ACCTTAACCTCAAGAGCTTCCTGCCTCAGCCTCCCAAATTTTAGAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAACCTCAAGAGCTTCCTGCCTCAGCCTCCCAAATTTTAGAATTAT  150

seq1  CAGCATTTGTACCATACCTATCTTAGTGTAGTATCATTTTGATTAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTGTACCATACCTATCTTAGTGTAGTATCATTTTGATTAGCCAG  200

seq1  TGTGGGAAGAAGTAGATATCTAAGTTGAGATTTTTCTAGTTAACCAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAGAAGTAGATATCTAAGTTGAGATTTTTCTAGTTAACCAAGGG  250

seq1  ATTGTCAAATAATACAATGAAATTGCATAGTGTAAAGACAGTAATATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAAATAATACAATGAAATTGCATAGTGTAAAGACAGTAATATTAG  300

seq1  GGATAGGCATCTGTCTGTCACGTTTCTTTAGACGAAATGCATGGAAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGCATCTGTCTGTCACGTTTCTTTAGACGAAATGCATGGAAGCCC  350

seq1  ATTCTGTGCTTTGGGAACAAAGACTTTGTTTGGTACACAGTCAGAATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGCTTTGGGAACAAAGACTTTGTTTGGTACACAGTCAGAATTGC  400

seq1  ATCGTTCATACACTTTGGAGGAGCATCATAGAATACAGGATGCAACTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTCATACACTTTGGAGGAGCATCATAGAATACAGGATGCAACTTGT  450

seq1  AAACCTGTTCTTGAGCTGGATGCTTAGCTCCCCTTTCTCTGTGGTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTTCTTGAGCTGGATGCTTAGCTCCCCTTTCTCTGTGGTTCCTA  500

seq1  CCAGAGTCAGATGCTCGCTGCACAGTTCCAGTACTGGCTGTGTTCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCAGATGCTCGCTGCACAGTTCCAGTACTGGCTGTGTTCCAGGG  550

seq1  GTCATTGAGACGGTGTTTTGTTATGTGCAGTCAGACAGATTTTAGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGAGACGGTGTTTTGTTATGTGCAGTCAGACAGATTTTAGAATAT  600

seq1  TATTGATGTGATAAAATGTGAGTCTGTGATGTGTCCTTATGATAGATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGTGATAAAATGTGAGTCTGTGATGTGTCCTTATGATAGATCTA  650

seq1  GGTAGTTGCTTGCATGTCAATTAAACATGTAAATTCTTTTAGCCTTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTGCTTGCATGTCAATTAAACATGTAAATTCTTTTAGCCTTCCTG  700

seq1  GCATACAAACAGTTCAAAATACAATCTGATTTCTTTTTTCTTCCTTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAAACAGTTCAAAATACAATCTGATTTCTTTTTTCTTCCTTTCAG  750

seq1  TTGAAAAGCAGTGTTTTAGTG-TTTGTCTATTTTCTAGTTTTCTGGTTTC  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGAAAAGCAGTGTTTTAGTGTTTTGTCTATTTTCTAGTTTTCTGGTTTC  800

seq1  TAAGTAGTTTGTGTTCTTGGTCAGAATGGTTCTCAG-AAGGTATGTGACT  848
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAGTAGTTTGTGTTCTTGGTCAGAATGGTTCTCAGAAAGGTATGTGACT  850

seq1  G-AAGGTACAAGATCATTTGTTTCTATGCAGATGGAATCTTAACAC-TTA  896
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAAGGTACAAGATCATTTGTTTCTATGCAGATGGAATCTTAACACTTTA  900

seq1  TATGTGCTGTAATTAAGACTTTAA-TTTTTTTTTTTTTGTCTTTTTATTT  945
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATGTGCTGTAATTAAGACTTTAATTTTTTTTTTTTTTGTCTTTTTATTT  950

seq1  TTTAAGGAGGAATTCAGGGAGCTTCGAGAACAGCCAAGCGACCCTCAAGC  995
      |||||||||||||||| |||||||||||||||||| ||||| |||| |||
seq2  TTTAAGGAGGAATTCA-GGAGCTTCGAGAACAGCCCAGCGA-CCTC-AGC  997

seq1  TGAGCAAGAGTTGATTAATAGCATTGAACAAGTCTATTTTTCTGCGGATC  1045
      |||||||||||||||| ||||||| ||||||||||||||||||| |||||
seq2  TGAGCAAGAGTTGATT-ATAGCATGGAACAAGTCTATTTTTCTGGGGATC  1046

seq1  CA-TTTGATATTGTTAAATATGAGCTGGAGGTAAAAGGGAA-CTTTGATT  1093
      || |||||||||| | || ||||||| |||||||||||||| ||||||||
seq2  CATTTTGATATTGGTTAAAATGAGCT-GAGGTAAAAGGGAACCTTTGATT  1095

seq1  AAAACACATCTAAAGCTCATTTC  1116
      ||||||||||| ||| |||||||
seq2  AAAACACATCT-AAGGTCATTTC  1117


seq1: chr6_3585466_3586642
seq2: B6Ng01-147P19.g_72_1234 (reverse)

seq1  ATAATTAGTGTTAATTTTCTTAATTTTAATTGATCTAACATTTTGTAATG  50
      |||||||| |||||  |   ||||||  | ||||||| ||  ||||||||
seq2  ATAATTAG-GTTAACGT--CTAATTT--ACTGATCTACCA--TTGTAATG  43

seq1  AACACAG-AATAGTCT-CAGAAAATTTAGATGAAAAATGAGACAATGTTT  98
      ||||||| |||||||| ||||||   ||||||||||||||||||||| ||
seq2  AACACAGAAATAGTCTCCAGAAA--CTAGATGAAAAATGAGACAATG-TT  90

seq1  CAGTTAAGTGGCATGAATCTGGTTTGCTTGTTTGTTCTCAGGGTTTAAAC  148
      ||| |||||||||||||||||| |||| ||||||||||||||||||||||
seq2  CAGGTAAGTGGCATGAATCTGG-TTGC-TGTTTGTTCTCAGGGTTTAAAC  138

seq1  AGTGGTCATTAAAAAAGAAATCCATTTCAGAGGTATTTAGACAATCATTT  198
      |||||||||| |||||||||||||||||||| ||||||||||||||| ||
seq2  AGTGGTCATT-AAAAAGAAATCCATTTCAGA-GTATTTAGACAATCA-TT  185

seq1  AATTGGCATTTTATCTCAGG-AAGGTTTCCTTTGCTATCATGTACTGTGA  247
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTGGCATTTTATCTCAGGAAAGGTTTCCTTTGCTATCATGTACTGTGA  235

seq1  GTAC-ATATGCCCATTAAGACAAAAGGAGTAATTGACAAATGTTTTAAAA  296
      |||| ||||||||| ||||||||||||||||||||||||||| |||||||
seq2  GTACAATATGCCCA-TAAGACAAAAGGAGTAATTGACAAATG-TTTAAAA  283

seq1  GCCAACAAGGAAAAATTGGAGTTTTTCCTTGTTACAATGTAACTTCTTGT  346
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  GCCAACAA-GAAAAATGGGAGTTTTTCCTTGTTACAATGTAACTTCTTGT  332

seq1  TTTGATAGTTTCTGTGTGTAGTTACTCAGACTTCCTTAAGGATGGAGTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGTTTCTGTGTGTAGTTACTCAGACTTCCTTAAGGATGGAGTGC  382

seq1  TTCTTCACTTTCGGAGTAAAAACATTTTATTTTGTTGGCCTGAACTCAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACTTTCGGAGTAAAAACATTTTATTTTGTTGGCCTGAACTCAAT  432

seq1  CTTCCTTCCACTGAGGCTTACTTTCTTATTTTTATATATTTTTAAATCTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCACTGAGGCTTACTTTCTTATTTTTATATATTTTTAAATCTA  482

seq1  AATTATAAAGAATACATTTTTCAACTCATTATTTTTTTCAGAAATTATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAGAATACATTTTTCAACTCATTATTTTTTTCAGAAATTATTT  532

seq1  TTATTACTTACTTTCACATTTCCTGAATGTCCTAAAATTATGTGTACTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTTACTTTCACATTTCCTGAATGTCCTAAAATTATGTGTACTTC  582

seq1  TATGGTTCATATTATAAGAAGAGAAAATTCACCCTTTGACTTGATACGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTCATATTATAAGAAGAGAAAATTCACCCTTTGACTTGATACGTT  632

seq1  TGAGAACATATTTTTTCCCCCGGTAAGATACATTTGAAAACAATGTAGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACATATTTTTTCCCCCGGTAAGATACATTTGAAAACAATGTAGCT  682

seq1  TGTAAATGCTTTGTTATTTTGATGTGTTGTCAAAGCAAAAGGTTAATTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGCTTTGTTATTTTGATGTGTTGTCAAAGCAAAAGGTTAATTAT  732

seq1  AATGCCTTGCAATCCTGTGAATTTATTATGTAAATAGGTTTAGCCTGGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTGCAATCCTGTGAATTTATTATGTAAATAGGTTTAGCCTGGCA  782

seq1  TTTTCTAGATGGGAGTGATTACAAATAGAGAATCCTGGAGAATTTTGGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGATGGGAGTGATTACAAATAGAGAATCCTGGAGAATTTTGGTT  832

seq1  TTAAAAATACTTTTTAATGTTCAGTTGCAAAATTTACATCATGTTCAGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATACTTTTTAATGTTCAGTTGCAAAATTTACATCATGTTCAGAT  882

seq1  TAAAAAACGAAACACTAAGAATATTGAAATAATACAAACATTATGGAAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACGAAACACTAAGAATATTGAAATAATACAAACATTATGGAAGT  932

seq1  ATGTAGAGGGATAAACTTAGGGAACAGAAACTTAATTGGTGGTACTAGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGGGATAAACTTAGGGAACAGAAACTTAATTGGTGGTACTAGTA  982

seq1  GATAGACGATTATATTCAGATCTTAAATGGTAGATATATACTTATGGTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACGATTATATTCAGATCTTAAATGGTAGATATATACTTATGGTTT  1032

seq1  ATGGCATTAAAAATTATAGCCCAAGGGATTTCATCAGTTTTGAAAGACAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTAAAAATTATAGCCCAAGGGATTTCATCAGTTTTGAAAGACAG  1082

seq1  TGTATCTGTTTTTCCTACCATAAGCAACATATTCAGTTCTGTCAACCTCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGTTTTTCCTACCATAAGCAACATATTCAGTTCTGTCAACCTCA  1132

seq1  TTACCATGTGCAGGCAAAATGGAAGGAATTC  1177
      |||||||||||||||||||||||||||||||
seq2  TTACCATGTGCAGGCAAAATGGAAGGAATTC  1163


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