BAC Information

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BAC

Clone NameB6Ng01-148C15
Chromosome6 (Build37)
Map Location 65,982,890 - 66,118,357
singlet/doubletdoublet
Overlap genenone
Upstream geneSmarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1
Downstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148C15.bB6Ng01-148C15.g
ACCDH944848DH944849
length8911,140
definitionDH944848|Mus musculus domesticus DNA, BAC clone: B6Ng01-148C15, 5' end.DH944849|Mus musculus domesticus DNA, BAC clone: B6Ng01-148C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,982,890 - 65,983,781)(66,117,234 - 66,118,357)
sequence
gaattcctccaagatctgtgctttagttcatcctctagattctgccttga
cttccctcagtgctggactatgacgtgagagttgtaaaatagaataagcc
ctgtatcgctcagttgtgtgtagtcatggtgtttatcatagcaacacaaa
tcaaagtatgacaatcgggattactaatcatatatcaatattgtttactc
ttgaggaatctctctgtcatttcccctcacagctttactaatttccattg
ccaccaagagtgttcaatggttccttctctctatagtctcctgactttga
ttgccattaatctttttgttaacaactctcttactaggctgaatgacatg
gcctaggttagaggcagcctggtctccttgctgatagatatgctgttccc
atggtcttcccttcttcatattcacagacaaaacaatgggaatccttttt
gtctttctgtttcctttggccatttctaacatgtgaggaaagtttgaaga
ctccagttgtaaacttatagtgcatgccttcccatccactctgccactgg
cctaaaataagcatacatttgactttagtactccaaaaccattagacatt
gctcagtgtctgtttacaacacagtagtctaaagtcagaaatgcccatct
tggaattctgtaccattttctaggtatatgttctgaggcaaatttcaata
tatttataaactcaatatctaagattcccagaatatttctgaaattgaga
ttttgaatgaaaaaatatacaaagcctagaatataagaaagatcaaccta
ctactcctatacccatttcttctgtttttctgtgctaacttgtatctgat
tataccaaatatacttagcatattggattataattatgtaa
gaattcttcacatgttcatatttagcaatgctgctttattcaggtagaag
aaggtacctgcaggcacagcagcaggagagctgggaagccctagagtaac
aaaaaacaatgagaagctgtcctatcatggagacagccaagttttgataa
ctgatgtttttcttcaggattctttagtcttctaccagcttccacaacaa
tagaaaacatgacagcctggtaaagcatcaggcaaggacaatgttaatga
ttttcagaggggtacaattaaatatgggtaccagatgaggtatctgtaat
aaagggccactagaaaaatattagagcagggataggtgagatgcctgggg
tgacctgaattccatttctggaagctacagggtaggaggagaaaatgcat
tcctgctacttgtcttctgaccttcacatgtgtgctgcagcatgcacaca
gatacaagtaaacaaacaaaaacaaataaatacatgcaataagaaattac
aatgttatctttataaaacaaggcatatatgtgaatatatttaaaagcat
atattcagaacattgcacttgtttatataaggaagactcatcaaaatcat
ttatactcacaattttaagatttttatcttacaaccatagaaatcagaaa
gtatatggaagttcatctctgtgttgtgacccatgctcaggaaaaaatat
acctggaatccatgagaaaccttcatgttatatggaagtagtagacaaac
aactaaaccaattatgtttcctctataatgtaccctcaccagggtgaaaa
atcagtaatggtctcatgaaaaaaagaaagaaatagacagcatccgacaa
atagatagactcacatatagagacagtgcacccaaagcagagcagtaaaa
acaatagtggaatgttataaatcagggctgtggcagcactgttcagaggg
aggaagcagtacgattcagcagtaggactggggagagaaagatcagaaag
gggtgatccattctctcagagttgtgatgaagggaagtatccaaacatgg
agggttataaccctggagagtctatggaaacccacatgatagaattggaa
cccagtctccctttcattggaatgcccaccaattgaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_65982890_65983781
seq2: B6Ng01-148C15.b_44_934

seq1  GAATTCCTCCAAGATCTGTGCTTTAGTTCATCCTCTAGATTCTGCCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCAAGATCTGTGCTTTAGTTCATCCTCTAGATTCTGCCTTGA  50

seq1  CTTCCCTCAGTGCTGGACTATGACGTGAGAGTTGTAAAATAGAATAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCAGTGCTGGACTATGACGTGAGAGTTGTAAAATAGAATAAGCC  100

seq1  CTGTATCGCTCAGTTGTGTGTAGTCATGGTGTTTATCATAGCAACACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCGCTCAGTTGTGTGTAGTCATGGTGTTTATCATAGCAACACAAA  150

seq1  TCAAAGTATGACAATCGGGATTACTAATCATATATCAATATTGTTTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTATGACAATCGGGATTACTAATCATATATCAATATTGTTTACTC  200

seq1  TTGAGGAATCTCTCTGTCATTTCCCCTCACAGCTTTACTAATTTCCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAATCTCTCTGTCATTTCCCCTCACAGCTTTACTAATTTCCATTG  250

seq1  CCACCAAGAGTGTTCAATGGTTCCTTCTCTCTATAGTCTCCTGACTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGAGTGTTCAATGGTTCCTTCTCTCTATAGTCTCCTGACTTTGA  300

seq1  TTGCCATTAATCTTTTTGTTAACAACTCTCTTACTAGGCTGAATGACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTAATCTTTTTGTTAACAACTCTCTTACTAGGCTGAATGACATG  350

seq1  GCCTAGGTTAGAGGCAGCCTGGTCTCCTTGCTGATAGATATGCTGTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGTTAGAGGCAGCCTGGTCTCCTTGCTGATAGATATGCTGTTCCC  400

seq1  ATGGTCTTCCCTTCTTCATATTCACAGACAAAACAATGGGAATCCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTTCCCTTCTTCATATTCACAGACAAAACAATGGGAATCCTTTTT  450

seq1  GTCTTTCTGTTTCCTTTGGCCATTTCTAACATGTGAGGAAAGTTTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTGTTTCCTTTGGCCATTTCTAACATGTGAGGAAAGTTTGAAGA  500

seq1  CTCCAGTTGTAAACTTATAGTGCATGCCTTCCCATCCACTCTGCCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTGTAAACTTATAGTGCATGCCTTCCCATCCACTCTGCCACTGG  550

seq1  CCTAAAATAAGCATACATTTGACTTTAGTACTCCAAAACCATTAGACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATAAGCATACATTTGACTTTAGTACTCCAAAACCATTAGACATT  600

seq1  GCTCAGTGTCTGTTTACAACACAGTAGTCTAAAGTCAGAAATGCCCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGTCTGTTTACAACACAGTAGTCTAAAGTCAGAAATGCCCATCT  650

seq1  TGGAATTCTGTACCATTTTCTAGGTATATGTTCTGAGGCAAATTTCAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCTGTACCATTTTCTAGGTATATGTTCTGAGGCAAATTTCAATA  700

seq1  TATTTATAAACTCAATATCTAAGATTCCCAGAATATTTCTGAAATTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAAACTCAATATCTAAGATTCCCAGAATATTTCTGAAATTGAGA  750

seq1  TTTTGAATGAAAAAATATACAAAGCCTAGAATATAAGAAAGATTCAACCT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTGAATGAAAAAATATACAAAGCCTAGAATATAAGAAAGA-TCAACCT  799

seq1  ACTACTCCTATACCCATTTCTTCTGTTTTTCTGTGCTAACTTGTATCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCCTATACCCATTTCTTCTGTTTTTCTGTGCTAACTTGTATCTGA  849

seq1  TTATACCAAATATACTTAGCATATTGGATTATAATTATGTAA  892
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCAAATATACTTAGCATATTGGATTATAATTATGTAA  891

seq1: chr6_66117234_66118357
seq2: B6Ng01-148C15.g_67_1206 (reverse)

seq1  ATTTTCA---------------AATGAAAGGAAGACATGGTGTTCCATGT  35
      |||||||               ||||||||| |||| ||| ||||||  |
seq2  ATTTTCAATTGGTGGGCATTCCAATGAAAGGGAGAC-TGG-GTTCCAATT  48

seq1  CTATCATGT-GGTTTCCATTGACTCTTCAGGGTTTATACCCTCCATGTTT  84
      ||||||||| ||||||||| |||||| |||||||   |||||||||||||
seq2  CTATCATGTGGGTTTCCATAGACTCTCCAGGGTTATAACCCTCCATGTTT  98

seq1  GGATACTTCCCTTCATCAC-ACTCTGAGAG-ATGGATCACCCCTTTCTGA  132
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  GGATACTTCCCTTCATCACAACTCTGAGAGAATGGATCACCCCTTTCTGA  148

seq1  TCTTTCTCTTCCCAGTCCTACTGCTGAATCGTACTGCTTCCTCCCTCTGA  182
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTCCCCAGTCCTACTGCTGAATCGTACTGCTTCCTCCCTCTGA  198

seq1  ACAGTGCTGCCACAGCCCTGATTTATAACATTCCACTATTGTTTTTACTG  232
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTGCCACAGCCCTGATTTATAACATTCCACTATTGTTTTTACTG  248

seq1  CTCTGCTTTGGGTGCACTGTCTCTATATGTGAGTCTATCTATTTGTCGGA  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTGGGTGCACTGTCTCTATATGTGAGTCTATCTATTTGTCGGA  298

seq1  TGCTGTCTATTTCTTTCTTTTTTTCATGAGACCATTACTGATTTTTCACC  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTATTTCTTTCTTTTTTTCATGAGACCATTACTGATTTTTCACC  348

seq1  CTGGTGAGGGTACATTATAGAGGAAACATAATTGGTTTAGTTGTTTGTCT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGGGTACATTATAGAGGAAACATAATTGGTTTAGTTGTTTGTCT  398

seq1  ACTACTTCCATATAACATGAAGGTTTCTCATGGATTCCAGGTATATTTTT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCCATATAACATGAAGGTTTCTCATGGATTCCAGGTATATTTTT  448

seq1  TCCTGAGCATGGGTCACAACACAGAGATGAACTTCCATATACTTTCTGAT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCATGGGTCACAACACAGAGATGAACTTCCATATACTTTCTGAT  498

seq1  TTCTATGGTTGTAAGATAAAAATCTTAAAATTGTGAGTATAAATGATTTT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGTTGTAAGATAAAAATCTTAAAATTGTGAGTATAAATGATTTT  548

seq1  GATGAGTCTTCCTTATATAAACAAGTGCAATGTTCTGAATATATGCTTTT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTCTTCCTTATATAAACAAGTGCAATGTTCTGAATATATGCTTTT  598

seq1  AAATATATTCACATATATGCCTTGTTTTATAAAGATAACATTGTAATTTC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTCACATATATGCCTTGTTTTATAAAGATAACATTGTAATTTC  648

seq1  TTATTGCATGTATTTATTTGTTTTTGTTTGTTTACTTGTATCTGTGTGCA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCATGTATTTATTTGTTTTTGTTTGTTTACTTGTATCTGTGTGCA  698

seq1  TGCTGCAGCACACATGTGAAGGTCAGAAGACAAGTAGCAGGAATGCATTT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGCACACATGTGAAGGTCAGAAGACAAGTAGCAGGAATGCATTT  748

seq1  TCTCCTCCTACCCTGTAGCTTCCAGAAATGGAATTCAGGTCACCCCAGGC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCTACCCTGTAGCTTCCAGAAATGGAATTCAGGTCACCCCAGGC  798

seq1  ATCTCACCTATCCCTGCTCTAATATTTTTCTAGTGGCCCTTTATTACAGA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCTATCCCTGCTCTAATATTTTTCTAGTGGCCCTTTATTACAGA  848

seq1  TACCTCATCTGGTACCCATATTTAATTGTACCCCTCTGAAAATCATTAAC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATCTGGTACCCATATTTAATTGTACCCCTCTGAAAATCATTAAC  898

seq1  ATTGTCCTTGCCTGATGCTTTACCAGGCTGTCATGTTTTCTATTGTTGTG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTTGCCTGATGCTTTACCAGGCTGTCATGTTTTCTATTGTTGTG  948

seq1  GAAGCTGGTAGAAGACTAAAGAATCCTGAAGAAAAACATCAGTTATCAAA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGTAGAAGACTAAAGAATCCTGAAGAAAAACATCAGTTATCAAA  998

seq1  ACTTGGCTGTCTCCATGATAGGACAGCTTCTCATTGTTTTTTGTTACTCT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCTGTCTCCATGATAGGACAGCTTCTCATTGTTTTTTGTTACTCT  1048

seq1  AGGGCTTCCCAGCTCTCCTGCTGCTGTGCCTGCAGGTACCTTCTTCTACC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCCCAGCTCTCCTGCTGCTGTGCCTGCAGGTACCTTCTTCTACC  1098

seq1  TGAATAAAGCAGCATTGCTAAATATGAACATGTGAAGAATTC  1124
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAGCAGCATTGCTAAATATGAACATGTGAAGAATTC  1140