BAC Information

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BAC

Clone NameB6Ng01-148F02
Chromosome6 (Build37)
Map Location 77,284,101 - 77,383,447
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLOC668153, EG668155, LOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148F02.bB6Ng01-148F02.g
ACCDH944965DH944966
length1,1931,035
definitionDH944965|Mus musculus domesticus DNA, BAC clone: B6Ng01-148F02, 5' end.DH944966|Mus musculus domesticus DNA, BAC clone: B6Ng01-148F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,382,250 - 77,383,447)(77,284,101 - 77,285,031)
sequence
gaattcttcagcggtaggtgatccacagccatgggacttcctagagtgtt
ctttgttttccaccaaagcacagctctgtagatgccatttggctggcctg
ccaatcaggggaattttgcacagatctctctgcacctttcatctgtgcta
catttgctttttttttccccgtgtcctgaaatcattctcagaagcacagg
aaaatttgctattgtgtttcaagtgttcattgtcatatgggcatgcagtt
cttatgttgcttcagagagaaagtgtcttgatgtacccactatggtgctt
agtctaaggaattatagatacttggtgcttgatatgaaaatataggtgaa
gtaggtcagcttgtgatctgaactttagtttcacagaccaggtggttatt
caaaacatcccttccaccattggtggaaacaaaaagatttcagcacaaat
tggaaccccagagatattattgttattggacttgccaggcaatccataac
tcttccttgagttttctcatagaatacattggataaatatcccacacaca
agcacacaaatcaacacattccttgttccctcaggtgtcacattatatct
ggtttcttgtttctctgtttttgatgagtttatgggacttctgattttaa
tatctgattagactctagcaaatgataaggaagaaaatatccaagtgatt
tttttttctttttaaatatatagctaagtgctagcaatttggcttattag
gcagagtgcctgcctagcatgcacaaagtcctgggttcaatacccagcac
tgcataaatcagaaccagtgatgcatatctctaaatcgttgcactcgtga
gggggaaaggggaaaatcagaagtctgcagcaatttcttgggcaacattg
tgagtctgaggctagctcttgatacatcagatcccaggagaccttaatga
tgctgatttccaccccatcttgtcttaacttattgacagcacaacaaagt
agtctgaaatgcccattgtgctgcctttccctttcagatggcattcacca
tgactttccaaagcgccttcgtgactgttcgatgatagttccatatttgt
caaataggttcttgtgagccaagttggataactccaaacggttgacactg
gttatatggtttaactggccaaaccacttgctgactcaccgag
gaattctcctgtatgggggcatataatcttcccaaggccaagggcctctc
ctcccattgatggcctactaggccattctctgctacatatacaactagaa
acacaagctccaggtgggggttgggtactggttagttcataatgtttttc
cacctatagggttgcagaaccctttagctccttgggtactttctctagct
ccttcattggggaccctgtgtttcatccaatagataactgtgagcatcca
cttctgtatttgccaggcacttgcatagcctcacaagagacagctatatc
agggttctgtcagcaaaatcttgctggcatatgcaatagactctcggttt
ggtggccgtttatgggatggatctctgggtggggcagtccctggatggtc
cttccttctgtctcagctttgtttttgtaactccttccatgggtattttg
ttttgcattctaagaaggaacgaagtatccacactttggttttccttctt
cttgactttcatgtggtttgcaaattgtatcttgggaagtctaagtttct
gggctaatatccactcatcagtgagtgcatatcatgtatggtttttttgt
gattgggctgttctttcttcttgactacttgaagtttgcctttactgctg
gtactaaccagtattaccacaagcaatcatgccagtctctgtgaaaccat
agaaggatgtaatattttattttttttaaattttaattcctgttaattta
ggaagcaacaggaaaagcaaaatattgcaatataacatgacacataagtc
tgtctctggcttaaaatttttccaccttaagttggtgtgagacagacaca
ctgtcagtagaaagtggaactgggatttttggtgttttgctgagccatta
atataggacattatgctgcttgtctaatcaaacagtattgataaatatgt
atatatttcaatccttagataaaggacacctttgtttattgtacgatttt
ccaatgatacgtaatacttctgaaaggatttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77382250_77383447
seq2: B6Ng01-148F02.b_48_1240 (reverse)

seq1  CTCGGTGAGTCATAGCAAGATGGTTTGGCAGATTAAAACCATAATACACA  50
      |||||||||||  |||||| |||||||||  | | ||||||| |||  ||
seq2  CTCGGTGAGTC--AGCAAG-TGGTTTGGC-CAGTTAAACCAT-ATAACCA  45

seq1  GTGTCAACTGTTTTGATGTTAT-CAACTTGGCTCACAAAGAACTTATTTT  99
      |||||||| |||| || ||||| ||||||||||||| |||||| || |||
seq2  GTGTCAACCGTTTGGA-GTTATCCAACTTGGCTCAC-AAGAACCTA-TTT  92

seq1  GAC-AATATGGGACTATCATCGAACAGTCACGAA-GCGCTTTGGAAAGTT  147
      ||| ||||||| |||||||||||||||||||||| ||||||||||||| |
seq2  GACAAATATGGAACTATCATCGAACAGTCACGAAGGCGCTTTGGAAAG-T  141

seq1  CATGGTGAATGCCATCTGAAAGGGAAAGGCAGCACAATGGGCATTTCAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATGGTGAATGCCATCTGAAAGGGAAAGGCAGCACAATGGGCATTTC-AG  190

seq1  ACTACTTTGTTGTGCTGTCAATAGGTTAAGACAGGATGGGGTGGAAATCA  247
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  ACTACTTTGTTGTGCTGTCAATAAGTTAAGACAAGATGGGGTGGAAATCA  240

seq1  GCATCATTTAAGGTCTCCTGGGATCTGATGTATCAAGAGCTAGCCTCAGA  297
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCA-TTAAGGTCTCCTGGGATCTGATGTATCAAGAGCTAGCCTCAGA  289

seq1  CTCACAATGTTG-CCAAG-AATTGCTGCAGACTTCTGATTTTCCCCTTTC  345
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  CTCACAATGTTGCCCAAGAAATTGCTGCAGACTTCTGATTTTCCCCTTTC  339

seq1  CCCCTCACGAGTGCAACGA-TTAGAGATATGCATCACTGGTTCTGATTTA  394
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCCTCACGAGTGCAACGATTTAGAGATATGCATCACTGGTTCTGATTTA  389

seq1  TGCAGTGCTGGGTATTGAACCCAGGACTTTGTGCATGCTAGGCAGGCACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGCTGGGTATTGAACCCAGGACTTTGTGCATGCTAGGCAGGCACT  439

seq1  CTGCCTAATAAGCCAAATTGCTAGCACTTAGCTATATATTTAAAAAGAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAATAAGCCAAATTGCTAGCACTTAGCTATATATTTAAAAAGAAA  489

seq1  AAAAAATCACTTGGATATTTTCTTCCTTATCATTTGCTAGAGTCTAATCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCACTTGGATATTTTCTTCCTTATCATTTGCTAGAGTCTAATCA  539

seq1  GATATTAAAATCAGAAGTCCCATAAACTCATCAAAAACAGAGAAACAAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAAATCAGAAGTCCCATAAACTCATCAAAAACAGAGAAACAAGA  589

seq1  AACCAGATATAATGTGACACCTGAGGGAACAAGGAATGTGTTGATTTGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATATAATGTGACACCTGAGGGAACAAGGAATGTGTTGATTTGTG  639

seq1  TGCTTGTGTGTGGGATATTTATCCAATGTATTCTATGAGAAAACTCAAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGTGTGGGATATTTATCCAATGTATTCTATGAGAAAACTCAAGG  689

seq1  AAGAGTTATGGATTGCCTGGCAAGTCCAATAACAATAATATCTCTGGGGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTATGGATTGCCTGGCAAGTCCAATAACAATAATATCTCTGGGGT  739

seq1  TCCAATTTGTGCTGAAATCTTTTTGTTTCCACCAATGGTGGAAGGGATGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTGTGCTGAAATCTTTTTGTTTCCACCAATGGTGGAAGGGATGT  789

seq1  TTTGAATAACCACCTGGTCTGTGAAACTAAAGTTCAGATCACAAGCTGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAACCACCTGGTCTGTGAAACTAAAGTTCAGATCACAAGCTGAC  839

seq1  CTACTTCACCTATATTTTCATATCAAGCACCAAGTATCTATAATTCCTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCACCTATATTTTCATATCAAGCACCAAGTATCTATAATTCCTTA  889

seq1  GACTAAGCACCATAGTGGGTACATCAAGACACTTTCTCTCTGAAGCAACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGCACCATAGTGGGTACATCAAGACACTTTCTCTCTGAAGCAACA  939

seq1  TAAGAACTGCATGCCCATATGACAATGAACACTTGAAACACAATAGCAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTGCATGCCCATATGACAATGAACACTTGAAACACAATAGCAAA  989

seq1  TTTTCCTGTGCTTCTGAGAATGATTTCAGGACACGGGGAAAAAAAAAGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTGCTTCTGAGAATGATTTCAGGACACGGGGAAAAAAAAAGCA  1039

seq1  AATGTAGCACAGATGAAAGGTGCAGAGAGATCTGTGCAAAATTCCCCTGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGCACAGATGAAAGGTGCAGAGAGATCTGTGCAAAATTCCCCTGA  1089

seq1  TTGGCAGGCCAGCCAAATGGCATCTACAGAGCTGTGCTTTGGTGGAAAAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGGCCAGCCAAATGGCATCTACAGAGCTGTGCTTTGGTGGAAAAC  1139

seq1  AAAGAACACTCTAGGAAGTCCCATGGCTGTGGATCACCTACCGCTGAAGA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACACTCTAGGAAGTCCCATGGCTGTGGATCACCTACCGCTGAAGA  1189

seq1  ATTC  1198
      ||||
seq2  ATTC  1193

seq1: chr6_77284101_77285031
seq2: B6Ng01-148F02.g_178_1100

seq1  GGTGGGGGTTGGGTACTGGTTAGTTCATAATGTTTTTCCACCTATAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTTGGGTACTGGTTAGTTCATAATGTTTTTCCACCTATAGGGT  50

seq1  TGCAGAACCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGG  100

seq1  ACCCTGTGTTTCATCCAATAGATAACTGTGAGCATCCACTTCTGTATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGTTTCATCCAATAGATAACTGTGAGCATCCACTTCTGTATTTG  150

seq1  CCAGGCACTTGCATAGCCTCACAAGAGACAGCTATATCAGGGTTCTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACTTGCATAGCCTCACAAGAGACAGCTATATCAGGGTTCTGTCA  200

seq1  GCAAAATCTTGCTGGCATATGCAATAGACTCTCGGTTTGGTGGCCGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCTTGCTGGCATATGCAATAGACTCTCGGTTTGGTGGCCGTTTA  250

seq1  TGGGATGGATCTCTGGGTGGGGCAGTCCCTGGATGGTCCTTCCTTCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGATCTCTGGGTGGGGCAGTCCCTGGATGGTCCTTCCTTCTGTC  300

seq1  TCAGCTTTGTTTTTGTAACTCCTTCCATGGGTATTTTGTTTTGCATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTGTTTTTGTAACTCCTTCCATGGGTATTTTGTTTTGCATTCTA  350

seq1  AGAAGGAACGAAGTATCCACACTTTGGTTTTCCTTCTTCTTGACTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAACGAAGTATCCACACTTTGGTTTTCCTTCTTCTTGACTTTCAT  400

seq1  GTGGTTTGCAAATTGTATCTTGGGAAGTCTAAGTTTCTGGGCTAATATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGCAAATTGTATCTTGGGAAGTCTAAGTTTCTGGGCTAATATCC  450

seq1  ACTCATCAGTGAGTGCATATCATGTATGGTTTTTTTGTGATTGGGCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCAGTGAGTGCATATCATGTATGGTTTTTTTGTGATTGGGCTGTT  500

seq1  CTTTCTTCTTGACTACTTGAAGTTTGCCTTTACTGCTGGTACTAACCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTGACTACTTGAAGTTTGCCTTTACTGCTGGTACTAACCAGT  550

seq1  ATTACCACAAGCAATCATGCCAGTCTCTGTGAAACCATAGAAGGATGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCACAAGCAATCATGCCAGTCTCTGTGAAACCATAGAAGGATGTAA  600

seq1  TA-TTTATTTTTTTTAAATTTTAATTCCTGTTAATTTAGGAAGCAACAGG  649
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTTTTTAAATTTTAATTCCTGTTAATTTAGGAAGCAACAGG  650

seq1  AAAAGCAAAATATTGCAATATAACATGACACATAAGTCTGTCTCTGGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAATATTGCAATATAACATGACACATAAGTCTGTCTCTGGCTT  700

seq1  ACAAATTTTCCAACCTTAAGTTGGTGTGAGACAGACACACGGTCAGTAGA  749
      | ||||||| | |||||||||||||||||||||||||||| |||||||||
seq2  A-AAATTTTTCCACCTTAAGTTGGTGTGAGACAGACACACTGTCAGTAGA  749

seq1  AAGTGGAACTTGGAATTTTGGTGTTTTGCTGAGCCATTAATATAGGACAT  799
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  AAGTGGAACTGGGATTTTTGGTGTTTTGCTGAGCCATTAATATAGGACAT  799

seq1  TATGCTGCTTTGTCTAATCAATACAGTATTTGATAAATTATGTAATATA-  848
      |||||||| |||||||||||| |||||| |||||||| ||||| ||||| 
seq2  TATGCTGC-TTGTCTAATCAA-ACAGTA-TTGATAAA-TATGT-ATATAT  844

seq1  TTCAATACTTTAAGATAAAAGGGACA-CTTTGTTTAATGTACGATTTTCC  897
      |||||| |||  |||||||  ||||| ||||||||| ||||||||||| |
seq2  TTCAATCCTT--AGATAAA--GGACACCTTTGTTTATTGTACGATTTT-C  889

seq1  CAAGTATACGTAAGACTTCTGAAAGGATTTCAGA  931
      |||  |||||||| ||||||||||||||||||||
seq2  CAATGATACGTAATACTTCTGAAAGGATTTCAGA  923