BAC Information

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BAC

Clone NameB6Ng01-149C20
Chromosome6 (Build37)
Map Location 117,435,735 - 117,599,772
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149C20.bB6Ng01-149C20.g
ACCDH945587DH945588
length1,1621,123
definitionDH945587|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C20, 5' end.DH945588|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,598,588 - 117,599,772)(117,435,735 - 117,436,862)
sequence
gaattctgcacagctacatagattctgtcttaaaacctactcaaaaatga
ataaatgcaaaattctgtataaaacacattaagaatattttaaatgtatt
gtcagtgacacacggaagcagagcatgtcctcagaggatacatcgtgagt
ctggtcacatcaggagaagcaagcaggctgtatccactgcttgacctgga
ataggtgaggactggcactcagcatccttcctcaagtgcaggacctacac
tttggatttttatggacttcacagtaggctgtagaaagatcttagggtct
cgttagaaagcaccagataaagctgggatttggaaagaggaacttcagaa
agagcctagaagatgcccaaggcccacagcagcattcctcaattgaccct
tggatggaagtgtcctgtgtttgctgttgtgggtgttgctcacttgcaaa
gtgctcagcggctagtggaactaagcttgcaatagcagttaacttaaatt
taactttgcattggtgccaatgagacaaggccagacggtcacccagtttc
ccagctttcctggtacagtcacagcctatgctgacattttgaaagccctg
gggaccacagagtagaacatgcttactgttgggcttctgcaaaaaaaatc
cctcctgatttggtcttgcttttgagtttagggaagaaaaccacaaatca
ttccttaggttcagcatgcagtaagacagaaagggctttaaacagcacag
ctataacccaggagaaactaggagaccgtaacaaactaaactgagattca
gaagatggccaagacaataaacatgatgaagaaccttacagcaacaaatc
tgaaatcaagtgaacaggagagaaaaaaccccaagaccacatcaacccat
gtttatgaaaaacacaatcctttgttaaaagaaaatctagccttaagaac
acagttaatttcattagccagtttgattggttgctgaaggaatgagattc
tgattttataaaggtctttaagaggttcttagatgagaaacaattaagat
gttattccaaagcactcaatgataaaatccatatttgaagactcaaggaa
taaatggctgaagaaattgggaagaaataatttttttttttctggaattt
aaggcaccaaaa
gaattctggagttcaggaacactgaacaacttgccaaagacctttggatg
atgcgtggagcccaaatgaggctgaagcaggtgagagacagctgcttccc
cacagcacatttgcaaaccactgcggactcttgggtttgagtgtaagccc
ttccatgtcaacagtctcaatggtttattttgaatattatttaaatgtaa
tttttccttttttttgtttttctttgtatatgttacttgagcaaaataat
ggacttcactgagatgttttcaaacatttctatcatgtcctttgatcata
tcgccctctctcatctccctcccctgacctcttcactctctccaaatact
ctccctttaactggatctgtttgcttctttaatccagattttacatataa
gcaaaaacatgtgttatttgttttcctgagtctggctcattcagcttaac
attatgatttgtcccatgaattcccctacaaatatggctgaataggaact
taactgtggatatatttgctcccaaaatttatattttttgcatgaaaaaa
aaatcttgattattttatctgcacagaagttcaggtggaaaaatatctct
ttcttcatttgaaatgtatatgtactctagtcatatttttaatttgaaat
taaaatataattacaccatttttcccattcctttcttaagtatttcctaa
atatatacacacaatctgtctagcccgtatcatactcgtatactttttta
tttagaatttttgagaatttcatccatcatttacattcttcatttccatc
ttcactgcttcccctccaacttcttcagtgcccttcctcttaaatcatga
catctaataattgttcctattacacacaacgtacacacacacttatacac
actttattaagcccagttagttcttctcttaatgtacaggattttaggat
ggccacttgattgggtgacttatcaggaagtttttcctggagaagacggt
tctcttttatcagtcattggttgccatagctcttgatctagaattgggtc
tgtgagcttctcgtatctatatggcccacccaggggtgttgacattagca
ccgtcgggtttgaacatgcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_117598588_117599772
seq2: B6Ng01-149C20.b_46_1207 (reverse)

seq1  TTTTGGTGCCTGAGATTTTTCCAGGAAAAAAAAA--TATATCTTCCAAAA  48
      ||||||||||| | |   |||||| |||||||||  ||| |||||| || 
seq2  TTTTGGTGCCTTAAA---TTCCAGAAAAAAAAAAATTATTTCTTCCCAA-  46

seq1  TTTTTCTTTCAGCTATTTTATTCCTTGAGGTCTCAAATATGGATTTTAAT  98
        |||| |||||| | |||||||||||||   ||||||||||||||| ||
seq2  --TTTC-TTCAGCCA-TTTATTCCTTGAGTCTTCAAATATGGATTTT-AT  91

seq1  CTATTTTGAGTTGCTTTGGATATACATCTTAATTTGTTTTCTCATCTTAA  148
      |    ||||| |||||||||   |||||||||||   ||||||||| |||
seq2  C---ATTGAG-TGCTTTGGAATAACATCTTAATT--GTTTCTCATC-TAA  134

seq1  GAACCTCTTAAAGACCTTTTATAAAATCAGAATTCTCAATTCCTTCAGCA  198
      |||||||||||||||| ||||||||||||||| |||| ||||||||||||
seq2  GAACCTCTTAAAGACC-TTTATAAAATCAGAA-TCTC-ATTCCTTCAGCA  181

seq1  ACCAATCAAACTGGCTAATGAAATTAACTGTGTTCCTTAAGGCTAGATTT  248
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCAATCAAACTGGCTAATGAAATTAACTGTGTT-CTTAAGGCTAGATTT  230

seq1  TTCTTTTTAACAAAGGATTTGTGTTTTTTCATAAACATGGGTTGATGTGG  298
      |   ||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  T--CTTTTAACAAAGGA-TTGTG-TTTTTCATAAACATGGGTTGATGTGG  276

seq1  TCTTGGGGTTTTTTTCTCTCCTGTTCACTTGATTTCAGATTTGTTGCTGT  348
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGG-TTTTTTCTCTCCTGTTCACTTGATTTCAGATTTGTTGCTGT  325

seq1  AAGGTTCTTCATCATGTTTATTGTCTTGGCCATCTTCTGAATCTCAGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTTCATCATGTTTATTGTCTTGGCCATCTTCTGAATCTCAGTTT  375

seq1  AGTTTGTTACGGTCTCCTAGTTTCTCCTGGGTTATAGCTGTGCTGTTTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTACGGTCTCCTAGTTTCTCCTGGGTTATAGCTGTGCTGTTTAA  425

seq1  AGCCCTTTCTGTCTTACTGCATGCTGAACCTAAGGAATGATTTGTGGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTCTGTCTTACTGCATGCTGAACCTAAGGAATGATTTGTGGTTT  475

seq1  TCTTCCCTAAACTCAAAAGCAAGACCAAATCAGGAGGGATTTTTTTTGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTAAACTCAAAAGCAAGACCAAATCAGGAGGGATTTTTTTTGCA  525

seq1  GAAGCCCAACAGTAAGCATGTTCTACTCTGTGGTCCCCAGGGCTTTCAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCAACAGTAAGCATGTTCTACTCTGTGGTCCCCAGGGCTTTCAAA  575

seq1  ATGTCAGCATAGGCTGTGACTGTACCAGGAAAGCTGGGAAACTGGGTGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGCATAGGCTGTGACTGTACCAGGAAAGCTGGGAAACTGGGTGAC  625

seq1  CGTCTGGCCTTGTCTCATTGGCACCAATGCAAAGTTAAATTTAAGTTAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGGCCTTGTCTCATTGGCACCAATGCAAAGTTAAATTTAAGTTAAC  675

seq1  TGCTATTGCAAGCTTAGTTCCACTAGCCGCTGAGCACTTTGCAAGTGAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTGCAAGCTTAGTTCCACTAGCCGCTGAGCACTTTGCAAGTGAGC  725

seq1  AACACCCACAACAGCAAACACAGGACACTTCCATCCAAGGGTCAATTGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCACAACAGCAAACACAGGACACTTCCATCCAAGGGTCAATTGAG  775

seq1  GAATGCTGCTGTGGGCCTTGGGCATCTTCTAGGCTCTTTCTGAAGTTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGCTGTGGGCCTTGGGCATCTTCTAGGCTCTTTCTGAAGTTCCT  825

seq1  CTTTCCAAATCCCAGCTTTATCTGGTGCTTTCTAACGAGACCCTAAGATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAATCCCAGCTTTATCTGGTGCTTTCTAACGAGACCCTAAGATC  875

seq1  TTTCTACAGCCTACTGTGAAGTCCATAAAAATCCAAAGTGTAGGTCCTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAGCCTACTGTGAAGTCCATAAAAATCCAAAGTGTAGGTCCTGC  925

seq1  ACTTGAGGAAGGATGCTGAGTGCCAGTCCTCACCTATTCCAGGTCAAGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGAAGGATGCTGAGTGCCAGTCCTCACCTATTCCAGGTCAAGCA  975

seq1  GTGGATACAGCCTGCTTGCTTCTCCTGATGTGACCAGACTCACGATGTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATACAGCCTGCTTGCTTCTCCTGATGTGACCAGACTCACGATGTAT  1025

seq1  CCTCTGAGGACATGCTCTGCTTCCGTGTGTCACTGACAATACATTTAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGGACATGCTCTGCTTCCGTGTGTCACTGACAATACATTTAAAA  1075

seq1  TATTCTTAATGTGTTTTATACAGAATTTTGCATTTATTCATTTTTGAGTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAATGTGTTTTATACAGAATTTTGCATTTATTCATTTTTGAGTA  1125

seq1  GGTTTTAAGACAGAATCTATGTAGCTGTGCAGAATTC  1185
      |||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAGACAGAATCTATGTAGCTGTGCAGAATTC  1162

seq1: chr6_117435735_117436862
seq2: B6Ng01-149C20.g_69_1191

seq1  GAATTCTGGAGTTCAGGAACACTGAACAACTTGCCAAAGACCTTTGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGTTCAGGAACACTGAACAACTTGCCAAAGACCTTTGGATG  50

seq1  ATGCGTGGAGCCCAAATGAGGCTGAAGCAGGTGAGAGACAGCTGCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTGGAGCCCAAATGAGGCTGAAGCAGGTGAGAGACAGCTGCTTCCC  100

seq1  CACAGCACATTTGCAAACCACTGCGGACTCTTGGGTTTGAGTGTAAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACATTTGCAAACCACTGCGGACTCTTGGGTTTGAGTGTAAGCCC  150

seq1  TTCCATGTCAACAGTCTCAATGGTTTATTTTGAATATTATTTAAATGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTCAACAGTCTCAATGGTTTATTTTGAATATTATTTAAATGTAA  200

seq1  TTTTTCCTTTTTTTTGTTTTTCTTTGTATATGTTACTTGAGCAAAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTTTTTTTGTTTTTCTTTGTATATGTTACTTGAGCAAAATAAT  250

seq1  GGACTTCACTGAGATGTTTTCAAACATTTCTATCATGTCCTTTGATCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCACTGAGATGTTTTCAAACATTTCTATCATGTCCTTTGATCATA  300

seq1  TCGCCCTCTCTCATCTCCCTCCCCTGACCTCTTCACTCTCTCCAAATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCTCTCTCATCTCCCTCCCCTGACCTCTTCACTCTCTCCAAATACT  350

seq1  CTCCCTTTAACTGGATCTGTTTGCTTCTTTAATCCAGATTTTACATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTAACTGGATCTGTTTGCTTCTTTAATCCAGATTTTACATATAA  400

seq1  GCAAAAACATGTGTTATTTGTTTTCCTGAGTCTGGCTCATTCAGCTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAACATGTGTTATTTGTTTTCCTGAGTCTGGCTCATTCAGCTTAAC  450

seq1  ATTATGATTTGTCCCATGAATTCCCCTACAAATATGGCTGAATAGGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATTTGTCCCATGAATTCCCCTACAAATATGGCTGAATAGGAACT  500

seq1  TAACTGTGGATATATTTGCTCCCAAAATTTATATTTTTTGCATGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGGATATATTTGCTCCCAAAATTTATATTTTTTGCATGAAAAAA  550

seq1  AAATCTTGATTATTTTATCTGCACAGAAGTTCAGGTGGAAAAATATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGATTATTTTATCTGCACAGAAGTTCAGGTGGAAAAATATCTCT  600

seq1  TTCTTCATTTGAAATGTATATGTACTCTAGTCATATTTTTAATTTGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTTGAAATGTATATGTACTCTAGTCATATTTTTAATTTGAAAT  650

seq1  TAAAATATAATTACACCA-TTTTCCCATTCCCTTCTTAAGTA-TTCCTAA  698
      |||||||||||||||||| |||||||||||| |||||||||| |||||||
seq2  TAAAATATAATTACACCATTTTTCCCATTCCTTTCTTAAGTATTTCCTAA  700

seq1  ATATATACACACAATCTGTCTAGCCCGTATCATACTCGTATACTTTTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATATACACACAATCTGTCTAGCCCGTATCATACTCGTATACTTTTTT-  749

seq1  ATTTAGAATTTTTGAGAATTTCATCCATCATTTACATTCTTCATTTCCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATTTTTGAGAATTTCATCCATCATTTACATTCTTCATTTCCAT  799

seq1  CTTCACTGCTTCCCCTCCAACTTCTTCAGTGCCCTTCCTCTTAAATCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGCTTCCCCTCCAACTTCTTCAGTGCCCTTCCTCTTAAATCATG  849

seq1  ACATCT-ATAATTGTTCCTATTACACACAACGTACACACACACATATACA  897
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  ACATCTAATAATTGTTCCTATTACACACAACGTACACACACACTTATACA  899

seq1  CAC-TTATTAAGCCCAGTTAGTTCTTCTCTT-ATGTACAGGATTTTAGGA  945
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACTTTATTAAGCCCAGTTAGTTCTTCTCTTAATGTACAGGATTTTAGGA  949

seq1  TGGCCACTTGATTGGGTGACCTATCAGGAAGCTTTTCCTTGGAGAAGACC  995
      |||||||||||||||||||| |||||||||| |||||| ||||||||| |
seq2  TGGCCACTTGATTGGGTGACTTATCAGGAAGTTTTTCC-TGGAGAAGA-C  997

seq1  GGTTCTCCTTTTAACCAGTCATTGGTTGCCTATAGCTCTTGATCTAGGAA  1045
      |||||||  ||| | ||||||||||||||| ||||||||||||||| |||
seq2  GGTTCTC--TTTTATCAGTCATTGGTTGCC-ATAGCTCTTGATCTA-GAA  1043

seq1  TTGGGTCTTGTGAGCTCTCTCGTATCTATATTGGCACACCAAGTGGTGTT  1095
      ||||||| |||||||| ||||||||||||| |||| |||| || ||||||
seq2  TTGGGTC-TGTGAGCT-TCTCGTATCTATA-TGGCCCACCCAGGGGTGTT  1090

seq1  GACATTATGCA-CGTCTGGTTTAGACATGCACAT  1128
      ||||||| ||| |||| |||||  ||||||||||
seq2  GACATTA-GCACCGTCGGGTTTGAACATGCACAT  1123