BAC Information

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BAC

Clone NameB6Ng01-149E01
Chromosome6 (Build37)
Map Location 84,914,283 - 85,049,982
singlet/doubletdoublet
Overlap geneExoc6b, Npm3-ps1
Upstream geneZfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1, LOC665129
Downstream geneEG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149E01.bB6Ng01-149E01.g
ACCDH945643DH945644
length1,0831,069
definitionDH945643|Mus musculus domesticus DNA, BAC clone: B6Ng01-149E01, 5' end.DH945644|Mus musculus domesticus DNA, BAC clone: B6Ng01-149E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,914,283 - 84,915,374)(85,048,890 - 85,049,982)
sequence
gaattcacttggttgaccaggccgcccctgaactctgcctgcctctgctt
cccatgtactaagattaaaggcgcacaccaccagcccatctatggttatt
ctttacatgcaagagtgagaatgttttttttctgttgtggtattcttagt
tatgtttattaaagtagaacaggttcaaataggttcaaatattaatctta
gcaactctgtcaccagaaaactttaaaacttattgatccaataactagtt
ctgcttttctcctaatacttcctttgtactccctatgaccatcctggtct
tctctgagtgaatcttcttccctttcaaacattcagttaaaacatgcttt
ctctccagaagtttcttgctaagccttctcatgggagggactgtaattag
aaaatgaagtggaggttacaaacaatgagcaccccaacttgtttgtacat
ttttaggtagtactacagtctatgagttttatcctctttaaattgtgagt
ctcaactcccacgattttatttcttggacagaatcgaggtctttctgacc
acttgtgaaaaaggaatctaggaaggaagagcagatggcaggaaccacag
tacttcccatccagctggggaggtgactgttctcaaatgttatttccatt
gtgtttaatgtggctcggggccttttgctagcaccttttttatttgccat
gtgttctgtccaaccttagtgggaaaaaggactctggtcaagactttgat
tctaggaattaaccagccaccatggctagcaagattaaaagccttttcag
acagactgtactaggtttttttaataccctgtttagaaatgactttatga
actgaaattaggcctgttacttcatggctaatagagagaatggaccgagt
gctgtcattttatatgatgcaagcctctggcaacagatgtatttttagtt
ctgatattgcttttaacaaatgaaaccaaatactgttgtgattggtgtct
cagtaagcatgaacatagctagggatttccctactgtcaactattatccc
agttacaattctaattctcagcgtgaaactagg
gaattctatttatcctccttctcctggagcttagatgaaggtgaggagaa
ggtgaaggtggagagaagaggctcagaagctctccttaggaagcagggaa
ggtgtgaagattttccaggcctggctgcatgcttttcaaggctttcccat
tggtagcaggagcagttgtttctgggtgactggtggtgtagaaccaagcc
ctctcctcattgaatttttggtctctcagatgctcaatgatttcttcagg
cttatagtccatgactctcatggtcctgacaatgctagggcttggggtac
ctaggaaactttggaagtcggtggtaatcttgccttgctgtccctggtta
tggagtgtgtgtactggctagttttgtgtctacttgacacagctggagtt
atcatagagaaaggaacttcagttgaggaaatgtctccatgagatccaaa
ctgtaaggcattttctcaattagtgatcaagggggaaaggtcccttgggg
gtgggaccatctctgggctggtagtcttggttctataagagagcaggctg
agcaagccagaagaagcaagccagtaaagaacatccctccatggcttctg
catcagctcctgtgttggagaccataccatgagaaagtaagcttttcgca
gtttcccactctaatagccaaatggccttgtgttaggagctggttacctc
ctcctccctatcccttcctggcacctaaggccctaaacatttgaattata
gttccctattccttatctcttcctgactcccaagacttctaaggacctga
gttatgtgctgagcccagcttgacaccccgggctgttaaaggaggaatct
acattccagagataagactcagggtgcctctcgcctgcagtcagaattca
gccttcatgtccccagatgcctactctttgttctttgttaattccccctc
agccctcctatttccctcactggtgctatacctagctttttcagcctata
actagacttgacagaatctcttggtctcctctttttccccgcccgttcct
gcagtttgctgtcccacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_84914283_84915374
seq2: B6Ng01-149E01.b_45_1127

seq1  GAATTCACTTGGTTGACCAGGCCGCCCCTGAACTCTGCCTGCCTCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGGTTGACCAGGCCGCCCCTGAACTCTGCCTGCCTCTGCTT  50

seq1  CCCATGTACTAAGATTAAAGGCGCACACCACCAGCCCATCTATGGTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTACTAAGATTAAAGGCGCACACCACCAGCCCATCTATGGTTATT  100

seq1  CTTTACATGCAAGAGTGAGAATGTTTTTTTTCTGTTGTGGTATTCTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATGCAAGAGTGAGAATGTTTTTTTTCTGTTGTGGTATTCTTAGT  150

seq1  TATGTTTATTAAAGTAGAACAGGTTCAAATAGGTTCAAATATTAATCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATTAAAGTAGAACAGGTTCAAATAGGTTCAAATATTAATCTTA  200

seq1  GCAACTCTGTCACCAGAAAACTTTAAAACTTATTGATCCAATAACTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTGTCACCAGAAAACTTTAAAACTTATTGATCCAATAACTAGTT  250

seq1  CTGCTTTTCTCCTAATACTTCCTTTGTACTCCCTATGACCATCCTGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCTCCTAATACTTCCTTTGTACTCCCTATGACCATCCTGGTCT  300

seq1  TCTCTGAGTGAATCTTCTTCCCTTTCAAACATTCAGTTAAAACATGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTGAATCTTCTTCCCTTTCAAACATTCAGTTAAAACATGCTTT  350

seq1  CTCTCCAGAAGTTTCTTGCTAAGCCTTCTCATGGGAGGGACTGTAATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGAAGTTTCTTGCTAAGCCTTCTCATGGGAGGGACTGTAATTAG  400

seq1  AAAATGAAGTGGAGGTTACAAACAATGAGCACCCCAACTTGTTTGTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGTGGAGGTTACAAACAATGAGCACCCCAACTTGTTTGTACAT  450

seq1  TTTTAGGTAGTACTACAGTCTATGAGTTTTATCCTCTTTAAATTGTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTAGTACTACAGTCTATGAGTTTTATCCTCTTTAAATTGTGAGT  500

seq1  CTCAACTCCCACGATTTTATTTCTTGGACAGAATCGAGGTCTTTCTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCCCACGATTTTATTTCTTGGACAGAATCGAGGTCTTTCTGACC  550

seq1  ACTTGTGAAAAAGGAATCTAGGAAGGAAGAGCAGATGGCAGGAACCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGAAAAAGGAATCTAGGAAGGAAGAGCAGATGGCAGGAACCACAG  600

seq1  TACTTCCCATCCAGCTGGGGAGGTGACTGTTCTCAAATGTTATTTCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCCATCCAGCTGGGGAGGTGACTGTTCTCAAATGTTATTTCCATT  650

seq1  GTGTTTAATGTGGCTCGGGGCCTTTTGCTAGCACCTTTTTTATTTGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAATGTGGCTCGGGGCCTTTTGCTAGCACCTTTTTTATTTGCCAT  700

seq1  GTGTTCTGTCCAACCTTAGTGGGAAAAAGGACTCTGGTCAAGACTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGTCCAACCTTAGTGGGAAAAAGGACTCTGGTCAAGACTTTGAT  750

seq1  TCTAGGAATTAACCAGCCACCATGGCTAGCAAGATTAAAAGCCTTTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAATTAACCAGCCACCATGGCTAGCAAGATTAAAAGCCTTTTCAG  800

seq1  ACAGACTGTACTAGGTTTTTTTAATACCCTGTTTAGAAATGACTTTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTACTAGGTTTTTTTAATACCCTGTTTAGAAATGACTTTATGA  850

seq1  ACTGAAATTAGGCCTGTTACTTCATGGCTAATAGAGAGAATGGACCGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATTAGGCCTGTTACTTCATGGCTAATAGAGAGAATGGACCGAGT  900

seq1  GCTGTCATTTTATATGATGCAAGCCTCTGGCAACAGATGTATTTTTAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATTTTATATGATGCAAGCCTCTGGCAACAGATGTATTTTTAGTT  950

seq1  CTGATATTGCTTTTTAACAAATGAAAACCAAAATACTGTTGTGATTGGTG  1000
      |||||||||| |||||||||||||||  | ||||||||||||||||||||
seq2  CTGATATTGC-TTTTAACAAATGAAA--CCAAATACTGTTGTGATTGGTG  997

seq1  TCTTAAGTAAGCCATGAACATAGCTAGGGGATTTCCCTACTTGTCAACTA  1050
      || | |||||| |||||||||||||| ||||||||||||| |||||||||
seq2  TC-TCAGTAAG-CATGAACATAGCTA-GGGATTTCCCTAC-TGTCAACTA  1043

seq1  TATCCCCAGTTACATTTCTAAATTCTCAAGCGTGAAACTAGG  1092
      |   |||||||||| |||| ||||||| ||||||||||||||
seq2  TTATCCCAGTTACAATTCT-AATTCTC-AGCGTGAAACTAGG  1083

seq1: chr6_85048890_85049982
seq2: B6Ng01-149E01.g_66_1134 (reverse)

seq1  TCGTGGGGAACAGCAAACCTGCAAGAGAAACGGGCGGGGGAAAAAAGAGA  50
      |||||||  |||||||| ||||   || |||||||||||  |||||||| 
seq2  TCGTGGG--ACAGCAAA-CTGC---AGGAACGGGCGGGG--AAAAAGAG-  41

seq1  GAGACCAAGGAGGATTCCTGTCAAGGTCTAAGTTTATTAGGCTGAAAAAA  100
      |||||||||   |||| ||||||| |||| ||||   |||||||  ||||
seq2  GAGACCAAG--AGATT-CTGTCAA-GTCT-AGTT--ATAGGCTG--AAAA  82

seq1  AGCTAGGTTATAAGCACACAGTGAGGGGAAATAGGGAGGGGCTGAGGGGG  150
      ||||||| ||| ||||| |||||| ||||||||||   ||||||||||||
seq2  AGCTAGG-TAT-AGCAC-CAGTGA-GGGAAATAGG--AGGGCTGAGGGGG  126

seq1  AATTAACAAAGAACAAAGAAGTAGGCATCTGGGGACATGAAGGCTGAATT  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATTAACAAAGAACAAAG-AGTAGGCATCTGGGGACATGAAGGCTGAATT  175

seq1  CTGACTGCAGGCGAGAGGCACCCTGAGTCTTATCTCTGGAATGTAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCAGGCGAGAGGCACCCTGAGTCTTATCTCTGGAATGTAGATTC  225

seq1  CTCC-TTAACAGCCCGGGGTGTCAAGCTGGGCTCAGCACATAACTCAGGT  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAACAGCCCGGGGTGTCAAGCTGGGCTCAGCACATAACTCAGGT  275

seq1  CCTTAGAAGTCTTGGGAGTCAGGAAGAGATAAGGAATAGGGAACTATAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAAGTCTTGGGAGTCAGGAAGAGATAAGGAATAGGGAACTATAAT  325

seq1  TCAAATGTTTAGGGCCTTAGGTGCCAGGAAGGGATAGGGAGGAGGAGGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTTTAGGGCCTTAGGTGCCAGGAAGGGATAGGGAGGAGGAGGTA  375

seq1  ACCAGCTCCTAACACAAGGCCATTTGGCTATTAGAGTGGGAAACTGCGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCCTAACACAAGGCCATTTGGCTATTAGAGTGGGAAACTGCGAA  425

seq1  AAGCTTACTTTCTCATGGTATGGTCTCCAACACAGGAGCTGATGCAGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTACTTTCTCATGGTATGGTCTCCAACACAGGAGCTGATGCAGAAG  475

seq1  CCATGGAGGGATGTTCTTTACTGGCTTGCTTCTTCTGGCTTGCTCAGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGGGATGTTCTTTACTGGCTTGCTTCTTCTGGCTTGCTCAGCCT  525

seq1  GCTCTCTTATAGAACCAAGACTACCAGCCCAGAGATGGTCCCACCCCCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTATAGAACCAAGACTACCAGCCCAGAGATGGTCCCACCCCCAA  575

seq1  GGGACCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGTTTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGTTTGGA  625

seq1  TCTCATGGAGACATTTCCTCAACTGAAGTTCCTTTCTCTATGATAACTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGGAGACATTTCCTCAACTGAAGTTCCTTTCTCTATGATAACTCC  675

seq1  AGCTGTGTCAAGTAGACACAAAACTAGCCAGTACACACACTCCATAACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTCAAGTAGACACAAAACTAGCCAGTACACACACTCCATAACCA  725

seq1  GGGACAGCAAGGCAAGATTACCACCGACTTCCAAAGTTTCCTAGGTACCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGCAAGGCAAGATTACCACCGACTTCCAAAGTTTCCTAGGTACCC  775

seq1  CAAGCCCTAGCATTGTCAGGACCATGAGAGTCATGGACTATAAGCCTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCTAGCATTGTCAGGACCATGAGAGTCATGGACTATAAGCCTGAA  825

seq1  GAAATCATTGAGCATCTGAGAGACCAAAAATTCAATGAGGAGAGGGCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATTGAGCATCTGAGAGACCAAAAATTCAATGAGGAGAGGGCTTG  875

seq1  GTTCTACACCACCAGTCACCCAGAAACAACTGCTCCTGCTACCAATGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACACCACCAGTCACCCAGAAACAACTGCTCCTGCTACCAATGGGA  925

seq1  AAGCCTTGAAAAGCATGCAGCCAGGCCTGGAAAATCTTCACACCTTCCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGAAAAGCATGCAGCCAGGCCTGGAAAATCTTCACACCTTCCCT  975

seq1  GCTTCCTAAGGAGAGCTTCTGAGCCTCTTCTCTCCACCTTCACCTTCTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAAGGAGAGCTTCTGAGCCTCTTCTCTCCACCTTCACCTTCTCC  1025

seq1  TCACCTTCATCTAAGCTCCAGGAGAAGGAGGATAAATAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCATCTAAGCTCCAGGAGAAGGAGGATAAATAGAATTC  1069