BAC Information

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BAC

Clone NameB6Ng01-149F06
Chromosome6 (Build37)
Map Location 46,330,500 - 46,447,603
singlet/doubletdoublet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149F06.bB6Ng01-149F06.g
ACCDH945695DH945696
length8751,120
definitionDH945695|Mus musculus domesticus DNA, BAC clone: B6Ng01-149F06, 5' end.DH945696|Mus musculus domesticus DNA, BAC clone: B6Ng01-149F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,330,500 - 46,331,391)(46,446,477 - 46,447,603)
sequence
gaattcatagagtaatgttttcactatttaattctacatgcctttaagaa
aagggtcctttcttcttcaagctattttttaatgaaaaagctaattatcc
cttaaaacaacattttttttgcatcttgtaataaaaccaggatataattt
agtaagtttctaatagtaagttaatgagttttatccaagagctcacatca
tgtggtgcattacttttatgtatacataatgtttctaatctgagcatgct
tgagtttttagagttttgtcagcaaaaaaagggaggctaaaagcaggctt
atagctccccaacatgctgaacctgagtatttcacagcatctgattatac
aaagtctctgtgaaacattgtaagctctttgcaacaaaatgatgaacagc
agggacaaattgctaaggtagatagcagaaacccatttcttatgttcagg
cggtggtagttgtccttggatgtgacctgacctattttttgtgaccttgc
atgaacaaagtagagtgcctgtaaatgttttgtgtagtaagaggtccagg
tactggtgggaacctgtataaaagttttcattttgatcttaatcacactc
agtagcttatatgtgactatatcaatggatacacaccaaacaactttatt
atcttttttttttttttttttattgtatcagagtataaggaaatcctctg
ttgtttttttttttttccattttttattaggtatttagctcatttacatt
tccaatgctataccaaaagttcccttaccacctaccccactccctaccac
cactcccccctttgggcctggcgtccctgtacgggcacacaaattgcagc
caatgggctctctttcagtgatggc
gaattcaacacatacacacacacaagaacaaaaaaaaatgctagtacagg
aggggtgagaacaaacatcagtcagaaaagttcttgactcacaagcatgt
tgatctgagttcaatctcagagcccatataggactgtatatgtatggtcc
catataggactgtatatgtatggtccaagtactggagaggtgtagataac
tagatccctggagcttgctgtccaatcaatctagcctaattgtgagatcc
aggttcagtgagaaactgagtcaataaaaattggtgtatgatgacagaga
attacatctgagggttttatttatttattttttttgtgatccatgtatgc
aggcacacacatatgtgaagacacatgcacatacacactcatatgcatcc
acacaaaaacacacacaaagaattggaaaaggaaatatggcagagtaata
ttggtgtggtggaagatttgataaagtatgtgttcatttctctcaacaaa
aagacttcttttgaagcaatctgttgaaagaattactgagtgaagtctat
gtccctgtgacaaatgcgatcttgctgaatgaaatgtgtaataaagccat
ctgcatccttgcttcaaacaacacatggaaatggaaaagccttttccttt
aatgagtcttctaaatccatttgaattcatagaatcatggttcttgtcac
tcaatggcaggatattttatttagcaatttgatggacataagattcactt
gcaccttcatcagcaaagcaaagttgttgggtttgaataatccctcagtc
cacaacaggcatgccctgcctgcctatgatggtgcagccatacattcatc
aataggaaataaattctcacttactgtagaattggatttttcagtagctc
atcttagaagtaaccttcactgggctatgatgaatgttttgtcacctaag
tacaatgttcagtctataaatgacaaatccctggttgtaaaagggatgga
tgcagaatggatttgcataagaaatatccagctgatctacttgaatttct
tcgtggtacgatctaagagggaaggttgaaacatcttcgaaagacacctt
tacctttaagactggctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46330500_46331391
seq2: B6Ng01-149F06.b_44_918

seq1  GAATTCATAGAGTAATGTTTTCACTATTTAATTCTACATGCCTTTAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAGTAATGTTTTCACTATTTAATTCTACATGCCTTTAAGAA  50

seq1  AAGGGTCCTTTCTTCTTCAAGCTATTTTTTAATGAAAAAGCTAATTATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCCTTTCTTCTTCAAGCTATTTTTTAATGAAAAAGCTAATTATCC  100

seq1  CTTAAAACAACATTTTTTTTGCATCTTGTAATAAAACCAGGATATAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACAACATTTTTTTTGCATCTTGTAATAAAACCAGGATATAATTT  150

seq1  AGTAAGTTTCTAATAGTAAGTTAATGAGTTTTATCCAAGAGCTCACATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTTCTAATAGTAAGTTAATGAGTTTTATCCAAGAGCTCACATCA  200

seq1  TGTGGTGCATTACTTTTATGTATACATAATGTTTCTAATCTGAGCATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCATTACTTTTATGTATACATAATGTTTCTAATCTGAGCATGCT  250

seq1  TGAGTTTTTAGAGTTTTGTCAGCAAAAAAAGGGAGGCTAAAAGCAGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTTAGAGTTTTGTCAGCAAAAAAAGGGAGGCTAAAAGCAGGCTT  300

seq1  ATAGCTCCCCAACATGCTGAACCTGAGTATTTCACAGCATCTGATTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCCCCAACATGCTGAACCTGAGTATTTCACAGCATCTGATTATAC  350

seq1  AAAGTCTCTGTGAAACATTGTAAGCTCTTTGCAACAAAATGATGAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCTGTGAAACATTGTAAGCTCTTTGCAACAAAATGATGAACAGC  400

seq1  AGGGACAAATTGCTAAGGTAGATAGCAGAAACCCATTTCTTATGTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAAATTGCTAAGGTAGATAGCAGAAACCCATTTCTTATGTTCAGG  450

seq1  CGGTGGTAGTTGTCCTTGGATGTGACCTGACCTATTTTTTGTGACCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTAGTTGTCCTTGGATGTGACCTGACCTATTTTTTGTGACCTTGC  500

seq1  ATGAACAAAGTAGAGTGCCTGTAAATGTTTTGTGTAGTAAGAGGTCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAAGTAGAGTGCCTGTAAATGTTTTGTGTAGTAAGAGGTCCAGG  550

seq1  TACTGGTGGGAACCTGTATAAAAGTTTTCATTTTGATCTTAATCACACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGGGAACCTGTATAAAAGTTTTCATTTTGATCTTAATCACACTC  600

seq1  AGTAGCTTATATGTGACTATATCAATGGATACACACCAAACAACTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTATATGTGACTATATCAATGGATACACACCAAACAACTTTATT  650

seq1  ATCTTTTTTTTTTTTTTTTTTATTGTATCAGAGTATAAGGAAATCCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTTTTTTTTTTTTTTATTGTATCAGAGTATAAGGAAATCCTCTG  700

seq1  TTGTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATT  750

seq1  TCCAATGCTATACCAAAAGTCCCCCTTACCCACCCACCCCCACTCCCCTA  800
      ||||||||||||||||||||  |||||| ||||| | ||||||| |||||
seq2  TCCAATGCTATACCAAAAGT-TCCCTTA-CCACCTA-CCCCACT-CCCTA  796

seq1  CCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACA  850
      ||   ||||| ||||||||||| ||||||||  ||||||||  |||||||
seq2  CC--ACCACT-CCCCCCTTTGGGCCTGGCGT--CCCTGTAC--GGGCACA  839

seq1  CAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGC  892
      |||| |    |   |||||||| |||||||| ||||||||||
seq2  CAAATT----GCAGCCAATGGG-CTCTCTTT-CAGTGATGGC  875

seq1: chr6_46446477_46447603
seq2: B6Ng01-149F06.g_69_1188 (reverse)

seq1  AGCAGCCAG--CTATAAGTAAA-GTGTCTTCTGAAGGATGTTTTCAACCT  47
      |||||||||   || | ||||| |||||||  ||| |||| |||||||||
seq2  AGCAGCCAGTCTTAAAGGTAAAGGTGTCTTTCGAA-GATG-TTTCAACCT  48

seq1  TCCCTCTAGGATTCCTAACCACGGAAGGAAATCATGTAGATCAGCTAGAA  97
      |||||||  |||  |  ||||| |||| || ||| ||||||||||| || 
seq2  TCCCTCTTAGAT--CGTACCAC-GAAGAAATTCAAGTAGATCAGCTGGA-  94

seq1  TAATCTCTTATGCAAAATCCACTCTGCAATTCCATCACTTTTACAACCA-  146
        || |||||||| ||||||| ||||||  |||||| |||||||||||| 
seq2  -TATTTCTTATGC-AAATCCATTCTGCA--TCCATCCCTTTTACAACCAG  140

seq1  GGATTTGTCATTTATAAGACTGGACATTGTACCTAAGGTGACAAAACATT  196
      ||||||||||||||| |||||| |||||||| || |||||||||||||||
seq2  GGATTTGTCATTTAT-AGACTGAACATTGTA-CTTAGGTGACAAAACATT  188

seq1  CATCATAG-CCAGTGAAGGTTACTTCTAAGATGAGCTACTGAAAAATCCA  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGCCCAGTGAAGGTTACTTCTAAGATGAGCTACTGAAAAATCCA  238

seq1  ATTCTACAGTAAGTGAGAATTTATTTCCTATTGATGAATGTATGGCTGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACAGTAAGTGAGAATTTATTTCCTATTGATGAATGTATGGCTGCA  288

seq1  CCATCATAGGCAGGCAGGGCATGCCTGTTGTGGACTGAGGGATTATTCAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATAGGCAGGCAGGGCATGCCTGTTGTGGACTGAGGGATTATTCAA  338

seq1  ACCCAACAACTTTGCTTTGCTGATGAAGGTGCAAGTGAATCTTATGTCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAACTTTGCTTTGCTGATGAAGGTGCAAGTGAATCTTATGTCCA  388

seq1  TCAAATTGCTAAATAAAATATCCTGCCATTGAGTGACAAGAACCATGATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGCTAAATAAAATATCCTGCCATTGAGTGACAAGAACCATGATT  438

seq1  CTATGAATTCAAATGGATTTAGAAGACTCATTAAAGGAAAAGGCTTTTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATTCAAATGGATTTAGAAGACTCATTAAAGGAAAAGGCTTTTCC  488

seq1  ATTTCCATGTGTTGTTTGAAGCAAGGATGCAGATGGCTTTATTACACATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATGTGTTGTTTGAAGCAAGGATGCAGATGGCTTTATTACACATT  538

seq1  TCATTCAGCAAGATCGCATTTGTCACAGGGACATAGACTTCACTCAGTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGCAAGATCGCATTTGTCACAGGGACATAGACTTCACTCAGTAA  588

seq1  TTCTTTCAACAGATTGCTTCAAAAGAAGTCTTTTTGTTGAGAGAAATGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAACAGATTGCTTCAAAAGAAGTCTTTTTGTTGAGAGAAATGAA  638

seq1  CACATACTTTATCAAATCTTCCACCACACCAATATTACTCTGCCATATTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTTTATCAAATCTTCCACCACACCAATATTACTCTGCCATATTT  688

seq1  CCTTTTCCAATTCTTTGTGTGTGTTTTTGTGTGGATGCATATGAGTGTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCAATTCTTTGTGTGTGTTTTTGTGTGGATGCATATGAGTGTGT  738

seq1  ATGTGCATGTGTCTTCACATATGTGTGTGCCTGCATACATGGATCACAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATGTGTCTTCACATATGTGTGTGCCTGCATACATGGATCACAAA  788

seq1  AAAAATAAATAAATAAAACCCTCAGATGTAATTCTCTGTCATCATACACC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAATAAAACCCTCAGATGTAATTCTCTGTCATCATACACC  838

seq1  AATTTTTATTGACTCAGTTTCTCACTGAACCTGGATCTCACAATTAGGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTGACTCAGTTTCTCACTGAACCTGGATCTCACAATTAGGCT  888

seq1  AGATTGATTGGACAGCAAGCTCCAGGGATCTAGTTATCTACACCTCTCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGATTGGACAGCAAGCTCCAGGGATCTAGTTATCTACACCTCTCCA  938

seq1  GTACTTGGACCATACATATACAGTCCTATATGGGACCATACATATACAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGGACCATACATATACAGTCCTATATGGGACCATACATATACAGT  988

seq1  CCTATATGGGCTCTGAGATTGAACTCAGATCAACATGCTTGTGAGTCAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATGGGCTCTGAGATTGAACTCAGATCAACATGCTTGTGAGTCAAG  1038

seq1  AACTTTTCTGACTGATGTTTGTTCTCACCCCTCCTGTACTAGCATTTTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTGACTGATGTTTGTTCTCACCCCTCCTGTACTAGCATTTTTT  1088

seq1  TTTGTTCTTGTGTGTGTGTATGTGTTGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTGTGTGTGTGTATGTGTTGAATTC  1120