BAC Information

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BAC

Clone NameB6Ng01-149G04
Chromosome6 (Build37)
Map Location 106,841,479 - 106,842,712
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn
Downstream genePpia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149G04.bB6Ng01-149G04.g
ACCDH945736DH945737
length1,2081,159
definitionDH945736|Mus musculus domesticus DNA, BAC clone: B6Ng01-149G04, 5' end.DH945737|Mus musculus domesticus DNA, BAC clone: B6Ng01-149G04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagagaaagagagcagatgtatgtaggagttggatggaggaaag
ggaagagagaaaattacataattatattttaattttagaaaaaaattaaa
aagaatattcacaaagggaacttgattcattattatggagacttggaaaa
gcagcgaataaccaaggttattaagtacacacatgagtaaataatgaata
aatacataaataaatgctatggggatggagataatcctgactttacatgt
caatggcaaatgctgagttcaggatgaatagggtcttgttgccatggaac
atcatggaatattccctgtagaaatggaaggcaggtgaccctaattctaa
cccctgttcatcctgacatcttagtgaccctgagcaagtcttttagacat
tgtttctgtgggtctactcatcttgtaaaataagacagaagtcctgtgaa
cacagggtgtttgccacagggacaggccttggccagtctgtcagccccat
ccatagggacagcatgcttagaaacaggagggatctttgtgttgccagag
gaatgacttgatgtgagaatgacagggaggccttttctgtaaaaaaaaaa
aaagtcaatacagcttggcttcctgccagggacaaacatatcctcttttg
ttctccagtggtatagacgtgaaaaggtctccagaagctgtgtgaatggc
cgcttcatcaacaggcactgaagccaaacataatggtttaaatattcaca
atcgataaaacaaatctgtaaacttgatctagctgggaacagaacaagct
cccaggaaagcactaaggagcagagaaacaggatgctaaacagaaactca
gggctttcctctttccactctacccaggtgcatattccagcaaacaaaga
ctagaattcctttcttctatgagcactcaaaatgatgaattcataatcct
gtgtctctcttggaaacagatgaccatgactattaccctcaatatttaaa
gaaaaaaatcactctttcctgtgaacatgcactccttttctccccttatc
cccactacagagctcattttaaactagaagatgtattaaatcgattcact
ggttaaagcacggctgatatatgccttcaggtccatgtcatttggggcct
caggatttattcaagcatcggagtcaattaggaaccttgtttcttgactt
gacttgct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccaggt
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaatttctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccccccttagaagtgggaa
caaaacatccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaacgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatatagctgtctcatgggagactatgctggggcctagcaaac
acagagtggatgctcacacatggatggatcactgggctcccaatggagga
gctagagaaagtacccaaggagctaaagggatctgcaccctataggtgga
caacatatgaattaacagtacccagactcttgactcttgctgctatgttt
acaaagaatgactagcggtcattcatgaaagagggacctattggaacttg
ctacctttatagcccagtatcgggtatgctagtccaaagtgggaaatggt
gtgtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106841479_106842712
seq2: B6Ng01-149G04.b_46_1253

seq1  GAATTCAAGAGAAAGAGAGCAGATGTATGTAGGAGTTGGATGGAGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAAAGAGAGCAGATGTATGTAGGAGTTGGATGGAGGAAAG  50

seq1  GGAAGAGAGAAAATTACATAATTATATTTTAATTTTAGAAAAAAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGAAAATTACATAATTATATTTTAATTTTAGAAAAAAATTAAA  100

seq1  AAGAATATTCACAAAGGGAACTTGATTCATTATTATGGAGACTTGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATTCACAAAGGGAACTTGATTCATTATTATGGAGACTTGGAAAA  150

seq1  GCAGCGAATAACCAAGGTTATTAAGTACACACATGAGTAAATAATGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGAATAACCAAGGTTATTAAGTACACACATGAGTAAATAATGAATA  200

seq1  AATACATAAATAAATGCTATGGGGATGGAGATAATCCTGACTTTACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAATAAATGCTATGGGGATGGAGATAATCCTGACTTTACATGT  250

seq1  CAATGGCAAATGCTGAGTTCAGGATGAATAGGGTCTTGTTGCCATGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCAAATGCTGAGTTCAGGATGAATAGGGTCTTGTTGCCATGGAAC  300

seq1  ATCATGGAATATTCCCTGTAGAAATGGAAGGCAGGTGACCCTAATTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAATATTCCCTGTAGAAATGGAAGGCAGGTGACCCTAATTCTAA  350

seq1  CCCCTGTTCATCCTGACATCTTAGTGACCCTGAGCAAGTCTTTTAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTTCATCCTGACATCTTAGTGACCCTGAGCAAGTCTTTTAGACAT  400

seq1  TGTTTCTGTGGGTCTACTCATCTTGTAAAATAAGACAGAAGTCCTGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTGGGTCTACTCATCTTGTAAAATAAGACAGAAGTCCTGTGAA  450

seq1  CACAGGGTGTTTGCCACAGGGACAGGCCTTGGCCAGTCTGTCAGCCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTGTTTGCCACAGGGACAGGCCTTGGCCAGTCTGTCAGCCCCAT  500

seq1  CCATAGGGACAGCATGCTTAGAAACAGGAGGGATCTTTGTGTTGCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGGACAGCATGCTTAGAAACAGGAGGGATCTTTGTGTTGCCAGAG  550

seq1  GAATGACTTGATGTGAGAATGACAGGGAGGCCTTTTCTGTAAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTTGATGTGAGAATGACAGGGAGGCCTTTTCTGTAAAAAAAAAA  600

seq1  AAAGTCAATACAGCTTGGCTTCCTGCCAGGGACAAACATATCCTCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAATACAGCTTGGCTTCCTGCCAGGGACAAACATATCCTCTTTTG  650

seq1  TTCTCCAGTGGTATAGACGTGAAAAGGTCTCCAGAAGCTGTGTGAATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGTGGTATAGACGTGAAAAGGTCTCCAGAAGCTGTGTGAATGGC  700

seq1  CGCTTCATCAACAGGCACTGAAGCCAAACATAATGG-TTAAATATTCACA  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGCTTCATCAACAGGCACTGAAGCCAAACATAATGGTTTAAATATTCACA  750

seq1  ATCGATAAAACAAATCTGTAAACTTGATCTAGCTGGGAACAGAACAAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATAAAACAAATCTGTAAACTTGATCTAGCTGGGAACAGAACAAGCT  800

seq1  CCCAGGAAAGCACTAAGGAGCAGAGAAACAAGGATGCTAAACAGAAACTC  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCCAGGAAAGCACTAAGGAGCAGAGAAAC-AGGATGCTAAACAGAAACTC  849

seq1  AGGGCTTTCCTCTTTCCACTCTACCCAGGTGCATATTCCAGCAAACAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTCCTCTTTCCACTCTACCCAGGTGCATATTCCAGCAAACAAAG  899

seq1  ACTAGAATTCCTTTCTTCTAATGAGCACTCAAAAATGATGAATTCATAAT  949
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  ACTAGAATTCCTTTCTTCT-ATGAGCACTC-AAAATGATGAATTCATAAT  947

seq1  CCTGTGTCTCTCTTGGAAACAGAATGACCATGACTAATTACCCTCAATAT  999
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  CCTGTGTCTCTCTTGGAAACAG-ATGACCATGACT-ATTACCCTCAATAT  995

seq1  TTAAAAGAAAAAAAATCACTCTTTCCCTGTGAACATGCACTCC-TTTCTC  1048
      |||||   |||||||||||||||| |||||||||||||||||| ||||||
seq2  TTAAA--GAAAAAAATCACTCTTT-CCTGTGAACATGCACTCCTTTTCTC  1042

seq1  CCC-TATCTCCCACTACAGAGCTCCATTTTAAACCTAGAAGATGTAATTA  1097
      ||| |||| |||||||||||||| ||||||||| ||||||||||| ||||
seq2  CCCTTATC-CCCACTACAGAGCT-CATTTTAAA-CTAGAAGATGT-ATTA  1088

seq1  AATTAGAATTCACTGTGGAAAAGCAGCGGCTGATAATAATTGCTTTTCAG  1147
      |||    |||||||| |  |||||| |||||||| |||  |||  |||||
seq2  AAT--CGATTCACTG-GTTAAAGCA-CGGCTGAT-ATA--TGC-CTTCAG  1130

seq1  AGTCCATGGTAATTGGTGCTCCAAGGATTTTATTTCGAGGCATCAGAGTC  1197
       |||||||  | |||| || |  |||| ||||||   | ||||| |||||
seq2  -GTCCATGTCATTTGGGGC-CTCAGGA-TTTATT--CAAGCATCGGAGTC  1175

seq1  AATTTAGGAGCCTTGTTTTATCTGGACTTGACTTGCT  1234
      || |||||| |||||||   ||| |||||||||||||
seq2  AA-TTAGGAACCTTGTT---TCTTGACTTGACTTGCT  1208