BAC Information

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BAC

Clone NameB6Ng01-149G22
Chromosome6 (Build37)
Map Location 35,753,842 - 35,888,887
singlet/doubletdoublet
Overlap geneLOC100039327
Upstream geneAgbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
Downstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149G22.bB6Ng01-149G22.g
ACCDH945772DH945773
length823764
definitionDH945772|Mus musculus domesticus DNA, BAC clone: B6Ng01-149G22, 5' end.DH945773|Mus musculus domesticus DNA, BAC clone: B6Ng01-149G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,888,061 - 35,888,887)(35,753,842 - 35,754,605)
sequence
gaattcttgtgtttgctacatctatattttttttttatgaaattcctacg
caaatggatggacctggagggcttcatcctgagtgaggtaacccaatcac
tgataaagtctcacattatgtcctcactgataagtcaatattagcccaga
aacttgggatacccctcctatctgtactctttactgacctcctgataatc
tagatttttccagaaaaagggctccctatgaaccggcaaaattgagtttt
attttcctttcatattgtaaactaacgtaacactaaataaaatttctatt
tccccaaaggatatgtaaaggaaccttccagtgggagcactcggagaatg
atgttcaacctcccgatggtggcttgagaggacagttctctgatcttact
ttaatgtcaatatactccgttacagctttagaaatttttttctaagctac
tcatcaccttaatatttttgtgaatctctgaatgaaaacttgaaaacgga
aacttttgaacaatttaatttttacacacgtcagttttccatctaactgg
ttttacaaacaatgtttaaatgatgtatgttttttatgtttagcatacca
tgtcatgaacatgacttctcaaatagtcctaaccctccccccaaagtgaa
tgacaagaaaccattctctttgaagtacataaaggtccggcatgattctt
catcatttatgctaaaagcatcagactgtgatagtgctttttttttttca
ctggctgggaaactactgcttggaggttgaacgctcctgcaggtctcaga
gactattgacgagagaaggcagc
gaattcattctgcttgtgggtaaaaatgttatagaaaaagtatttttaat
cacaaatatgactcttcttcctatatttctagtggttgggagaatgtcta
tgaaaggcaggttcctcttggtcctgcaggttctgtttaccaggtttgtg
gttgctgatgaaatttttgttttccttggttttcttccccctggcctgtg
tctttcataggacgccccacaaggctcattccctgatccctcttgatctc
tgtggatcttctcagctcttgctctgaagcaggaaggttctagaacaagc
aaattggtccccttgggaaattaatcacgcagacgaggcagttctgagtc
taacaggtacattaaggggagttctgaggcctgtctcgcttgacaagaaa
ttgcctggggggagtctaataaacccagacgagcctggctactacagaca
ctgaagtctggaattgcttagcctgtttaatattgtaagaacagatagaa
acttcagaggtagaagatgccatctgttgggaacaggattctgatcagtg
cagagagaacagagcatccggacattgggatctccgatttgcccctgttc
atcttgaagaaaccttttatgttccttgatctcatgtgtttctgaaatct
aaatccccccatgtggcagatacatgtattatgctagatagaacacgcta
tcaatggcatgcggtgtttctgcctccgggaggcagactgagaatagaga
gcgggtactgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35888061_35888887
seq2: B6Ng01-149G22.b_45_867 (reverse)

seq1  GCTGCCTTCTCTCATCATGAGTGTTCTGAGGCCTCCAGGAGCCTTCAACC  50
      ||||||||||||| |||  |||  |||||| ||| ||||||| |||||||
seq2  GCTGCCTTCTCTCGTCAATAGT-CTCTGAGACCTGCAGGAGCGTTCAACC  49

seq1  TCCTAGCAGTAGCTTCCCAAACAAGTGAAAAAAAAAAAAGACTAAAAAAA  100
      ||| |||||||| ||||| | | |||||||||||||||  ||| |  | |
seq2  TCCAAGCAGTAGTTTCCC-AGCCAGTGAAAAAAAAAAAGCACT-ATCACA  97

seq1  GACTAATGCTTTTAGCATAAAAGATGAAGAATCCTGCCGGACCTTTATGT  150
      | || |||||||||||||||| ||||||||||| ||||||||||||||||
seq2  GTCTGATGCTTTTAGCATAAATGATGAAGAATCATGCCGGACCTTTATGT  147

seq1  ACTTCAAAGAGAATGGCTTCTTGTCATTTACTTTGGGGGGAGGGGTAGGA  200
      |||||||||||||||| ||||||||||| ||||||||||||||| |||||
seq2  ACTTCAAAGAGAATGGTTTCTTGTCATTCACTTTGGGGGGAGGGTTAGGA  197

seq1  CTATTTGAGAACTCATGTTCATGACATGTGATGCTAACCATTAAAAACAT  250
      ||||||||||| ||||||||||||||||  ||||||| ||| ||||||||
seq2  CTATTTGAGAAGTCATGTTCATGACATGGTATGCTAAACATAAAAAACAT  247

seq1  ATTTCATTTAAACATTGTTTTTAAAACCAGTTAGATGGAAAACTGACGTG  300
      |  ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATCATTTAAACATTGTTTGTAAAACCAGTTAGATGGAAAACTGACGTG  297

seq1  TGTAAAAATTAAATTGTTCAAAAGTTTCCGTTTTTAAGTTTTCATTCAGA  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTAAAAATTAAATTGTTCAAAAGTTTCCGTTTTCAAGTTTTCATTCAGA  347

seq1  GATTCACAAAAATATTAAGGTGCTGAGTAGCTTAGAAAAAAATTTCTAAA  400
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GATTCACAAAAATATTAAGGTGATGAGTAGCTTAGAAAAAAATTTCTAAA  397

seq1  GCTGTAACTGAGTATATTGACATTAAAGTAAGATCAGAGAACTGTCCTCT  450
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAACGGAGTATATTGACATTAAAGTAAGATCAGAGAACTGTCCTCT  447

seq1  CAAGCCACCATCCTGTGCTTGAACATCATGCTCTGAGTGCTCACATTTAA  500
      ||||||||||||  | | ||||||||||| ||| |||||||| || |  |
seq2  CAAGCCACCATCGGGAGGTTGAACATCATTCTCCGAGTGCTCCCACTGGA  497

seq1  AGGTTCCTTTACATATCCTTTGGGGAAATAGAAATTTTCTTTAGTGTTTT  550
      |||||||||||||||||||||||||||||||||||||| |||||||||  
seq2  AGGTTCCTTTACATATCCTTTGGGGAAATAGAAATTTTATTTAGTGTTAC  547

seq1  GTTTGTTTACAATCTGAAATGAAAATAAAACTCAATTTTGCAGGATTATA  600
      ||| ||||||||| ||||| ||||||||||||||||||||| || | |||
seq2  GTTAGTTTACAATATGAAAGGAAAATAAAACTCAATTTTGCCGGTTCATA  597

seq1  GGGAGACCTTTCTCTTAAAAAATCTAGATTATCATGCGTTTAGTAAATTG  650
      ||||| ||||| |||  ||||||||||||||||| | | | ||||||  |
seq2  GGGAGCCCTTTTTCTGGAAAAATCTAGATTATCAGGAGGTCAGTAAAGAG  647

seq1  TATCTTATATCTTGGGTATCCCAAGTTTCTGGGCTAATATCTACTTATCA  700
      || |  |||    |||||||||||||||||||||||||||  ||||||||
seq2  TA-CAGATAGGAGGGGTATCCCAAGTTTCTGGGCTAATATTGACTTATCA  696

seq1  GTGAGTACATATTGTGTGAGTTTCTTTGTGATTGGGTTACCTCACTCAGG  750
      ||||| ||||| |||| || ||| |  |||||||||||||||||||||||
seq2  GTGAGGACATAATGTGAGACTTTATCAGTGATTGGGTTACCTCACTCAGG  746

seq1  ATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAAAAAAAA  800
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGAAGCCCTCCAGGTCCATCCATTTGCGTAGGAATTTCATAAAAAAAAA  796

seq1  ATCTAGATTAAGCAAACACTTGAATTC  827
      || |||||  |||||||||  ||||||
seq2  ATATAGATGTAGCAAACACAAGAATTC  823

seq1: chr6_35753842_35754605
seq2: B6Ng01-149G22.g_68_831

seq1  GAATTCATTCTGCTTATAGGTAAAAATGTTATAGAAAAATATATTTTTAA  50
      ||||||||||||||| | |||||||||||||||||||||  |||||||||
seq2  GAATTCATTCTGCTTGTGGGTAAAAATGTTATAGAAAAA-GTATTTTTAA  49

seq1  TCAGAAATATGACTCTTCTTCCTATATTTCTAGTGGTTGGGAGAATGTCT  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATATGACTCTTCTTCCTATATTTCTAGTGGTTGGGAGAATGTCT  99

seq1  ATGAAAGGCAGGTTCAGCTTGGTCCTGCAGGTTCTGTTTACCAGGTTTGT  150
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  ATGAAAGGCAGGTTCCTCTTGGTCCTGCAGGTTCTGTTTACCAGGTTTGT  149

seq1  GGTTGCTGATGAGATTTTTGTTTTCCTTGGTTTTCTTAACACTGCCCTGT  200
      |||||||||||| ||||||||||||||||||||||||  | ||| |||||
seq2  GGTTGCTGATGAAATTTTTGTTTTCCTTGGTTTTCTTCCCCCTGGCCTGT  199

seq1  GTCTTTCAGAGGACGCCCCACAAGGCTCATTCCCTGATCCCTCTTGATCT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCATAGGACGCCCCACAAGGCTCATTCCCTGATCCCTCTTGATCT  249

seq1  AGTTGGATCTTCTCAGCTCTTGCTCTGAAGCAGGAAGGTTCTAAAACAAG  300
         |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGTGGATCTTCTCAGCTCTTGCTCTGAAGCAGGAAGGTTCTAGAACAAG  299

seq1  CAGATTGGTCCCCTTGGGAAATTAATCAGGCAGAGGAGGCAGTTCTGAGT  350
      || ||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  CAAATTGGTCCCCTTGGGAAATTAATCACGCAGACGAGGCAGTTCTGAGT  349

seq1  CTAACAGGTACATTAAGGGGAGTTCTGAGGCCTGTCTCGCTTGACAGGAA  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAACAGGTACATTAAGGGGAGTTCTGAGGCCTGTCTCGCTTGACAAGAA  399

seq1  ATTGCCTGGGGGGAGTCTAAGAAACCCAGACAGGCCTGGCTCCTACAGAC  450
      |||||||||||||||||||| ||||||||||  |||||||| ||||||||
seq2  ATTGCCTGGGGGGAGTCTAATAAACCCAGACGAGCCTGGCTACTACAGAC  449

seq1  ACTGAAGTCTGGAGTTGCTTAGCCTGTTTAATATTGTTAGAACAGAGAGA  500
      ||||||||||||| ||||||||||||||||||||||| |||||||| |||
seq2  ACTGAAGTCTGGAATTGCTTAGCCTGTTTAATATTGTAAGAACAGATAGA  499

seq1  AACTTCAGAGGTAGAAGATGCAATCTGTTTGGAACAGGATTCTGATCAGT  550
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  AACTTCAGAGGTAGAAGATGCCATCTGTTGGGAACAGGATTCTGATCAGT  549

seq1  GCAGAGAGAACAGAGCAGCCGGACATTGCAGTCTCCAGTTTGCTCCTGTT  600
      ||||||||||||||||| ||||||||||   |||||  ||||| ||||||
seq2  GCAGAGAGAACAGAGCATCCGGACATTGGGATCTCCGATTTGCCCCTGTT  599

seq1  CATCTTGAAG-AACCCTTTATGTTCCTTGATCTCAGCTGTTTCTGAAAGC  649
      |||||||||| |||| |||||||||||||||||||  ||||||||||| |
seq2  CATCTTGAAGAAACCTTTTATGTTCCTTGATCTCATGTGTTTCTGAAATC  649

seq1  TAAATAGGCCTATGTGGCAGATATATGTATAAGGCTGGATAGAACACAGC  699
      |||||   || |||||||||||| |||||| | ||| ||||||||||   
seq2  TAAATCCCCCCATGTGGCAGATACATGTATTATGCTAGATAGAACACGCT  699

seq1  ATCAATGGCATGCGGTGTTTCTGCCTCGGGGAGGCAGAAGGAGAATAGAG  749
      ||||||||||||||||||||||||||| ||||||||||  ||||||||||
seq2  ATCAATGGCATGCGGTGTTTCTGCCTCCGGGAGGCAGACTGAGAATAGAG  749

seq1  AGTGGGTACTGTTTT  764
      || ||||||||||||
seq2  AGCGGGTACTGTTTT  764