BAC Information

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BAC

Clone NameB6Ng01-149N07
Chromosome6 (Build37)
Map Location 38,626,266 - 38,735,692
singlet/doubletdoublet
Overlap geneLOC665180, Hipk2
Upstream geneYbx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2
Downstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149N07.bB6Ng01-149N07.g
ACCDH946065DH946066
length1,0641,103
definitionDH946065|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N07, 5' end.DH946066|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,734,629 - 38,735,692)(38,626,266 - 38,627,357)
sequence
gaattccatgccaggggaagtaaagtaaggcctgcagaatgaccatatat
ccattcctttatctactgtctcggtgccctttttttggtggtgatagggt
agagttgacagggttggcctggaatctacagtccttcttctaagcctcct
aagccctttgtactgtgtaggcagagatgaatagttggccacagaaagga
gttacagcatatacagcctgctgagctgagttgctttttacttttcagac
agtttgctggattccgctgtagaggaataaggcaacgacgacgagtgcag
ctacctccgggcggtgttctaaagcaccagtgcttactcggtgctctgtt
gaccaaggactggcctaattgggaaagttaatatgagagtaattgagtag
aatagagctgtgggaagggtctggacataagaaacctcctataaagatat
tgcagccatcagttgaggtatctttgaacacagaatatcctttaagtcgt
atctgaaacagcctggctcaatgtcccagttcatgtcacccacatcgggg
tccacctgcaagctctttctcacacccttgctttgtccttgtggtctctg
agttaaacagtcaggtttaactcagtgtgttgcttgcttcctggtgacat
tgcctttataactgttcttgggccccaagtgacagtacctgagcccacct
ttgctattcttctcctgccatctgtgtgtaaatgtgtttttttgtctccc
tcccgaaggttccttgaaggctgggactgcgctcacactcctgtgctctc
agggattagcataatgcttttcacatagctggtcctttctggaatgtttg
atgatggtacagccactgagcaggatgtgatgtgtagaagaaaacatacc
ctctctcgttctataaatagtcagaattacatcagctaattaacagtaag
agttgagcatctgtcagtcttgatgcaccaacatctatcagacaaagcag
taaacccatgtcagtcattttgatcaataaactaaattaaacacaggata
aatacactcaagat
gaattcagggtacagtttacagcttgttctctaactttgtggtcccaggg
atgtggttaggttggagtgtctttagtcactgagcttctccctggctcag
gactcaaattgtaaaaggaatttcccagaagttcagtgataagcagggtt
atagagatagctggcgagtgcgagcctgcttatgggagtggcatgcagtc
ctgccaggtcctactctggctgccgagatgtggcttccaggtccgttccc
gatcagggtttttagggttaggagtgtcttaccttgtgtttgcccctgta
ccatttcccatggtgacacactggtcagcttcctcaggggcccccttctt
gtccgtttctctggagccctccctgaggcatagggaggcatagaggcatc
aacagtgtctctgaagggcgttgaggtccagagagatggagagagctgtg
ggaaaaggactggggcatgctgggaacagggcggtgggcaggcactctca
cggacctcagtctgcttccccttctccaagcttccaagggctgcatcaag
tgtgagacaccctgcccggaggactggctgctctacggaaggaaatgcta
ctacttctcggaggaacctagggactggaatacgggaaggcagtactgcc
atacacacgaggcggcgctggccgtgatccaaagccagaaggaactggtg
agcacgtggtcagacgcagggaccctcaggtccatgactgactctaatgg
gacacccacacccaagtagaatgacccgctgtgtgcctgtctgcagtcac
ttagccacctcacagccatgggtgtatagggtgaattccctgggtctgac
actctaaccccgcccccgcagacatcattgcaaggctggtggctgagtta
actccggactgaaggagggtggaatccagaagtagagggtggggaataac
ctcccaggggttgaagtttgggccaggaatctagtcgtattcagcggggc
cacccctgaactcccagcttttcagccaaagcaaactgggaggagggaac
cttttcaggctgggtgggtacatctgtacaaggctttggaaactgtgtcc
agt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38734629_38735692
seq2: B6Ng01-149N07.b_47_1110 (reverse)

seq1  ATCTTGAGTGTATTTATCCTGTGTCTAATTTTAGTTTTATTGTATCAAAA  50
      |||||||||||||||||||||||| ||| ||||| ||||||| |||||||
seq2  ATCTTGAGTGTATTTATCCTGTGTTTAA-TTTAG-TTTATTG-ATCAAAA  47

seq1  TGACTGACATGGGTTTAACTGCTTTGTCTGATAGATGTTGGTGCATC-AG  99
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  TGACTGACATGGGTTT-ACTGCTTTGTCTGATAGATGTTGGTGCATCAAG  96

seq1  ACTGACAGATGCTC-ACTCTTACTGTT-ATTAGCCTGATGT-ATTCTGAC  146
      |||||||||||||| |||||||||||| ||||| ||||||| ||||||||
seq2  ACTGACAGATGCTCAACTCTTACTGTTAATTAG-CTGATGTAATTCTGAC  145

seq1  TAATTTATAGAACGAGAGAGGGTATGTTTTCTCCTACACATC-CATCCTG  195
      | |||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  T-ATTTATAGAACGAGAGAGGGTATGTTTTCTTCTACACATCACATCCTG  194

seq1  CTCAGTGGCTGTACCATCATCAAACATT-CAGAAAGGACCAGCTATGTGA  244
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCAGTGGCTGTACCATCATCAAACATTCCAGAAAGGACCAGCTATGTGA  244

seq1  AAAGCATTATGCTAATCCCTGAGAGCACAGGAGTGTGAGCGCAGTCCCAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTATGCTAATCCCTGAGAGCACAGGAGTGTGAGCGCAGTCCCAG  294

seq1  CCTTCAAGGAACCTTCGGGAGGGAGACAAAAAAACACATTTACACACAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAGGAACCTTCGGGAGGGAGACAAAAAAACACATTTACACACAGA  344

seq1  TGGCAGGAGAAGAATAGCAAAGGTGGGCTCAGGTACTGTCACTTGGGGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAGAAGAATAGCAAAGGTGGGCTCAGGTACTGTCACTTGGGGCC  394

seq1  CAAGAACAGTTATAAAGGCAATGTCACCAGGAAGCAAGCAACACACTGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACAGTTATAAAGGCAATGTCACCAGGAAGCAAGCAACACACTGAG  444

seq1  TTAAACCTGACTGTTTAACTCAGAGACCACAAGGACAAAGCAAGGGTGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTGACTGTTTAACTCAGAGACCACAAGGACAAAGCAAGGGTGTG  494

seq1  AGAAAGAGCTTGCAGGTGGACCCCGATGTGGGTGACATGAACTGGGACAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGCTTGCAGGTGGACCCCGATGTGGGTGACATGAACTGGGACAT  544

seq1  TGAGCCAGGCTGTTTCAGATACGACTTAAAGGATATTCTGTGTTCAAAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGGCTGTTTCAGATACGACTTAAAGGATATTCTGTGTTCAAAGA  594

seq1  TACCTCAACTGATGGCTGCAATATCTTTATAGGAGGTTTCTTATGTCCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAACTGATGGCTGCAATATCTTTATAGGAGGTTTCTTATGTCCAG  644

seq1  ACCCTTCCCACAGCTCTATTCTACTCAATTACTCTCATATTAACTTTCCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCCACAGCTCTATTCTACTCAATTACTCTCATATTAACTTTCCC  694

seq1  AATTAGGCCAGTCCTTGGTCAACAGAGCACCGAGTAAGCACTGGTGCTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGCCAGTCCTTGGTCAACAGAGCACCGAGTAAGCACTGGTGCTTT  744

seq1  AGAACACCGCCCGGAGGTAGCTGCACTCGTCGTCGTTGCCTTATTCCTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCGCCCGGAGGTAGCTGCACTCGTCGTCGTTGCCTTATTCCTCT  794

seq1  ACAGCGGAATCCAGCAAACTGTCTGAAAAGTAAAAAGCAACTCAGCTCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGAATCCAGCAAACTGTCTGAAAAGTAAAAAGCAACTCAGCTCAG  844

seq1  CAGGCTGTATATGCTGTAACTCCTTTCTGTGGCCAACTATTCATCTCTGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTATATGCTGTAACTCCTTTCTGTGGCCAACTATTCATCTCTGC  894

seq1  CTACACAGTACAAAGGGCTTAGGAGGCTTAGAAGAAGGACTGTAGATTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGTACAAAGGGCTTAGGAGGCTTAGAAGAAGGACTGTAGATTCC  944

seq1  AGGCCAACCCTGTCAACTCTACCCTATCACCACCAAAAAAAGGGCACCGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAACCCTGTCAACTCTACCCTATCACCACCAAAAAAAGGGCACCGA  994

seq1  GACAGTAGATAAAGGAATGGATATATGGTCATTCTGCAGGCCTTACTTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGATAAAGGAATGGATATATGGTCATTCTGCAGGCCTTACTTTA  1044

seq1  CTTCCCCTGGCATGGAATTC  1064
      ||||||||||||||||||||
seq2  CTTCCCCTGGCATGGAATTC  1064

seq1: chr6_38626266_38627357
seq2: B6Ng01-149N07.g_68_1170

seq1  GAATTCAGGGTACAGTTTACAGCTTGTTCTCTAACTTTGTGGTCCCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTACAGTTTACAGCTTGTTCTCTAACTTTGTGGTCCCAGGG  50

seq1  ATGTGGTTAGGTTGGAGTGTCTTTAGTCACTGAGCTTCTCCCTGGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTAGGTTGGAGTGTCTTTAGTCACTGAGCTTCTCCCTGGCTCAG  100

seq1  GACTCAAATTGTAAAAGGAATTTCCCAGAAGTTCAGTGATAAGCAGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAATTGTAAAAGGAATTTCCCAGAAGTTCAGTGATAAGCAGGGTT  150

seq1  ATAGAGATAGCTGGCGAGTGCGAGCCTGCTTATGGGAGTGGCATGCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATAGCTGGCGAGTGCGAGCCTGCTTATGGGAGTGGCATGCAGTC  200

seq1  CTGCCAGGTCCTACTCTGGCTGCCGAGATGTGGCTTCCAGGTCCGTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGTCCTACTCTGGCTGCCGAGATGTGGCTTCCAGGTCCGTTCCC  250

seq1  GATCAGGGTTTTTAGGGTTAGGAGTGTCTTACCTTGTGTTTGCCCCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGGTTTTTAGGGTTAGGAGTGTCTTACCTTGTGTTTGCCCCTGTA  300

seq1  CCATTTCCCATGGTGACACACTGGTCAGCTTCCTCAGGGGCCCCCTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCCATGGTGACACACTGGTCAGCTTCCTCAGGGGCCCCCTTCTT  350

seq1  GTCCGTTTCTCTGGAGCCCTCCCTGAGGCATAGGGAGGCATAGAGGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTTCTCTGGAGCCCTCCCTGAGGCATAGGGAGGCATAGAGGCATC  400

seq1  AACAGTGTCTCTGAAGGGCGTTGAGGTCCAGAGAGATGGAGAGAGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTCTCTGAAGGGCGTTGAGGTCCAGAGAGATGGAGAGAGCTGTG  450

seq1  GGAAAAGGACTGGGGCATGCTGGGAACAGGGCGGTGGGCAGGCACTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGACTGGGGCATGCTGGGAACAGGGCGGTGGGCAGGCACTCTCA  500

seq1  CGGACCTCAGTCTGCTTCCCCTTCTCCAAGCTTCCAAGGGCTGCATCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACCTCAGTCTGCTTCCCCTTCTCCAAGCTTCCAAGGGCTGCATCAAG  550

seq1  TGTGAGACACCCTGCCCGGAGGACTGGCTGCTCTACGGAAGGAAATGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACACCCTGCCCGGAGGACTGGCTGCTCTACGGAAGGAAATGCTA  600

seq1  CTACTTCTCGGAGGAACCTAGGGACTGGAATACGGGAAGGCAGTACTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTCGGAGGAACCTAGGGACTGGAATACGGGAAGGCAGTACTGCC  650

seq1  ATACACACGAGGCGGCGCTGGCCGTGATCCAAAGCCAGAAGGAACTGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACGAGGCGGCGCTGGCCGTGATCCAAAGCCAGAAGGAACTGGTG  700

seq1  AGCACGTGGTCAGACGCAGGGACCCTCAGGTCCATGACTGACTCTAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTGGTCAGACGCAGGGACCCTCAGGTCCATGACTGACTCTAATGG  750

seq1  GACACCCACACCCAAGTAGAATGACCCGCTGTGTGCCTGTCTGCAGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCACACCCAAGTAGAATGACCCGCTGTGTGCCTGTCTGCAGTCAC  800

seq1  TTAGCCACCTCACAGCCATGGGTGTATA-GGTGAATCCCCTGGGTCTGAA  849
      |||||||||||||||||||||||||||| ||||||| ||||||||||| |
seq2  TTAGCCACCTCACAGCCATGGGTGTATAGGGTGAATTCCCTGGGTCTG-A  849

seq1  CACTCGAACCCCGCCCCCGCAGACCATCA-TGCAAGGCTGGTTGGCTGAG  898
      ||||| ||||||||||||||||| ||||| ||||||||||| ||||||||
seq2  CACTCTAACCCCGCCCCCGCAGA-CATCATTGCAAGGCTGG-TGGCTGAG  897

seq1  CTAACT-CAGACTGAA-GAGGGT-GAATCCAGAAGTAGAGG--TGGGAAT  943
       ||||| | ||||||| |||||| |||||||||||||||||   ||||||
seq2  TTAACTCCGGACTGAAGGAGGGTGGAATCCAGAAGTAGAGGGTGGGGAAT  947

seq1  AACCTACCAGGGGT--GAGATTTGGCCAGGAATCTAG-CGTATTCAGC-G  989
      ||||| ||||||||   || || |||||||||||||| |||||||||| |
seq2  AACCTCCCAGGGGTTGAAGTTTGGGCCAGGAATCTAGTCGTATTCAGCGG  997

seq1  GGCCACCCCTGAACTCCCAGC-TTTCAGCCAAGGCAAACTGGGAGGATGG  1038
      ||||||||||||||||||||| |||||||||| |||||||||||||| ||
seq2  GGCCACCCCTGAACTCCCAGCTTTTCAGCCAAAGCAAACTGGGAGGA-GG  1046

seq1  GACCCTTTTCAGGCT-GGTGTGTACATC-GTAGCAGGCTTTGGAAGCTGT  1086
      || |||||||||||| |||| ||||||| |||  ||||||||||| ||||
seq2  GAACCTTTTCAGGCTGGGTGGGTACATCTGTACAAGGCTTTGGAAACTGT  1096

seq1  -TCCAGT  1092
       ||||||
seq2  GTCCAGT  1103