BAC Information

Click to search

BAC

Clone NameB6Ng01-149N22
Chromosome6 (Build37)
Map Location 8,991,386 - 9,219,612
singlet/doubletdoublet
Overlap geneNxph1
Upstream geneCol28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149N22.bB6Ng01-149N22.g
ACCDH946090DH946091
length1,1201,138
definitionDH946090|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N22, 5' end.DH946091|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,218,469 - 9,219,612)(8,991,386 - 8,992,525)
sequence
gaattctttattcacatataaagaagcactttcctttatcctagttccat
ttattagaaacagctacttctaaacaggaaagacaacagtatagccaaca
tttaatggagtttcaagttgataggtggggttaccatttcaatataactg
tttcagctcttaacattcctttggcaatcccaccatgaagagagtgtggt
tgggcatttacctcatagacttctgagctacgctcaggtcagtcttgttt
tttgtttttgtttttttgttttgttttgttttaatttacgacttaaatct
aatgttatttaaatctatatatttagattaaacaatcatagtgattttcc
cttatctgcctatggtaaattcaatggaataaaaagctcaactaagatta
ttttcttccataattgttaattgttaaatttttttttaactgcctgtcct
tacactacttcctatacctctctatatgaacaacgtcccaggctctgagg
tagcattcaggtttgggcttctgcaagagtagggtttctgaaagacacct
tatttaagacacctttcttattgagctgggactgatctgcaggcagtcgg
tataagaatggagtcatagtcaactttggcataaaatatgtgagggcatt
cttcaatttcccatttgtgagattattatgtactgaagactctttaaaac
actctatttagttttttttatctcacaaagttcaaaagtaaattttagaa
aagaagaaaaaaatcacatcattgattaccaaaaagtaaaactaaaaaaa
aatatacttcattactttttcacttttcttttgaggttcctctaggcaaa
attaacatcatttgggcagattcatttatgcattctggtgttatcctact
tttgtttaattacacatctacacattttcaaatgtgtttttaatttctgc
gtggtagtcatgaagtaatatcctgtgattacttaatggttctctagtag
aaacttaaattctatctaatccttgaccattaaaatagcacttgctgagc
atatggaacataaattttaggaattaagattttttcctggaatcctgatt
tctcgataatggaaattaat

gaattcctcttctttgtctaatacggctctgagctaccgtgttgataact
catcaggaatttccccacagtaattttccaaatgagactacacagacgtt
ttctactaattgaaatccagcaaaatcagacctaagaaccacaccccttt
cattaatgactagggaaaccgtttctgctgcataggagaagaaggcaagg
ccactttgaatagcagcttcgtactctttaaagatttcagctggattcaa
tttcacaaggaagggaccgcctcagccacacctgccttggcttttcttga
atgggttctgggccagcatgcctctaacctctgtgctgactggaaaacag
gcaggagaagctcagacagtccagagttaccatcaccatgttgtctttgg
ctgtcactggtatctcagctgcaatcatctgccccttttgttaggagtaa
catatattctcatgaaatggtgacagtaaatgtgactttggcatatagag
gccatagcaggtccactcactcagaagggggagctgccctaatgctcgaa
attggtacttcatgttttataattctatccatggatttgtgcttttgagt
gagaattctatacagcctactcaatgagcatatttttatattctggccag
gagagaaacaggcttagtggatgaactgatggaggtagcttcttcaaata
gctcattcatttaggatccaactggaaatagtatggctgacatttttcct
gttgaagaagcctagctaccatgccctaaaagagctaaagagcgatacct
gcaactagagaattgcagtgggctgtgagaattaatccagttgtcttttg
ctccacattaatgaccaactattgttgtaagtgatggattgggtgagaat
actctcacagaaagagacgcccctctgtagtcagttttttctgctttggg
cctttgccacgtagctgacaggcgctcaaagactgtttctttgcctcagt
tctcagagtgcagtgattagctgtgaggaggaaagggctgtgtagtacag
ggagcatttcattttgttggaattgacacagagaaagcaggtagcaaggt
ctactccctggaagaccctccttcccccttgagaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9218469_9219612
seq2: B6Ng01-149N22.b_46_1165 (reverse)

seq1  ATTAATTTCCATTTATCTAAAGATAAATTCCAAGAATTTCAAGAAAAATA  50
      ||||||||||| |||||    || ||||    || ||| || ||||||  
seq2  ATTAATTTCCA-TTATC----GAGAAAT---CAGGATTCCAGGAAAAAAT  42

seq1  CTTAAAATACTGTACAATTTTTATGTTCCAATATGCTCAGCAAAGTGCTA  100
      ||| || | ||    ||  |||||||||| ||||||||||| ||||||||
seq2  CTT-AATTCCT----AAAATTTATGTTCC-ATATGCTCAGC-AAGTGCTA  85

seq1  TTTTAAATGGTCAAGGATTAGATAGAATTTAAGTATCTACTAAGAGAACC  150
      |||| ||||||||||||||||||||||||||||| |||||| ||||||||
seq2  TTTT-AATGGTCAAGGATTAGATAGAATTTAAGTTTCTACT-AGAGAACC  133

seq1  ATTAAGTTAATCACAGGATATTTACTTCATGAACTACCACGCAGAAATTA  200
      |||||| ||||||||||||| |||||||||| ||||||||||||||||||
seq2  ATTAAG-TAATCACAGGATA-TTACTTCATG-ACTACCACGCAGAAATTA  180

seq1  AAAACAACATTTTGAAAATGTGTTAGATGTGTTAATTAAACAAAAGTAGG  250
      ||||| ||| |||||||||||| |||||||| ||||||||||||||||||
seq2  AAAAC-ACA-TTTGAAAATGTG-TAGATGTG-TAATTAAACAAAAGTAGG  226

seq1  AATAACACCAGAATGCATAAATGAATCTGCCCAAATGATGTTAATTTTGC  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATAACACCAGAATGCATAAATGAATCTGCCCAAATGATGTTAATTTTGC  275

seq1  CTAGAGGAACCTCAAAAGAAAAGTGAAAAAGTAATGAAGTATATTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGAACCTCAAAAGAAAAGTGAAAAAGTAATGAAGTATATTTTTTT  325

seq1  TTAGTTTTACTTTTTGGTAATCAATGATGTGATTTTTTTCTTCTTTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTACTTTTTGGTAATCAATGATGTGATTTTTTTCTTCTTTTCTA  375

seq1  AAATTTACTTTTGAACTTTGTGAGAT-AAAAAAACTAAATAGAGTGTTTT  449
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATTTACTTTTGAACTTTGTGAGATAAAAAAAACTAAATAGAGTGTTTT  425

seq1  AAAGAGTCTTCAGTACATAATAATCTCACAAATGGGAAATTGAAGAATGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCTTCAGTACATAATAATCTCACAAATGGGAAATTGAAGAATGC  475

seq1  CCTCACATATTTTATGCCAAAGTTGACTATGACTCCATTCTTATACCGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATATTTTATGCCAAAGTTGACTATGACTCCATTCTTATACCGAC  525

seq1  TGCCTGCAGATCAGTCCCAGCTCAATAAGAAAGGTGTCTTAAATAAGGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCAGATCAGTCCCAGCTCAATAAGAAAGGTGTCTTAAATAAGGTG  575

seq1  TCTTTCAGAAACCCTACTCTTGCAGAAGCCCAAACCTGAATGCTACCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGAAACCCTACTCTTGCAGAAGCCCAAACCTGAATGCTACCTCA  625

seq1  GAGCCTGGGACGTTGTTCATATAGAGAGGTATAGGAAGTAGTGTAAGGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGGACGTTGTTCATATAGAGAGGTATAGGAAGTAGTGTAAGGAC  675

seq1  AGGCAGTTAAAAAAAAATTTAACAATTAACAATTATGGAAGAAAATAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTAAAAAAAAATTTAACAATTAACAATTATGGAAGAAAATAATC  725

seq1  TTAGTTGAGCTTTTTATTCCATTGAATTTACCATAGGCAGATAAGGGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGAGCTTTTTATTCCATTGAATTTACCATAGGCAGATAAGGGAAA  775

seq1  ATCACTATGATTGTTTAATCTAAATATATAGATTTAAATAACATTAGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATGATTGTTTAATCTAAATATATAGATTTAAATAACATTAGATT  825

seq1  TAAGTCGTAAATTAAAACAAAACAAAACAAAAAAACAAAAACAAAAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCGTAAATTAAAACAAAACAAAACAAAAAAACAAAAACAAAAAACA  875

seq1  AGACTGACCTGAGCGTAGCTCAGAAGTCTATGAGGTAAATGCCCAACCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACCTGAGCGTAGCTCAGAAGTCTATGAGGTAAATGCCCAACCAC  925

seq1  ACTCTCTTCATGGTGGGATTGCCAAAGGAATGTTAAGAGCTGAAACAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTTCATGGTGGGATTGCCAAAGGAATGTTAAGAGCTGAAACAGTT  975

seq1  ATATTGAAATGGTAACCCCACCTATCAACTTGAAACTCCATTAAATGTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAAATGGTAACCCCACCTATCAACTTGAAACTCCATTAAATGTTG  1025

seq1  GCTATACTGTTGTCTTTCCTGTTTAGAAGTAGCTGTTTCTAATAAATGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACTGTTGTCTTTCCTGTTTAGAAGTAGCTGTTTCTAATAAATGGA  1075

seq1  ACTAGGATAAAGGAAAGTGCTTCTTTATATGTGAATAAAGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGATAAAGGAAAGTGCTTCTTTATATGTGAATAAAGAATTC  1120


seq1: chr6_8991386_8992525
seq2: B6Ng01-149N22.g_69_1206

seq1  GAATTCCTCTTCTTTGTCTAATACGGCTCTGAGCTACCGTGTTGATAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCTTTGTCTAATACGGCTCTGAGCTACCGTGTTGATAACT  50

seq1  CATCAGGAATTTCCCCACAGTAATTTTCCAAATGAGACTACACAGACGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGAATTTCCCCACAGTAATTTTCCAAATGAGACTACACAGACGTT  100

seq1  TTCTACTAATTGAAATCCAGCAAAATCAGACCTAAGAACCACACCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTAATTGAAATCCAGCAAAATCAGACCTAAGAACCACACCCCTTT  150

seq1  CATTAATGACTAGGGAAACCGTTTCTGCTGCATAGGAGAAGAAGGCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATGACTAGGGAAACCGTTTCTGCTGCATAGGAGAAGAAGGCAAGG  200

seq1  CCACTTTGAATAGCAGCTTCGTACTCTTTAAAGATTTCAGCTGGATTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTGAATAGCAGCTTCGTACTCTTTAAAGATTTCAGCTGGATTCAA  250

seq1  TTTCACAAGGAAGGGACCGCCTCAGCCACACCTGCCTTGGCTTTTCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAGGAAGGGACCGCCTCAGCCACACCTGCCTTGGCTTTTCTTGA  300

seq1  ATGGGTTCTGGGCCAGCATGCCTCTAACCTCTGTGCTGACTGGAAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCTGGGCCAGCATGCCTCTAACCTCTGTGCTGACTGGAAAACAG  350

seq1  GCAGGAGAAGCTCAGACAGTCCAGAGTTACCATCACCATGTTGTCTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAAGCTCAGACAGTCCAGAGTTACCATCACCATGTTGTCTTTGG  400

seq1  CTGTCACTGGTATCTCAGCTGCAATCATCTGCCCCTTTTGTTAGGAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTGGTATCTCAGCTGCAATCATCTGCCCCTTTTGTTAGGAGTAA  450

seq1  CATATATTCTCATGAAATGGTGACAGTAAATGTGACTTTGGCATATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTCTCATGAAATGGTGACAGTAAATGTGACTTTGGCATATAGAG  500

seq1  GCCATAGCAGGTCCACTCACTCAGAAGGGGGAGCTGCCCTAATGCTCGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGCAGGTCCACTCACTCAGAAGGGGGAGCTGCCCTAATGCTCGAA  550

seq1  ATTGGTACTTCATGTTTTATAATTCTATCCATGGATTTGTGCTTTTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTACTTCATGTTTTATAATTCTATCCATGGATTTGTGCTTTTGAGT  600

seq1  GAGAATTCTATACAGCCTACTCAATGAGCATATTTTTATATTCTGGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCTATACAGCCTACTCAATGAGCATATTTTTATATTCTGGCCAG  650

seq1  GAGAGAAACAGGCTTAGTGGATGAACTGATGGAGGTAGCTTCTTCAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAACAGGCTTAGTGGATGAACTGATGGAGGTAGCTTCTTCAAATA  700

seq1  GCTCATTCATTTAGGATCCAACTGGAAATAGTATGGCTGACATTTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCATTTAGGATCCAACTGGAAATAGTATGGCTGACATTTTTCCT  750

seq1  GTTGAAGAAGCCTAGCTACCATGCCCTAAAAGAGCTAAAGAGCGATACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGAAGCCTAGCTACCATGCCCTAAAAGAGCTAAAGAGCGATACCT  800

seq1  GCAACTAGAGAATTGCAGTGGGCTGTGAGAATTAATCCAGTTGTCTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAGAGAATTGCAGTGGGCTGTGAGAATTAATCCAGTTGTCTTTTG  850

seq1  CTCCACATTAATGACCAACTATTGTTGTAAGTGATGGATT-GGTGAGAAT  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCCACATTAATGACCAACTATTGTTGTAAGTGATGGATTGGGTGAGAAT  900

seq1  ACTCTCACAAGAAAGAGACGCCCCTCTGTAGTTCAG-TTTTTCTGCTTT-  947
      |||||||| |||||||||||||||||||||| |||| |||||||||||| 
seq2  ACTCTCAC-AGAAAGAGACGCCCCTCTGTAG-TCAGTTTTTTCTGCTTTG  948

seq1  GGCCTTTGCCACGTAGCTGACA-GCGCTCACAAGACTGTTTCTTTGCCTC  996
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  GGCCTTTGCCACGTAGCTGACAGGCGCTCA-AAGACTGTTTCTTTGCCTC  997

seq1  AGTTCTCAGAGTGCAGTGATTAGCTGTGAGGAGGAGAGGGCTGTGAAGTA  1046
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  AGTTCTCAGAGTGCAGTGATTAGCTGTGAGGAGGAAAGGGCTGTGTAGTA  1047

seq1  CA-GGAGCAATTTCATTTTGTTGGAAATAGACAACAGAGAAAGCAGGGTA  1095
      || ||||| ||||||||||||||| ||| ||| |||||||||||| ||||
seq2  CAGGGAGC-ATTTCATTTTGTTGG-AATTGAC-ACAGAGAAAGCA-GGTA  1093

seq1  GCAAAGGCTACTCCTGTGAAGACCCCTTCTTCCCCC-TCTGAAGAG  1140
      |||| | |||||||   ||||| |||| |||||||| |  ||||||
seq2  GCAAGGTCTACTCCCTGGAAGA-CCCTCCTTCCCCCTTGAGAAGAG  1138


| Home | SequenceCutter | Blast | Download |