BAC Information

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BAC

Clone NameB6Ng01-150E19
Chromosome6 (Build37)
Map Location 20,169,823 - 20,286,076
singlet/doubletdoublet
Overlap genenone
Upstream geneEif3s6-ps4
Downstream geneLOC100040838, Kcnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150E19.bB6Ng01-150E19.g
ACCDH946413DH946414
length4601,081
definitionDH946413|Mus musculus domesticus DNA, BAC clone: B6Ng01-150E19, 5' end.DH946414|Mus musculus domesticus DNA, BAC clone: B6Ng01-150E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,169,823 - 20,170,288)(20,285,026 - 20,286,076)
sequence
catagaaactttccctaatgtttttgagacagggtctcatacagctttga
gaaccctgaaattgctatgtaaccaaggctgacactgaaatcacatatat
acacctgcttctgtctctcaagttttggactcaaaagtgcaccaccacat
tcagctgtatttatttaaaagagactctgatataaagctaccatagacta
gatctctacagagtcttccaagatacagtccacagaattccaaagagtca
acaagctgaagtgccacctgagtcccacttttgagggagaagaaagcaat
cacaaaaggggcaggatggacctgggtgggaaactggactgggggaggga
gtgggggagagaggggaaaccggatctggaattgggcaagggaaaagtgc
cgaaaccctgagggcctgcagaaagaatgggaacagtcaacctctggagg
caggatgtta
gaattctttgtttagctctgcaccccattttttaatggggttatttgatt
ttttggagtgcacctttttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttgatggcgt
ttttgtcttattgacagcatttttgccttacagaagctttgcaattttat
gaggtcccatttatcgattctcgatcttacagcataagccattgctgttc
tattcaggaatttctcccctgtgcccatatcttcgaggcttttccccact
ttctcctctataagtttcactatctctggttttatgtggagttctttgat
ccacttagacttgagctttgtacaaggagataagaatggatcaatttgca
gtcttctacatgataaccgccaattgttcccgcaccatttgttgaaaatg
ctctctttttcccactagatagttttagctcctttgtcaaagatcaagtg
atcataagtgtgtgggttcatttctgggtcttctgttccaggcatcacat
tcttattttctaaatttaataatgcatctggattatagatattagatttc
aggactacatgttttcaggatgtatgtatatcaaataatagctttagtgt
ttttctctgaagcaattcacaaatcttagtgacatggtgagaattgaatt
gtatcattctccaaaatagagaattactgcagtggaggatctcagtacag
atgaactcaggcctttgtgtacagcagaggagaaaactctgttctttctt
gaaaaacttcctggaacattaatagaaaagatcatgagttactactctaa
aactttagaaaacaaataaattttctcacataataaactaggttcattcc
ttcagtttcaaacctaggaaagtccctatggtcactggctcattccctct
agaaatacacatgaaagagtcatttagtgaaccaagagagagctctgggt
ttccagtataaaccagtcataaatactctcaagcagcttaattcccaggt
ctcagtagaataggtaatctcagtaggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20169823_20170288
seq2: B6Ng01-150E19.b_42_507

seq1  GAATTCCATAGAAACTTTCCCTAATGTTTTTGAGACAGGGTCTCATACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGAAACTTTCCCTAATGTTTTTGAGACAGGGTCTCATACAG  50

seq1  CTTTGAGAACCCTGAAATTGCTATGTAACCAAGGCTGACACTGAAATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAACCCTGAAATTGCTATGTAACCAAGGCTGACACTGAAATCAC  100

seq1  ATATATACACCTGCTTCTGTCTCTCAAGTTTTGGACTCAAAAGTGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACACCTGCTTCTGTCTCTCAAGTTTTGGACTCAAAAGTGCACCA  150

seq1  CCACATTCAGCTGTATTTATTTAAAAGAGACTCTGATATAAAGCTACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCAGCTGTATTTATTTAAAAGAGACTCTGATATAAAGCTACCAT  200

seq1  AGACTAGATCTCTACAGAGTCTTCCAAGATACAGTCCACAGAATTCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGATCTCTACAGAGTCTTCCAAGATACAGTCCACAGAATTCCAAA  250

seq1  GAGTCAACAAGCTGAAGTGCCACCTGAGTCCCACTTTTGAGGGAGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACAAGCTGAAGTGCCACCTGAGTCCCACTTTTGAGGGAGAAGAA  300

seq1  AGCAATCACAAAAGGGGCAGGATGGACCTGGGTGGGAAACTGGACTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCACAAAAGGGGCAGGATGGACCTGGGTGGGAAACTGGACTGGGG  350

seq1  GAGGGAGTGGGGGAGAGAGGGGAAACCGGATCTGGAATTGGGCAAGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGTGGGGGAGAGAGGGGAAACCGGATCTGGAATTGGGCAAGGGAA  400

seq1  AAGTGCTGAAACCCTGAGGGCCTGCAGAAAGAATGGGAACAGGCAACCTC  450
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGTGCCGAAACCCTGAGGGCCTGCAGAAAGAATGGGAACAGTCAACCTC  450

seq1  AGGAGGCAGGATGTTA  466
       |||||||||||||||
seq2  TGGAGGCAGGATGTTA  466

seq1: chr6_20285026_20286076
seq2: B6Ng01-150E19.g_110_1148 (reverse)

seq1  CAATTCTACTGAGATTTAACTATTCTACTGAGACCTGGGATATAAGCTGC  50
      |||| ||||||||| ||| |||||||||||||||||||||  ||||||||
seq2  CAATCCTACTGAGA-TTACCTATTCTACTGAGACCTGGGAATTAAGCTGC  49

seq1  CTTGGAGAGTTATTTATGACTGGTTTTATACTGGGAAACCCCAGAGGCTC  100
        | ||||| ||||||||||||| ||||||||||  || |||||| ||| 
seq2  --TTGAGAG-TATTTATGACTGG-TTTATACTGG--AAACCCAGA-GCT-  91

seq1  CTCTCTTGGTTCACTAAATGACTCTTTCATGTGTATGTCTAAGAGGGAAT  150
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  CTCTCTTGGTTCACTAAATGACTCTTTCATGTGTATTTCT-AGAGGGAAT  140

seq1  GAAGCCAGTGACCATAGGGACTTTCCTAGGTTTTGAAACTGAAGGAATGA  200
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  G-AGCCAGTGACCATAGGGACTTTCCTAGG-TTTGAAACTGAAGGAATGA  188

seq1  ACCTAGTTTATTATGTGAGAAAATTTATTTGTTTTCTAAAGTTTTAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTTTATTATGTGAGAAAATTTATTTGTTTTCTAAAGTTTTAGAGT  238

seq1  AGTAACTCATGATCTTTTCTATTAATGTTCCAGGAAGTTTTTCAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCATGATCTTTTCTATTAATGTTCCAGGAAGTTTTTCAAGAAAG  288

seq1  AACAGAGTTTTCTCCTCTGCTGTACACAAAGGCCTGAGTTCATCTGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTTTTCTCCTCTGCTGTACACAAAGGCCTGAGTTCATCTGTACT  338

seq1  GAGATCCTCCACTGCAGTAATTCTCTATTTTGGAGAATGATACAATTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTCCACTGCAGTAATTCTCTATTTTGGAGAATGATACAATTCAA  388

seq1  TTCTCACCATGTCACTAAGATTTGTGAATTGCTTCAGAGAAAAACACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCATGTCACTAAGATTTGTGAATTGCTTCAGAGAAAAACACTAA  438

seq1  AGCTATTATTTGATATACATACATCCTGAAAACATGTAGTCCTGAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTATTTGATATACATACATCCTGAAAACATGTAGTCCTGAAATCT  488

seq1  AATATCTATAATCCAGATGCATTATTAAATTTAGAAAATAAGAATGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTATAATCCAGATGCATTATTAAATTTAGAAAATAAGAATGTGAT  538

seq1  GCCTGGAACAGAAGACCCAGAAATGAACCCACACACTTATGATCACTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAACAGAAGACCCAGAAATGAACCCACACACTTATGATCACTTGA  588

seq1  TCTTTGACAAAGGAGCTAAAACTATCTAGTGGGAAAAAGAGAGCATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACAAAGGAGCTAAAACTATCTAGTGGGAAAAAGAGAGCATTTTC  638

seq1  AACAAATGGTGCGGGAACAATTGGCGGTTATCATGTAGAAGACTGCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGGTGCGGGAACAATTGGCGGTTATCATGTAGAAGACTGCAAAT  688

seq1  TGATCCATTCTTATCTCCTTGTACAAAGCTCAAGTCTAAGTGGATCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATTCTTATCTCCTTGTACAAAGCTCAAGTCTAAGTGGATCAAAG  738

seq1  AACTCCACATAAAACCAGAGATAGTGAAACTTATAGAGGAGAAAGTGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCACATAAAACCAGAGATAGTGAAACTTATAGAGGAGAAAGTGGGG  788

seq1  AAAAGCCTCGAAGATATGGGCACAGGGGAGAAATTCCTGAATAGAACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTCGAAGATATGGGCACAGGGGAGAAATTCCTGAATAGAACAGC  838

seq1  AATGGCTTATGCTGTAAGATCGAGAATCGATAAATGGGACCTCATAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTATGCTGTAAGATCGAGAATCGATAAATGGGACCTCATAAAAT  888

seq1  TGCAAAGCTTCTGTAAGGCAAAAATGCTGTCAATAAGACAAAAACGCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCTTCTGTAAGGCAAAAATGCTGTCAATAAGACAAAAACGCCAT  938

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  988

seq1  ATATCCAATATATATAAAGAACTCAAAAAGGTGCACTCCAAAAAATCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAATATATATAAAGAACTCAAAAAGGTGCACTCCAAAAAATCAAA  1038

seq1  T  1051
      |
seq2  T  1039