BAC Information

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BAC

Clone NameB6Ng01-150H04
Chromosome6 (Build37)
Map Location 26,057,551 - 26,162,871
singlet/doubletdoublet
Overlap geneLOC100041210
Upstream geneGpr37, Pot1a, EG626912
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150H04.bB6Ng01-150H04.g
ACCDH946525DH946526
length1,1251,123
definitionDH946525|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H04, 5' end.DH946526|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,161,739 - 26,162,871)(26,057,551 - 26,058,548)
sequence
ttatggaaaattgtgaatcactatctgatttctagtaatataactcaggt
gctgtagaagagaaacaagtggagagaaagacatctctccaatctccaat
gtatacttttccttacttgacttagttctctttctcagtaacaaattata
taatgcatatagaggctatatctttctgggaatactactactattttgta
atgatcataagttacaaattatattatagaaactttattttcatttctat
agtgatatataatacctatagaaacatatcaagtttcttaaacattggta
acagaatctactctagtctatttaacccaaaagaagtttgtagtggattt
ggtcaatgctgtttttcttctgttaattttcatcccccaaactgcataag
aaaccacatgtccacatgcaagacactgagggaaccttccccgaaatggg
tttgattgctaaataaagaatttggcatccaatggctgggcagggagaca
gaagcactacttttaggattcctgtgaaagcaactgaggaagaaggaagg
agctgacatgcctaggaaagaagagagacaccatgcctgagaggtgcaga
agacagagagcataaccatcacgtatgtgctgggaatgcagccatagagg
gttgtacatcaaggtccagggaagccaagattgaatatagattttagtaa
ttaataatttggaggtggattagacacgtggaagttaggacattgagctg
ttttaggcatatcaaatataaaagctgtgtgtgtctctgttatttgggaa
tataaagctttggggcaggtagcaagaatgcactgtttcctccacccttg
cagctgggatcaaattgatcaaatcctgtgtatgtgcataaaacatatac
tgtatattcctggcattaatctggctcaagagtccaacctgtatacctcc
tagtagcattaattgagtacttttacatacgtttaataaaagtaccagtt
aaaatatagatcctaaatgacgaaactgtagttgggttcactcactatat
agctttgctatccacaacatagcatatctactggtgagtatagattgtga
ccatactgtgactactaaagcttag
gaattccctacaatgggaagaggaaacttatagagcccacattcagtaga
aagtgaagggatggggttgccaccccacggtcaaaactctgacccagaat
tgttcctgtctgaaagaaatgcagggacaaaattggacaagagcctgagt
aaaagaaggtccatctacaggcccaaagtgggatccagctcaaggggagg
ccccaaggcttgacattcttactgaggctatggtgtgcttacaaaaaggg
acttatcattacttccacctgaaagacccagcaagcagctgaaagagtca
gatgcagatatttacacccaaccgatggacagaagctgctgacccctgtg
aatgaattaaagaaaagctggaagaagctgagaagggtgaccctatagga
ggaccagcagtctcaactaacctggacccctgagatctctcagaccatct
aggcagcatacactatatgatatcttctttatttttttctgagttgtttt
gtagttagtagtacaggaatatttttacttttgtggttaaatttattcct
agccattttactattttgatactaagaaaagtgtttcccttaattatttt
ttcctcattgctgctgtatagtgacacaaataaatatatggcctacacgt
cttaactgcaaatataaaatgaaaacaataatatataagcaaaagaattg
taagaaaaaataatttcagcaaaacattgaaaaaaaaaaccaacaaaaaa
gcaaagcacacaaagaacccaaaacaaatctccaaattatcactgagttc
attttttgtttgctgtgtattgctgggcatagaaccttcccttaatgtga
tttgtgtctccagcgaacctccactggtaaaaactaattgttcctatgtg
agcagctatcatttgcagatagcttttgggttggagatggtgacatgtgt
ctatttcccctcctggcttgttctccgcggtctcatctctagctcctcct
tactgcaccaccatttaccttctttggggttttgtaattttgaagtccat
gcaagtattactgttttcctatgcatgttttaattacagaattacattaa
ccacaattagatcattaacttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_26161739_26162871
seq2: B6Ng01-150H04.b_53_1177 (reverse)

seq1  CTAAGCTTTAGTAGTCACAGTAATGGTCAC-ATCTATACTTCACAGTAGA  49
      ||||||||||||||||||||| |||||||| |||||||||   |||||||
seq2  CTAAGCTTTAGTAGTCACAGT-ATGGTCACAATCTATACTCACCAGTAGA  49

seq1  TATGCTATGTTGT-GATAGCATAGCTAATTATTAGTTGAGTTGAACCCAA  98
      ||||||||||||| ||||||| |||||  || ||| |||| |||||||||
seq2  TATGCTATGTTGTGGATAGCAAAGCTA--TA-TAG-TGAG-TGAACCCAA  94

seq1  CTACAGGTTTCGTCATTTAGGAATCCTATATTTTAACTGGTACTTTTATT  148
      ||||| ||||||||||||||||   |||||||||||||||||||||||||
seq2  CTACA-GTTTCGTCATTTAGGA--TCTATATTTTAACTGGTACTTTTATT  141

seq1  AAACGTATGTAAAAGTACTCAATTAATGCTACTAGGAGGTATACAGGTTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTATGTAAAAGTACTCAATTAATGCTACTAGGAGGTATACAGGTTG  191

seq1  GACTCTTTGAGCCAGATTAATGCCAGGAATATACAGTATATGTTTTATGC  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTC-TTGAGCCAGATTAATGCCAGGAATATACAGTATATGTTTTATGC  240

seq1  ACATACACAGGATTTGATCAATTTGATCCCAGCTGCAAGGGTGGAGGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACAGGATTTGATCAATTTGATCCCAGCTGCAAGGGTGGAGGAAA  290

seq1  CAGTGCATTCTTGCTACCTGCCCCAAAGCTTTATATTCCCAAATAACAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATTCTTGCTACCTGCCCCAAAGCTTTATATTCCCAAATAACAGA  340

seq1  GACACACACAGCTTTTATATTTGATATGCCTAAAACAGCTCAATGTCCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACAGCTTTTATATTTGATATGCCTAAAACAGCTCAATGTCCTA  390

seq1  ACTTCCACGTGTCTAATCCACCTCCAAATTATTAATTACTAAAATCTATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACGTGTCTAATCCACCTCCAAATTATTAATTACTAAAATCTATA  440

seq1  TTCAATCTTGGCTTCCCTGGACCTTGATGTACAACCCTCTATGGCTGCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCTTGGCTTCCCTGGACCTTGATGTACAACCCTCTATGGCTGCAT  490

seq1  TCCCAGCACATACGTGATGGTTATGCTCTCTGTCTTCTGCACCTCTCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACATACGTGATGGTTATGCTCTCTGTCTTCTGCACCTCTCAGG  540

seq1  CATGGTGTCTCTCTTCTTTCCTAGGCATGTCAGCTCCTTCCTTCTTCCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTCTCTCTTCTTTCCTAGGCATGTCAGCTCCTTCCTTCTTCCTC  590

seq1  AGTTGCTTTCACAGGAATCCTAAAAGTAGTGCTTCTGTCTCCCTGCCCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTTCACAGGAATCCTAAAAGTAGTGCTTCTGTCTCCCTGCCCAG  640

seq1  CCATTGGATGCCAAATTCTTTATTTAGCAATCAAACCCATTTCGGGGAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGATGCCAAATTCTTTATTTAGCAATCAAACCCATTTCGGGGAAG  690

seq1  GTTCCCTCAGTGTCTTGCATGTGGACATGTGGTTTCTTATGCAGTTTGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCAGTGTCTTGCATGTGGACATGTGGTTTCTTATGCAGTTTGGG  740

seq1  GGATGAAAATTAACAGAAGAAAAACAGCATTGACCAAATCCACTACAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAAATTAACAGAAGAAAAACAGCATTGACCAAATCCACTACAAAC  790

seq1  TTCTTTTGGGTTAAATAGACTAGAGTAGATTCTGTTACCAATGTTTAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGGGTTAAATAGACTAGAGTAGATTCTGTTACCAATGTTTAAGA  840

seq1  AACTTGATATGTTTCTATAGGTATTATATATCACTATAGAAATGAAAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATATGTTTCTATAGGTATTATATATCACTATAGAAATGAAAATA  890

seq1  AAGTTTCTATAATATAATTTGTAACTTATGATCATTACAAAATAGTAGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTATAATATAATTTGTAACTTATGATCATTACAAAATAGTAGTA  940

seq1  GTATTCCCAGAAAGATATAGCCTCTATATGCATTATATAATTTGTTACTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCCAGAAAGATATAGCCTCTATATGCATTATATAATTTGTTACTG  990

seq1  AGAAAGAGAACTAAGTCAAGTAAGGAAAAGTATACATTGGAGATTGGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAACTAAGTCAAGTAAGGAAAAGTATACATTGGAGATTGGAGA  1040

seq1  GATGTCTTTCTCTCCACTTGTTTCTCTTCTACAGCACCTGAGTTATATTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTTCTCTCCACTTGTTTCTCTTCTACAGCACCTGAGTTATATTA  1090

seq1  CTAGAAATCAGATAGTGATTCACAATTTTCCATAA  1133
      |||||||||||||||||||||||||||||||||||
seq2  CTAGAAATCAGATAGTGATTCACAATTTTCCATAA  1125

seq1: chr6_26057551_26058548
seq2: B6Ng01-150H04.g_201_1190

seq1  TGGACAAGAGCCTGAGTAAAAGAAGGTCCATCTACAGGCCCAAAGTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGAGCCTGAGTAAAAGAAGGTCCATCTACAGGCCCAAAGTGGGA  50

seq1  TCCAGCTCAAGGGGAGGCCCCAAGGCTTGACATTCTTACTGAGGCTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCAAGGGGAGGCCCCAAGGCTTGACATTCTTACTGAGGCTATGG  100

seq1  TGTGCTTACAAAAAGGGACTTATCATTACTTCCACCTGAAAGACCCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTACAAAAAGGGACTTATCATTACTTCCACCTGAAAGACCCAGCA  150

seq1  AGCAGCTGAAAGAGTCAGATGCAGATATTTACACCCAACCGATGGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGAAAGAGTCAGATGCAGATATTTACACCCAACCGATGGACAGA  200

seq1  AGCTGCTGACCCCTGTGAATGAATTAAAGAAAAGCTGGAAGAAGCTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGACCCCTGTGAATGAATTAAAGAAAAGCTGGAAGAAGCTGAGA  250

seq1  AGGGTGACCCTATAGGAGGACCAGCAGTCTCAACTAACCTGGACCCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGACCCTATAGGAGGACCAGCAGTCTCAACTAACCTGGACCCCTGA  300

seq1  GATCTCTCAGACCATCTAGGCAGCATACACTATATGATATCTTCTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTCAGACCATCTAGGCAGCATACACTATATGATATCTTCTTTATT  350

seq1  TTTTTCTGAGTTGTTTTGTAGTTAGTAGTACAGGAATATTTTTACTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAGTTGTTTTGTAGTTAGTAGTACAGGAATATTTTTACTTTTG  400

seq1  TGGTTAAATTTATTCCTAGCCATTTTACTATTTTGATACTAAGAAAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAATTTATTCCTAGCCATTTTACTATTTTGATACTAAGAAAAGTG  450

seq1  TTTCCCTTAATTATTTTTTCCTCATTGCTGCTGTATAGTGACACAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTAATTATTTTTTCCTCATTGCTGCTGTATAGTGACACAAATAA  500

seq1  ATATATGGCCTACACGTCTTAACTGCAAATATAAAATGAAAACAATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGGCCTACACGTCTTAACTGCAAATATAAAATGAAAACAATAATA  550

seq1  TATAAGCAAAAGAATTGTAAGAAAAAATAATTTCAGCAAAACATTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCAAAAGAATTGTAAGAAAAAATAATTTCAGCAAAACATTGAAAA  600

seq1  AAAAAACCAACAAAAAAGCAAAGCACACAAAGAACCCAAAACAAATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCAACAAAAAAGCAAAGCACACAAAGAACCCAAAACAAATCTCC  650

seq1  AAATTATCACTGAGTTCATTTTTTGTTTGCTGTGTATTGCTGGGCATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCACTGAGTTCATTTTTTGTTTGCTGTGTATTGCTGGGCATAGA  700

seq1  ACCTTCCCTTAATGTGATTTGTGTCTCCAGCGAACCTCCACTGGTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCTTAATGTGATTTGTGTCTCCAGCGAACCTCCACTGGTAAAAA  750

seq1  CTAATTGTTCCTATGTGAGCAGCTATCATTTGCAGATAGCTTTTGGGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTTCCTATGTGAGCAGCTATCATTTGCAGATAGCTTTTGGGTTG  800

seq1  GAGATGGTGACATGTGTCTATTTCCCCTCCTGGCTTGTTCTCCGCGGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTGACATGTGTCTATTTCCCCTCCTGGCTTGTTCTCCGCGGTCT  850

seq1  CCATCTCTAGCT-CTCCTTACTGCACCAACCATTTTACCTTCTTTGGGGT  899
       ||||||||||| |||||||||||||| |||| |||||||||||||||||
seq2  -CATCTCTAGCTCCTCCTTACTGCACC-ACCA-TTTACCTTCTTTGGGGT  897

seq1  TTTGTTTATATTTTGAAGTCCATTGCAAGGTATTACTGTTTT-CTATGCA  948
      |||||    ||||||||||||| ||||| ||||||||||||| |||||||
seq2  TTTGT---AATTTTGAAGTCCA-TGCAA-GTATTACTGTTTTCCTATGCA  942

seq1  TGTTTTAATTTACAGAATTTACATAAACAACAA-TAGATCATTAAACTTG  997
      |||||||| |||||||| |||||| ||| |||| ||||||||| ||||||
seq2  TGTTTTAA-TTACAGAA-TTACATTAACCACAATTAGATCATT-AACTTG  989

seq1  T  998
      |
seq2  T  990