BAC Information

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BAC

Clone NameB6Ng01-150H06
Chromosome6 (Build37)
Map Location 123,235,848 - 123,236,906
singlet/doubletsinglet
Overlap geneClec4e
Upstream geneLOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d
Downstream geneEG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150H06.bB6Ng01-150H06.g
ACCDH946529DH946530
length9961,053
definitionDH946529|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H06, 5' end.DH946530|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagtactatattgaataggtagggagagagtgggcagccttgtc
tagtccctgattatagtgggattgcttctagtttctcttcatttattttg
atgttggctactggtttgttgtatattgcttttattatatttaggtttgg
gccttgtattcctgatctttccaagacatttatcacgaatgggttttgga
ttttatcaaatgccttctcagcatctaatgggataatcatgtgttttttc
tctttgggtttgtttatatggtggatttggttgatggatttccttatatt
gaactacccctgcatctcttggatgaagcctaattgatcttgaaggatga
tcgttttgatgtgttcttggattctgtttgcgagtatttttgcatcgata
ctcataagcaaaattggtctgaagttctctttctttgttgggtcgttgtg
tggtttaggtatcagagtatttgtggcttcatagaatgaattgagtagag
taccttctgtttctattttgtggaatagtttgaggagaattggaagtagg
tcttctttgaatgtctgatagaactctgcaataaacccatctggtcctgt
gatttttttggttgggaaattattaatgattgctactatttctttagggg
aaatgggagtatttatatcattaatctgatcctgatataactttcctacc
tggtatctgtctagaaaagtgtccattttattcagattttccagtttttt
tgagtatagccttttgtagtagatctgattgtgttttggatttcctcagg
ttctgttgttaaatctccctcttccttttctgattttgttaattaggata
ctgtcccctgtgccctgtagttagtctggctaagttttatcttatcttgt
gatttctcaaaaaccagctcctggatggtggatccatatatagttatttt
tcttccacttggttgatatcaaccctgaatttgattattcttgctg
gaattcttcctctcagaccactatcattaggtcagccttctctatgaaat
gttaacctgcagctgagatacctggtcaggatgaggacacaacaattttc
tttatggatggaaggtttagatgattagacatgactcagaaggtactgca
aacatgtatcaaaaataaaacttattcttcttaagttaggaaagccatca
aatatgaattactctttctttgaggaagggcatcccagtatggagggggg
aatagtgggaaaacattgtgaccactgttggctgttttgttatgagcaca
aaacaggagggcaagggtttcagcactgaaaaggacacaaagcattaacc
acttccctttcctcttacagtaacatatcgcagctctcaaatttccgggc
agaacttacagccacatagaaatattaaggagctttcctgctacagtgag
gcatcaggtataaccatctgcagcacacagaatcattagcaaagtttctg
ggcaatgtctgaagcctttctcctcttaggttcagtcaagaattgctgtc
ctttgaactggaaacattatcaatctagttgttattttttctctacgaca
accttgacctggtcatcaagtttaaagaattgctcagacatgggggctca
cctggtggttatcgacacacaggaagagcaggtaattggccaacaaactc
ttcagtgctgatgccatgatcttttcagatatgttcacctgaacctgtga
tgtgtgagctgcaattgttgccaatggtgtgggctgaaatgtgcccctgt
cactgtttctctgcatgacttacattctctctcaccattgctacagtctt
taaaatgataatttaaatgaggagttcccatatttaactagaatggaggg
agagtacgaatctattctagaataatatttgttgatggatacttgtagaa
gtgagggcaaacatctatacagttgtcttcagctgattaattcttcatga
aaaatagatacatcatatttggtgtcattacattcagagaaaactttgat
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_123235848_123236906
seq2: B6Ng01-150H06.g_67_1119 (reverse)

seq1  TTCATTCAAAG-TTTCTCTGATGTTAATGACAACCACATATGATGTATCT  49
      |||| |||||| |||||||||   ||||||| |||| |||||||||||||
seq2  TTCA-TCAAAGTTTTCTCTGAATGTAATGAC-ACCAAATATGATGTATCT  48

seq1  ATTTATCATGAGAAATTAATCAGCCTGAAGACAACCTGTATTAGATGTTT  99
      |||| ||||||  |||||||||| |||||||||| ||||| |||||||||
seq2  ATTTTTCATGAAGAATTAATCAG-CTGAAGACAA-CTGTA-TAGATGTTT  95

seq1  GCCCTCACTTCTACAAGTATCCATCAACAAAATATTATTCTAGAATTAGA  149
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  GCCCTCACTTCTACAAGTATCCATCAAC-AAATATTATTCTAGAA-TAGA  143

seq1  TTCGTACTCTCCCCTCCATTCTAGTT-AATATGGGAACTCCTCATTTAAA  198
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TTCGTACTCT-CCCTCCATTCTAGTTAAATATGGGAACTCCTCATTTAAA  192

seq1  TTATCATTTTAAAGACTGTAGCAATGGTGAGAGAGAATGTAAGTCATGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTTTAAAGACTGTAGCAATGGTGAGAGAGAATGTAAGTCATGCA  242

seq1  GAGAAACAGTGACAGGGGCACATTTCAGCCCACACCATTGGCAACAATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAGTGACAGGGGCACATTTCAGCCCACACCATTGGCAACAATTG  292

seq1  CAGCTCACACATCACAGGTTCAGGTGAACATATCTGAAAAGATCATGGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACACATCACAGGTTCAGGTGAACATATCTGAAAAGATCATGGCA  342

seq1  TCAGCACTGAAGAGTTTGTTGGCCAATTACCTGCTCTTCCTGTGTGTCGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTGAAGAGTTTGTTGGCCAATTACCTGCTCTTCCTGTGTGTCGA  392

seq1  TAACCACCAGGTGAGCCCCCATGTCTGAGCAATTCTTTAAACTTGATGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACCAGGTGAGCCCCCATGTCTGAGCAATTCTTTAAACTTGATGAC  442

seq1  CAGGTCAAGGTTGTCGTAGAGAAAAAATAACAACTAGATTGATAATGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAAGGTTGTCGTAGAGAAAAAATAACAACTAGATTGATAATGTTT  492

seq1  CCAGTTCAAAGGACAGCAATTCTTGACTGAACCTAAGAGGAGAAAGGCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCAAAGGACAGCAATTCTTGACTGAACCTAAGAGGAGAAAGGCTT  542

seq1  CAGACATTGCCCAGAAACTTTGCTAATGATTCTGTGTGCTGCAGATGGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTGCCCAGAAACTTTGCTAATGATTCTGTGTGCTGCAGATGGTT  592

seq1  ATACCTGATGCCTCACTGTAGCAGGAAAGCTCCTTAATATTTCTATGTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGATGCCTCACTGTAGCAGGAAAGCTCCTTAATATTTCTATGTGG  642

seq1  CTGTAAGTTCTGCCCGGAAATTTGAGAGCTGCGATATGTTACTGTAAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTTCTGCCCGGAAATTTGAGAGCTGCGATATGTTACTGTAAGAG  692

seq1  GAAAGGGAAGTGGTTAATGCTTTGTGTCCTTTTCAGTGCTGAAACCCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAAGTGGTTAATGCTTTGTGTCCTTTTCAGTGCTGAAACCCTTG  742

seq1  CCCTCCTGTTTTGTGCTCATAACAAAACAGCCAACAGTGGTCACAATGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGTTTTGTGCTCATAACAAAACAGCCAACAGTGGTCACAATGTT  792

seq1  TTCCCACTATTCCCCCCTCCATACTGGGATGCCCTTCCTCAAAGAAAGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTATTCCCCCCTCCATACTGGGATGCCCTTCCTCAAAGAAAGAG  842

seq1  TAATTCATATTTGATGGCTTTCCTAACTTAAGAAGAATAAGTTTTATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATATTTGATGGCTTTCCTAACTTAAGAAGAATAAGTTTTATTTT  892

seq1  TGATACATGTTTGCAGTACCTTCTGAGTCATGTCTAATCATCTAAACCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATGTTTGCAGTACCTTCTGAGTCATGTCTAATCATCTAAACCTT  942

seq1  CCATCCATAAAGAAAATTGTTGTGTCCTCATCCTGACCAGGTATCTCAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATAAAGAAAATTGTTGTGTCCTCATCCTGACCAGGTATCTCAGC  992

seq1  TGCAGGTTAACATTTCATAGAGAAGGCTGACCTAATGATAGTGGTCTGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTAACATTTCATAGAGAAGGCTGACCTAATGATAGTGGTCTGAG  1042

seq1  AGGAAGAATTC  1059
      |||||||||||
seq2  AGGAAGAATTC  1053