BAC Information

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BAC

Clone NameB6Ng01-150H13
Chromosome6 (Build37)
Map Location 133,537,914 - 133,705,570
singlet/doubletdoublet
Overlap geneEG626372, LOC100043649, LOC100043653
Upstream genePrp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884
Downstream geneEG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150H13.bB6Ng01-150H13.g
ACCDH946543DH946544
length1,0881,147
definitionDH946543|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H13, 5' end.DH946544|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,537,914 - 133,539,020)(133,704,408 - 133,705,570)
sequence
gaattccacccatataaacaaaacaattgttataagtctaaaaaaaaaag
aacgcatacattatgattgatgaagatctcactataataatcataagata
tctacatttatttacacattatagtgagaatatctggtacattttgtgga
tagatcacctttcaattataaaccttaatgactagaggaaatggtaaaat
aagaggtgggtcatctggaaagcaaacagaatgctgggatagaaaagtca
ctggaagattcacttggaaagatgtgatgagacagatagatggtatatgc
acactggtaagcagctatgtaggggaatgcagatcagaataaatgggcta
tacagccaattaaaaatgacagcctatattcaaaatgacatattttgcct
ttaaaggtatatgtaggttttttgcttcataatctttaagaatgtccata
ataagttaaatattaactaccaccaatcataagtttatgctactatgtag
gtattttgcttaataatccttaagaacttatgtaataatttaatagtaaa
tacaactcaatcataattttatgtatagaaaaagttgaataatacatctt
cttatccaaataaagtatttttttgatttgacagagacagataatgcttt
tttgttgccatgagtcattttgccattagaaagatatattctgctcatga
aggaaagatctggggttatggttggagcagggtttcttgttttctttcca
aaagaagaaaagcacttatctaagggatccagagattactataaaaaaag
aaacatatgaaagtaattttattaagcttattaactatattttgtgttaa
ttttcaacttgttaatacaaaacactaatgccttttgtcagagatagata
aataagccaaatattatagaggcatgtgaattctttaaattaaaagacaa
gcgattaatgccattaagtctaatgtgacatgccataatatatctctgca
tatactgaagataatagtcatttaacatgacatgatgagattgtatcatt
tactctgattagctaccatgtcctgtggcagatgtggg
gaattcaatgctgtgaagacagacccactctcatctagctagctgtatgt
tctttatttccttataaatttctctgttctctcttcctgtagcaattctt
cataaatatttaaattctttttataaatgttcctgattagctcacagatg
tataatggatttgtctctacctttatttctatgtgatgcaatgctccatc
acctaactggtggtcagaggaaaactggcagatatttgttttctccttct
acaatgtggacctcagggattaaagacacacccttattaggcctcatttc
attcttttggaataacaatgagaaagtagatgctttgaaccagcaagaag
gggatcccagggatggaggtgtgctgtcaatcaaagcatcctcaggctct
ttcaggccaagaaagtatccccaggctgtcctaaagattagaatttttct
tgttcaggaaagcttactgggtctctgtatatgctcattgcaattcctga
tgtgaagtagacaacccttgccataacttttaccttgagaagtctgagaa
gatgggtggaaaaatctctaaatgtctagaaaagtatgaatgtgctgcag
ccagataagagaaggagctatgctaatctatcacacatttgtcaaagatt
ttgagtctttatctaagatcaaagcctccatcacagagcagttgtgtcac
attcttcctttaattgctgttatgtggtgcattttggtggaatttatata
gcttcattcccacaaaaagatcagtccccaaagtctcacttctcatcccc
atgacaaactagagtgaacaatcttacccactgttgagaagaaaaaggct
gcaacatttacttctgagtggtctgtttccttcctagagaccattatatc
tctgcttcaaaagattattaatcaatcaaaattattaaaatattctctct
tgacttgaaagatccatcagagagcacattaaaagtgtgttaaatttctt
actttgtaaaattttcataaatcttcactactgatattagaagctgcaag
accatcagggctatttcaagttttcttctaaatgctcaatggaacacatc
ttgcatatctataacttaatgttaatcgaatggaatttcacttgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_133537914_133539020
seq2: B6Ng01-150H13.b_45_1132

seq1  GAATTCCACCCATATAAACAAAACAATTGTTATAAGTCTAAAAAAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCATATAAACAAAACAATTGTTATAAGTCTAAAAAAAAAAG  50

seq1  AACGCATACATTATGATTGATGAAGATCTCACTATAATAATCATAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCATACATTATGATTGATGAAGATCTCACTATAATAATCATAAGATA  100

seq1  TCTACATTTATTTACACATTATAGTGAGAATATCTGGTACATTTTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTTATTTACACATTATAGTGAGAATATCTGGTACATTTTGTGGA  150

seq1  TAGATCACCTTTCAATTATAAACCTTAATGACTAGAGGAAATGGTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCACCTTTCAATTATAAACCTTAATGACTAGAGGAAATGGTAAAAT  200

seq1  AAGAGGTGGGTCATCTGGAAAGCAAACAGAATGCTGGGATAGAAAAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTGGGTCATCTGGAAAGCAAACAGAATGCTGGGATAGAAAAGTCA  250

seq1  CTGGAAGATTCACTTGGAAAGATGTGATGAGACAGATAGATGGTATATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGATTCACTTGGAAAGATGTGATGAGACAGATAGATGGTATATGC  300

seq1  ACACTGGTAAGCAGCTATGTAGGGGAATGCAGATCAGAATAAATGGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTAAGCAGCTATGTAGGGGAATGCAGATCAGAATAAATGGGCTA  350

seq1  TACAGCCAATTAAAAATGACAGCCTATATTCAAAATGACATATTTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAATTAAAAATGACAGCCTATATTCAAAATGACATATTTTGCCT  400

seq1  TTAAAGGTATATGTAGGTTTTTTGCTTCATAATCTTTAAGAATGTCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTATATGTAGGTTTTTTGCTTCATAATCTTTAAGAATGTCCATA  450

seq1  ATAAGTTAAATATTAACTACCACCAATCATAAGTTTATGCTACTATGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAAATATTAACTACCACCAATCATAAGTTTATGCTACTATGTAG  500

seq1  GTATTTTGCTTAATAATCCTTAAGAACTTATGTAATAATTTAATAGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGCTTAATAATCCTTAAGAACTTATGTAATAATTTAATAGTAAA  550

seq1  TACAACTCAATCATAATTTTATGTATAGAAAAAGTTGAATAATACATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTCAATCATAATTTTATGTATAGAAAAAGTTGAATAATACATCTT  600

seq1  CTTATCCAAATAAAGTATTTTTTTGATTTGACAGAGACAGATAATGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCAAATAAAGTATTTTTTTGATTTGACAGAGACAGATAATGCTTT  650

seq1  TTTGTTGCCATGAGTCATTTTGCCATTAGAAAGATATATTCTGCTCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCCATGAGTCATTTTGCCATTAGAAAGATATATTCTGCTCATGA  700

seq1  AGGAAAGATCTGGGGTTATGGTTGGAGCAGGGTTTCTTGTTTTCTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATCTGGGGTTATGGTTGGAGCAGGGTTTCTTGTTTTCTTTCCA  750

seq1  AAAGAAGAAAAGCACTTATCTAAGGGATCCAGAGATTACTATAAAAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAAAGCACTTATCTAAGGGATCCAGAGATTACTATAAAAAAAG  800

seq1  AAACATATGAAAGTAATTTTATTAAGCTTATTAACTATATTTTGTGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATGAAAGTAATTTTATTAAGCTTATTAACTATATTTTGTGTTAA  850

seq1  TTTTCAACTTGTTAATACAAAACACTAATGCCTTTTGTCAGAGATAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACTTGTTAATACAAAACACTAATGCCTTTTGTCAGAGATAGATA  900

seq1  AATAAGCCAAATATTATAGAGGCAATGTGAATTCTTTTAAATTAAAAAGA  950
      ||||||||||||||||||||||| |||||||||| |||||||| ||||||
seq2  AATAAGCCAAATATTATAGAGGC-ATGTGAATTC-TTTAAATT-AAAAGA  947

seq1  CAAGCGATTAATGCCAATTAAGGTCTAAATGTGACATGCCATAATATTAT  1000
      ||||||||||||||| ||||| |||| ||||||||||||||||||| |||
seq2  CAAGCGATTAATGCC-ATTAA-GTCT-AATGTGACATGCCATAATA-TAT  993

seq1  CCTTCTGCATATACTGACAGATAATAGTTCAATTTAACATGACATGGATT  1050
      |  |||||||||||||| ||||||||||   |||||||||||||||   |
seq2  C--TCTGCATATACTGA-AGATAATAGT--CATTTAACATGACATG--AT  1036

seq1  GAGGAATGTATCATTTTACTCTGATTAGCTAACCAATGTCCTGTGGGCAG  1100
      || || ||||||| |||||||||||||||||  | ||||||||| |||||
seq2  GA-GATTGTATCA-TTTACTCTGATTAGCTA--CCATGTCCTGT-GGCAG  1081

seq1  ATGTGGG  1107
      |||||||
seq2  ATGTGGG  1088

seq1: chr6_133704408_133705570
seq2: B6Ng01-150H13.g_67_1213 (reverse)

seq1  TGGCAAGTGAAAATATCCCATACAGATATAACAATAAGATAATAAGAATA  50
      |||||||||||   || |||| | ||| ||||| |||| | |||   |||
seq2  TGGCAAGTGAA---ATTCCATTC-GAT-TAACATTAAG-TTATA--GATA  42

seq1  TGC-AGATGTGTTTTCAATGAGCATTTTATGAAGAAAAACTTGAAAATAG  99
      ||| ||||||| || || |||||||||   |||| |||||||| ||||||
seq2  TGCAAGATGTG-TTCCATTGAGCATTT--AGAAG-AAAACTTG-AAATAG  87

seq1  CCCTGATTGTCTTGCAGCTTCTAATATCAGTAGTGAAGATTTATGAAAAT  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCTGATGGTCTTGCAGCTTCTAATATCAGTAGTGAAGATTTATGAAAA-  136

seq1  TTTTACAAAGTAAGAAATTTAACACACTTTT-ATGTGCTCTCTTGATGGA  198
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TTTTACAAAGTAAGAAATTTAACACACTTTTAATGTGCTCTC-TGATGGA  185

seq1  TTCTTTCAAGTTCAAGAGAGAATATTTTAATAATTTTGATTGATTTAATA  248
       ||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  -TCTTTCAAG-TCAAGAGAGAATATTTTAATAATTTTGATTGA-TTAATA  232

seq1  ATCTTTTTGAAGCAGAGATATAATGGTCTCTAGGAAGGAAACAGACCACT  298
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATC-TTTTGAAGCAGAGATATAATGGTCTCTAGGAAGGAAACAGACCACT  281

seq1  CAGAAGTAAATGTTGCAGCCTTTTTCTTCTCAACAGT-GGTAAGATTGTT  347
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAAGTAAATGTTGCAGCCTTTTTCTTCTCAACAGTGGGTAAGATTGTT  331

seq1  CACTCTAGTTTGTCATGGGGATGAGAAGTGAGACTTTGGGGACTGATCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGTTTGTCATGGGGATGAGAAGTGAGACTTTGGGGACTGATCTT  381

seq1  TTTGTGGGAATGAAGCTATATAAATTCCACCAAAATGCACCACATAACAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGAATGAAGCTATATAAATTCCACCAAAATGCACCACATAACAG  431

seq1  CAATTAAAGGAAGAATGTGACACAACTGCTCTGTGATGGAGGCTTTGATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAGGAAGAATGTGACACAACTGCTCTGTGATGGAGGCTTTGATC  481

seq1  TTAGATAAAGACTCAAAATCTTTGACAAATGTGTGATAGATTAGCATAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAAAGACTCAAAATCTTTGACAAATGTGTGATAGATTAGCATAGC  531

seq1  TCCTTCTCTTATCTGGCTGCAGCACATTCATACTTTTCTAGACATTTAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTTATCTGGCTGCAGCACATTCATACTTTTCTAGACATTTAGA  581

seq1  GATTTTTCCACCCATCTTCTCAGACTTCTCAAGGTAAAAGTTATGGCAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCCACCCATCTTCTCAGACTTCTCAAGGTAAAAGTTATGGCAAG  631

seq1  GGTTGTCTACTTCACATCAGGAATTGCAATGAGCATATACAGAGACCCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCTACTTCACATCAGGAATTGCAATGAGCATATACAGAGACCCAG  681

seq1  TAAGCTTTCCTGAACAAGAAAAATTCTAATCTTTAGGACAGCCTGGGGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTCCTGAACAAGAAAAATTCTAATCTTTAGGACAGCCTGGGGAT  731

seq1  ACTTTCTTGGCCTGAAAGAGCCTGAGGATGCTTTGATTGACAGCACACCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGGCCTGAAAGAGCCTGAGGATGCTTTGATTGACAGCACACCT  781

seq1  CCATCCCTGGGATCCCCTTCTTGCTGGTTCAAAGCATCTACTTTCTCATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTGGGATCCCCTTCTTGCTGGTTCAAAGCATCTACTTTCTCATT  831

seq1  GTTATTCCAAAAGAATGAAATGAGGCCTAATAAGGGTGTGTCTTTAATCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCAAAAGAATGAAATGAGGCCTAATAAGGGTGTGTCTTTAATCC  881

seq1  CTGAGGTCCACATTGTAGAAGGAGAAAACAAATATCTGCCAGTTTTCCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCCACATTGTAGAAGGAGAAAACAAATATCTGCCAGTTTTCCTC  931

seq1  TGACCACCAGTTAGGTGATGGAGCATTGCATCACATAGAAATAAAGGTAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACCAGTTAGGTGATGGAGCATTGCATCACATAGAAATAAAGGTAG  981

seq1  AGACAAATCCATTATACATCTGTGAGCTAATCAGGAACATTTATAAAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATCCATTATACATCTGTGAGCTAATCAGGAACATTTATAAAAAG  1031

seq1  AATTTAAATATTTATGAAGAATTGCTACAGGAAGAGAGAACAGAGAAATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATATTTATGAAGAATTGCTACAGGAAGAGAGAACAGAGAAATT  1081

seq1  TATAAGGAAATAAAGAACATACAGCTAGCTAGATGAGAGTGGGTCTGTCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGAAATAAAGAACATACAGCTAGCTAGATGAGAGTGGGTCTGTCT  1131

seq1  TCACAGCATTGAATTC  1163
      ||||||||||||||||
seq2  TCACAGCATTGAATTC  1147