BAC Information

Click to search

BAC

Clone NameB6Ng01-150J14
Chromosome6 (Build37)
Map Location 49,049,003 - 49,237,699
singlet/doubletdoublet
Overlap geneIgf2bp3, LOC100040626, Tra2a
Upstream geneZfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011
Downstream geneCcdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150J14.bB6Ng01-150J14.g
ACCDH946639DH946640
length8301,083
definitionDH946639|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J14, 5' end.DH946640|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,237,170 - 49,237,699)(49,049,003 - 49,050,098)
sequence
gaattcctgacctgacttcttttgatgatgaattataatatggaaaagta
agacaaattaaccttttacttcccaagctgctttggtcaccatgttttat
cacagcagcgataaccctaagatgcaccctgtttatacagtgctgggatg
gaaaccaaggttttatgcacactaaacaggcagtgtgctaactgaaagac
atccccagtcccagtggtgcagcatttattaaaaagtcttctcaattgtt
tctaggattcactactaaactcatgccatccattttgcaaggcgagcaga
acaacaactcaacatgtgatacaaatgatgtatttgatttagttgcagtg
atgaaaatctgaataactaatgaccatgttggcagacatctgcatttttc
tttaatgtataactgccgcttggctgacaataattgtaaacacatcctga
tttcagagatggcaaaatgaatgatgaaaacaattggtcttagattcttt
tttaaaagactaattcactttgtttttttctgatatacatatatatatat
atatatatatatatatatatatatatatatatataatcttatgtgggggc
tggagaaaatggctcaggatttgagagcactgactgcttttctagaggtc
ctgagtttcaattctcagcaaccacatgggtggctcacaaccattttttg
gctgaacccagctggagcctggggtcctctgaagagatgcttttgatgtg
ggttttgttaagatgagaggaagagttggtggggcatgaactctttcttt
ccggaggtggggggagtaatgggatagtgg
gaattctctgagataaatgccaatagcaaggtctttcttttggaactgaa
catcaatcagatccagagctttgcacagtaaagagctctaccactgagct
atctccctagcccagaacaggaaagaacaggaagaaagcaagcttcttat
cacaatatggtcacctcagtgtggcagagggtcaccttcaccactctcag
agtaaatgccgggaacccttagctcatcccaggacccacaacactccatt
cttcagtgaggtaataacaaaaggaacagacaagggaatgctgaggggtg
gggatgtagctcagttagcagaagcctgcttagcatgtgcatagccctga
gtccaatccccacccaacagaaaactaaacagtgtagtgcatacttgtga
tcctaacacttcagagaaagaagcttgagaccagaaattcaggatcattc
ttggctacacagtgagttcaaggccaacctggattatatgagaccttgtc
tgaaaaaagaacaaaacaaaacaaaactggtaaggctttggtaaatttaa
cagttgtccttaaaaattctagtttcagggttggagagatggctagcagt
tgcgagagcacttgctgcttctctagacagcctgagttcaattcccagaa
tttacatgttgtcttacaatcttttgaaacaactgctccaggggatccaa
aaccctcctctggccttctcatacatatgttacacagacatatgcaagcc
aattattttatatgcatataaaataatttaaaaaatgtatttcccaaagt
agtcccacttaccaagtacaaatagctaagtacagttacatatatactac
ttcctgccttcaagtcctctagtggatgctgaaaggccactgaggcttca
aaccctatacacactgtggtttctctatagctacttctgagatacaccag
agagaaatgcactagacattacaaacagaaaaaagttgtacaagggagtg
tactatgtctcctcaattaatatagcatggtcactatgggtaatcaactg
ggggacttcaatatcagtgattaattagaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49237170_49237699
seq2: B6Ng01-150J14.b_331_869 (reverse)

seq1  CCACAATCCCATT-CT-CCCCCACCTCCGGAAAGAAAGAGTTCATG-CCC  47
      |||| |||||||| || ||||||||||||||||||||||||||||| |||
seq2  CCACTATCCCATTACTCCCCCCACCTCCGGAAAGAAAGAGTTCATGCCCC  50

seq1  ACCAACTCTTCCTCTCATCTTAACAAAACCCACATC-AAAGCATCTCTTC  96
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCAACTCTTCCTCTCATCTTAACAAAACCCACATCAAAAGCATCTCTTC  100

seq1  AGAGGA-CCCAGGCTCCAGCTGGGTTCAGCC-AAAAATGGTTGTGAGCCA  144
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAGGACCCCAGGCTCCAGCTGGGTTCAGCCAAAAAATGGTTGTGAGCCA  150

seq1  -CCATGTGGTTGCTGAGAATTG-AACTCAGGACCTCTAGAAAAGCAGTCA  192
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCATGTGGTTGCTGAGAATTGAAACTCAGGACCTCTAGAAAAGCAGTCA  200

seq1  GTGCTCTCAACTCCTGAGCCA-TTTCTCCAGCCCCCACATAAGATTATAT  241
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  GTGCTCTCAAATCCTGAGCCATTTTCTCCAGCCCCCACATAAGATTATAT  250

seq1  ATATATATATATATATATATATATATATATATATATATATATGTATATCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATGTATATCA  300

seq1  GAAAAAAACAAAGTGAATTAGTCTTTTAAAAAAGAATCTAAGACCAATTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAACAAAGTGAATTAGTCTTTTAAAAAAGAATCTAAGACCAATTG  350

seq1  TTTTCATCATTCATTTTGCCATCTCTGAAATCAGGATGTGTTTACAATTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCATTCATTTTGCCATCTCTGAAATCAGGATGTGTTTACAATTA  400

seq1  TTGTCAGCCAAGCGGCAGTTATACATTAAAGAAAAATGCAGATGTCTGCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCCAAGCGGCAGTTATACATTAAAGAAAAATGCAGATGTCTGCC  450

seq1  AACATGGTCATTAGTTATTCAGATTTTCATCACTGCAACTAAATCAAATA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTCATTAGTTATTCAGATTTTCATCACTGCAACTAAATCAAATA  500

seq1  CATCATTTGTATCACATGTTGAGTTGTTGTTCTGCTCGC  530
      |||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTGTATCACATGTTGAGTTGTTGTTCTGCTCGC  539

seq1: chr6_49049003_49050098
seq2: B6Ng01-150J14.g_68_1150

seq1  GAATTCTCTGAGATAAATGCCAATAGCAAGGTCTTTCTTTTGGAACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGATAAATGCCAATAGCAAGGTCTTTCTTTTGGAACTGAA  50

seq1  CATCAATCAGATCCAGAGCTTTGCACAGTAAAGAGCTCTACCACTGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCAGATCCAGAGCTTTGCACAGTAAAGAGCTCTACCACTGAGCT  100

seq1  ATCTCCCTAGCCCAGAACAGGAAAGAACAGGAAGAAAGCAAGCTTCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTAGCCCAGAACAGGAAAGAACAGGAAGAAAGCAAGCTTCTTAT  150

seq1  CACAATATGGTCACCTCAGTGTGGCAGAGGGTCACCTTCACCACTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATGGTCACCTCAGTGTGGCAGAGGGTCACCTTCACCACTCTCAG  200

seq1  AGTAAATGCCGGGAACCCTTAGCTCATCCCAGGACCCACAACACTCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGCCGGGAACCCTTAGCTCATCCCAGGACCCACAACACTCCATT  250

seq1  CTTCAGTGAGGTAATAACAAAAGGAACAGACAAGGGAATGCTGAGGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGAGGTAATAACAAAAGGAACAGACAAGGGAATGCTGAGGGGTG  300

seq1  GGGATGTAGCTCAGTTAGCAGAAGCCTGCTTAGCATGTGCATAGCCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAGCTCAGTTAGCAGAAGCCTGCTTAGCATGTGCATAGCCCTGA  350

seq1  GTCCAATCCCCACCCAACAGAAAACTAAACAGTGTAGTGCATACTTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATCCCCACCCAACAGAAAACTAAACAGTGTAGTGCATACTTGTGA  400

seq1  TCCTAACACTTCAGAGAAAGAAGCTTGAGACCAGAAATTCAGGATCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACACTTCAGAGAAAGAAGCTTGAGACCAGAAATTCAGGATCATTC  450

seq1  TTGGCTACACAGTGAGTTCAAGGCCAACCTGGATTATATGAGACCTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTACACAGTGAGTTCAAGGCCAACCTGGATTATATGAGACCTTGTC  500

seq1  TGAAAAAAGAACAAAACAAAACAAAACTGGTAAGGCTTTGGTAAATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAGAACAAAACAAAACAAAACTGGTAAGGCTTTGGTAAATTTAA  550

seq1  CAGTTGTCCTTAAAAATTCTAGTTTCAGGGTTGGAGAGATGGCTAGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTCCTTAAAAATTCTAGTTTCAGGGTTGGAGAGATGGCTAGCAGT  600

seq1  TGCGAGAGCACTTGCTGCTTCTCTAGACAGCCTGAGTTCAATTCCCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGAGCACTTGCTGCTTCTCTAGACAGCCTGAGTTCAATTCCCAGAA  650

seq1  TTTACATGTTGTCTTACAATCTTTTGAAACAACTGCTCCAGGGGATCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTTGTCTTACAATCTTTTGAAACAACTGCTCCAGGGGATCCAA  700

seq1  AACCCTCCTCTGGCCTTCTCATACATATGTTACACAGACATATGCAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCTCTGGCCTTCTCATACATATGTTACACAGACATATGCAAGCC  750

seq1  AATTATTTTATATGCATATAAAATAATTTAAAAAATGTATTTCCCAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTATATGCATATAAAATAATTTAAAAAATGTATTTCCCAAAGT  800

seq1  AGTCCCACTTACCAAGTACAAATAGCTAAGTACAGTTACATATATACTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACTTACCAAGTACAAATAGCTAAGTACAGTTACATATATACTAC  850

seq1  TTCCTGCCTTCAAGTCCTCTAGTGGATGCTG-AAGGCCACTGAGGCTTCA  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TTCCTGCCTTCAAGTCCTCTAGTGGATGCTGAAAGGCCACTGAGGCTTC-  899

seq1  AAACCCTATACACACTGTGGTTTCTCTATAGCTACTTCTGAGATACACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTATACACACTGTGGTTTCTCTATAGCTACTTCTGAGATACACCA  949

seq1  GAGAGAAATGCACTAGAACAATAACAAAACAGAAAAAAAGCTGTACAAGG  999
      |||||||||||||||| ||| ||   |||||| ||||||| |||||||||
seq2  GAGAGAAATGCACTAG-ACATTA--CAAACAG-AAAAAAGTTGTACAAGG  995

seq1  GAGTGTACTATGTCTCCTCAATGAATATTAGCAATGGTCAACTATGGGTT  1049
      |||||||||||||||||||||| |||| |||| |||||| |||||||| |
seq2  GAGTGTACTATGTCTCCTCAATTAATA-TAGC-ATGGTC-ACTATGGG-T  1041

seq1  AATTCAAACTGGGGGACTATCATATCAGTGATTTAAATTTAGAAATA  1096
      |||   ||||||||||||   ||||||||||||   | |||||||||
seq2  AAT--CAACTGGGGGACTTCAATATCAGTGATT---AATTAGAAATA  1083