BAC Information

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BAC

Clone NameB6Ng01-150J19
Chromosome6 (Build37)
Map Location 71,152,783 - 71,153,315
singlet/doubletsinglet
Overlap geneFabp1
Upstream geneIgk, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2
Downstream geneSmyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150J19.bB6Ng01-150J19.g
ACCDH946647DH946648
length5271,218
definitionDH946647|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J19, 5' end.DH946648|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ccacccccacccccagctgctgatgattggagtttttctacctcctccct
ctacaagcttgagaaatgggattttatattttattttcagatttttcccc
cagggcagaaccacttaggtaagcttgacattttctttcattcataaata
tgccctatttccatttagcaccaaagaactggagagggacaggacatttg
attccttgtcagttgataccatgcagggaaccaacttcattagcttcatt
gccaggcctttgctcacgggccaccctctgtcttccctgcaggcagtcgt
caagctggaaggtgacaataaaatggtgacaactttcaaaggcataaagt
ccgtgactgaactcaatggagacacaatcaccaatgtaagttgaccctct
ggtcttgccatccagtgcttgaggtgaacggtacggtgtgtttgtgtgag
tgtgtgtgtgtgtgtgtgtgtgtgtgaaggataagagacagctggatgcc
atctctcattcttcacccttttccccc
gaattcacacatagcccatgtctctggccccttgctgctgtccctgcatg
gcaatatcccccttttggaactccccacttttgctcttcactcatcccct
ttccttttttgtaatagtccttgggttttcaagttatctttctttttgtt
tctttgaagaaaaaaaaatactgaattcaggtagtaagacacaagttaca
aaagaggatataagggtagttgtttttctagttctaactctactgtgatc
tttttgttgttgcttttgatggaggataagtgtataaaaatatatttgat
tgtgaaagtataaattctattgtgatcttgcaaagcttctgttccaaatg
gctacgccagttatatagaagtttatgagtttatagtgtttgtgtctggt
gaattttttcaacttctatttaataaaatttcagaaattaaaaataatat
ttaaagtttattatatttacttgtgtgagaatgagagtgcacagatacca
cagtgtgcttgtagaagtcagataatatgcaggggtcactgtgacggcta
ttcctggtcgccaacttgactacatctggaatgaactacattcattctag
aaatggagggcacacctagatccatattatgaggccagaagacacaggct
ttttacccagatcttgatgcgtgggatgacacaaacttttgatctagatc
ttgaagcatagtggccttgaaaagcttaggttcaggcatggtagcacatg
cctttaatcccagaagacagaggcaagtaggtccaatgagttcaaaccca
gcctgatacaaagtcttaaatccaaggatgatggtacaagcctttaatcc
tagcatttaggagatagatacagccatgcagatctgagttcaaggtcaat
ctacagagcaagtttcagacagtgaagcttagcagtgaaggaatggaaaa
cagaaagctgtgataatgtaatagaacaggggtcatgctccagctctagc
agcagcaaaacttggcagcttgtcaccgtgctctgcttaagagtcaagaa
tagaaggactattggtcattgatactgactagctggactagaaatattgt
gattaagaagagaccaggatctgagtttaacctctctagaagaattttcc
cgaagtgttccagaatagctaaagctgtgaccttttgcttgaaccacgtc
cggatggagtgtatgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71152783_71153315
seq2: B6Ng01-150J19.b_45_577

seq1  GAATTCCCACCCCCACCCCCAGCTGCTGATGATTGGAGTTTTTCTACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACCCCCACCCCCAGCTGCTGATGATTGGAGTTTTTCTACCTC  50

seq1  CTCCCTCTACAAGCTTGAGAAATGGGATTTTATATTTTATTTTCAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTACAAGCTTGAGAAATGGGATTTTATATTTTATTTTCAGATTT  100

seq1  TTCCCCCAGGGCAGAACCACTTAGGTAAGCTTGACATTTTCTTTCATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCAGGGCAGAACCACTTAGGTAAGCTTGACATTTTCTTTCATTCA  150

seq1  TAAATATGCCCTATTTCCATTTAGCACCAAAGAACTGGAGAGGGACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGCCCTATTTCCATTTAGCACCAAAGAACTGGAGAGGGACAGGA  200

seq1  CATTTGATTCCTTGTCAGTTGATACCATGCAGGGAACCAACTTCATTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATTCCTTGTCAGTTGATACCATGCAGGGAACCAACTTCATTAGC  250

seq1  TTCATTGCCAGGCCTTTGCTCACGGGCCACCCTCTGTCTTCCCTGCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCCAGGCCTTTGCTCACGGGCCACCCTCTGTCTTCCCTGCAGGC  300

seq1  AGTCGTCAAGCTGGAAGGTGACAATAAAATGGTGACAACTTTCAAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTCAAGCTGGAAGGTGACAATAAAATGGTGACAACTTTCAAAGGCA  350

seq1  TAAAGTCCGTGACTGAACTCAATGGAGACACAATCACCAATGTAAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCCGTGACTGAACTCAATGGAGACACAATCACCAATGTAAGTTGA  400

seq1  CCCTCTGGTCTTGCCATCCAGTGCTTGAGGTGAACGGTACGGTGTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGTCTTGCCATCCAGTGCTTGAGGTGAACGGTACGGTGTGTTTG  450

seq1  TGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGGATAAGAGACAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGGATAAGAGACAGCTG  500

seq1  GATGCCATCTCTCATTCTTCACCCTTTCCCCCC  533
      ||||||||||||||||||||||||||| |||||
seq2  GATGCCATCTCTCATTCTTCACCCTTTTCCCCC  533