BAC Information

Click to search

BAC

Clone NameB6Ng01-151A08
Chromosome6 (Build37)
Map Location 58,581,801 - 58,583,001
singlet/doubletsinglet
Overlap geneAbcg2
Upstream geneHerc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954
Downstream geneHerc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151A08.bB6Ng01-151A08.g
ACCDH946950DH946951
length1,1851,239
definitionDH946950|Mus musculus domesticus DNA, BAC clone: B6Ng01-151A08, 5' end.DH946951|Mus musculus domesticus DNA, BAC clone: B6Ng01-151A08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgagggaaaaacaaaaaataaaaaacaaaaaaaaacacaaaccg
ctctgaccttgtcgatagctgtgacgttaatcgctggcccataaattcaa
aatgtactattgctttgctgaccaaatcataataacccactatgggggca
agcgaagtgagttaccaggccaaaggtagtcactaagcaaaccaacaaat
ttctgaaaaggttacttgctacacaaattagaataagccagctaccctgt
tgctcaaatttgtcccttacaaggtataaaaagtgtgttctttctttgtt
ctgggtctctcctctggcctgcgtgctgagataagagtccccagcatgta
ggattaataaaattcctcatgctgtttggagcgatagccatctgttgtct
ttgtgattgagggtcttttgaggaactccccacaggataaagctgtcaat
ataggcggtcctttctagaaccatttcaagcttgtagaggttgcttgtat
tccttgttcatgggctcactcctccatcttcaaagctatcacaccacatc
tctctgtgtgttcctgtttcccatctctcactcttttagctgttgctctc
tttcacttacaatgataaatagccttgaactcacctcaccatgtaggcta
acacacagaccctctggggattaagaagcagacatcttgggaaggcataa
atttcacctatcacaaggtcctaaaaaaatggaagcataagcaaatgtgg
gaagcatctatgactcactgaattgggaggaagattactttaagtgaaga
tatttatgataaaactgagttagaaaggcaattttggagcttctcctatc
tgatagaaagcaaagctttctgggaataaagctgtcataaatttcttctt
aggagaaaatcctcgacaggaagagggttaaccacacctacctgaatgag
tggctgcatgagcaggcatcatagtcgtggtgcctaccatctatttctct
aaatgctcatttttttttctcatagaagcactttctccacatccctctca
cttacgtctgcatacaaatctactctagctgctcgaaagagctttcattg
atagtttcctgtatgcacagaagaacacatctcatctgctgttatttaat
ctgtgtactaggatatttgagttcccaaactaaga
gaattctgttgtttgttgtaaaaagaaaaaagtcgggaaaatggagtatg
atcatgaatttaagagtattaatagaggtattcaaccaatggtttcttta
cagcctggactttctttacctactttgctaccaagatcctagcatataat
aataattgacatgaaagactgcaatttttataataaccttgcgtgagcat
gatagggaaaggtttgctttctctgaaaaagagttgtccaataaaaagtt
accactagaagttacttccacagggaacattaaattgtctaactttataa
tcaatattttgtgcaacaaccattagaaataattgttaagcaatttcctt
aatttattatcattatatgagtgacattttgccagctgattctgataaat
atgttttagagaatatgcttaaggaaatacaaagtattctgccatgatgg
aagtcgtgaaaaaaatacaaagaagacattcactgggttaattgggtttt
taaatcagttcacaaatatttgaatagaaaaatgtacatatcagtaggaa
ccaattgaaaactcaacgattttcaaaaattaatgggagatattaagtga
ctgaggactacctttggattatgtccaagtgagttaagcaattttttcaa
tcaatacaaggagattcaaatttatccagtctaatgtgtctaacagttga
agaagtaaaggtgcaatctcttgtagaccaaagactgaaagatgcatatg
tagtttagtagttagtgttgatactaaatttgattgtattttggtcattt
tgccttcaattcataatactttaaactcattatgcaaaggggagatatta
tggaatggattttcttagttcatacacaatgtaaaaatgaggacatttag
aaaggacttctaaattatttataaaaggcagaataagtctatgtcaattg
tcaggaaaagatccagccaaattggagcactctactaattctgtgactat
gccattatggttttattatgaagattggcaagaagctttctagttactat
ttgggagaaattcataacaattgttctggcaaaccaacctatacaggtta
taaaatggactaatggattctcccacaatatagtaaataacaccaatttg
ggagcaccagcatttatacagatgcaccaaagtgacatgctgaatagagt
ccgacaaaccagtgtagatgtgggattcaatagacttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_58581801_58583001
seq2: B6Ng01-151A08.b_47_1231 (reverse)

seq1  TCTTTGTTTGGGAACCTTCAAATGATCCTAGGGTACACAGATTAAATAAC  50
      |||| ||||||||||  |||||| ||||||  ||||||||||||||||||
seq2  TCTTAGTTTGGGAAC--TCAAAT-ATCCTA--GTACACAGATTAAATAAC  45

seq1  AGGCAGGAAATGAAGATGTGT--CTCTGTGCATACAGGAACATACAAATG  98
      | ||||   ||| ||||||||   ||||||||||||||||  ||  ||||
seq2  A-GCAG---ATG-AGATGTGTTCTTCTGTGCATACAGGAAACTATCAATG  90

seq1  AAAGCTCTTTCCGAGCAGCTAGAGGTAGGAATTTGTATGCAGACGTAAGT  148
      |||||||||| |||||||||||| ||||  ||||||||||||||||||||
seq2  AAAGCTCTTT-CGAGCAGCTAGA-GTAG--ATTTGTATGCAGACGTAAGT  136

seq1  GGAGAAGGGATGTGGAGAAAGTGCTTCTATGGAGAAAAAAAAATGAGCAT  198
       ||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  -GAG-AGGGATGTGGAGAAAGTGCTTCTAT-GAGAAAAAAAAATGAGCAT  183

seq1  TTAGAGAAATAGATGGTAGGCACCAACGACTATGATGCCTGCTCATGCAG  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAGAGAAATAGATGGTAGGCACC-ACGACTATGATGCCTGCTCATGCAG  232

seq1  CCACTCATTCAGGTAGGTGTGGTTAACCCTCTTCCTGTCGAGGATTTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATTCAGGTAGGTGTGGTTAACCCTCTTCCTGTCGAGGATTTTCT  282

seq1  CCTAAGAAGAAATTTATGACAGCTTTATTCCCAGAAAGCTTTGCTTTCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAAGAAATTTATGACAGCTTTATTCCCAGAAAGCTTTGCTTTCTA  332

seq1  TCAGATAGGAGAAGCTCCAAAATTGCCTTTCTAACTCAGTTTTATCATAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGGAGAAGCTCCAAAATTGCCTTTCTAACTCAGTTTTATCATAA  382

seq1  ATATCTTCACTTAAAGTAATCTTCCTCCCAATTCAGTGAGTCATAGATGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCACTTAAAGTAATCTTCCTCCCAATTCAGTGAGTCATAGATGC  432

seq1  TTCCCACATTTGCTTATGCTTCCATTTTTTTAGGACCTTGTGATAGGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACATTTGCTTATGCTTCCATTTTTTTAGGACCTTGTGATAGGTGA  482

seq1  AATTTATGCCTTCCCAAGATGTCTGCTTCTTAATCCCCAGAGGGTCTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGCCTTCCCAAGATGTCTGCTTCTTAATCCCCAGAGGGTCTGTG  532

seq1  TGTTAGCCTACATGGTGAGGTGAGTTCAAGGCTATTTATCATTGTAAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCTACATGGTGAGGTGAGTTCAAGGCTATTTATCATTGTAAGTG  582

seq1  AAAGAGAGCAACAGCTAAAAGAGTGAGAGATGGGAAACAGGAACACACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGCAACAGCTAAAAGAGTGAGAGATGGGAAACAGGAACACACAG  632

seq1  AGAGATGTGGTGTGATAGCTTTGAAGATGGAGGAGTGAGCCCATGAACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTGGTGTGATAGCTTTGAAGATGGAGGAGTGAGCCCATGAACAA  682

seq1  GGAATACAAGCAACCTCTACAAGCTTGAAATGGTTCTAGAAAGGACCGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACAAGCAACCTCTACAAGCTTGAAATGGTTCTAGAAAGGACCGCC  732

seq1  TATATTGACAGCTTTATCCTGTGGGGAGTTCCTCAAAAGACCCTCAATCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGACAGCTTTATCCTGTGGGGAGTTCCTCAAAAGACCCTCAATCA  782

seq1  CAAAGACAACAGATGGCTATCGCTCCAAACAGCATGAGGAATTTTATTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAACAGATGGCTATCGCTCCAAACAGCATGAGGAATTTTATTAA  832

seq1  TCCTACATGCTGGGGACTCTTATCTCAGCACGCAGGCCAGAGGAGAGACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATGCTGGGGACTCTTATCTCAGCACGCAGGCCAGAGGAGAGACC  882

seq1  CAGAACAAAGAAAGAACACACTTTTTATACCTTGTAAGGGACAAATTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAAGAAAGAACACACTTTTTATACCTTGTAAGGGACAAATTTGA  932

seq1  GCAACAGGGTAGCTGGCTTATTCTAATTTGTGTAGCAAGTAACCTTTTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGGGTAGCTGGCTTATTCTAATTTGTGTAGCAAGTAACCTTTTCA  982

seq1  GAAATTTGTTGGTTTGCTTAGTGACTACCTTTGGCCTGGTAACTCACTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGTTGGTTTGCTTAGTGACTACCTTTGGCCTGGTAACTCACTTC  1032

seq1  GCTTGCCCCCATAGTGGGTTATTATGATTTGGTCAGCAAAGCAATAGTAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCCCCATAGTGGGTTATTATGATTTGGTCAGCAAAGCAATAGTAC  1082

seq1  ATTTTGAATTTATGGGCCAGCGATTAACGTCACAGCTATCGACAAGGTCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAATTTATGGGCCAGCGATTAACGTCACAGCTATCGACAAGGTCA  1132

seq1  GAGCGGTTTGTGTTTTTTTTTGTTTTTTATTTTTTGTTTTTCCCTCAGAA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGTTTGTGTTTTTTTTTGTTTTTTATTTTTTGTTTTTCCCTCAGAA  1182

seq1  TTC  1201
      |||
seq2  TTC  1185