BAC Information

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BAC

Clone NameB6Ng01-151C04
Chromosome6 (Build37)
Map Location 83,033,179 - 83,217,911
singlet/doubletdoublet
Overlap geneLbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik
Upstream geneTmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1
Downstream geneMthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151C04.bB6Ng01-151C04.g
ACCDH947036DH947037
length2121,113
definitionDH947036|Mus musculus domesticus DNA, BAC clone: B6Ng01-151C04, 5' end.DH947037|Mus musculus domesticus DNA, BAC clone: B6Ng01-151C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,033,179 - 83,033,390)(83,216,797 - 83,217,911)
sequence
gaattctgcgaaggacgtggctacagctcagctacagagagatcaatctt
agaggacttggggttgaatacgatcaaaatacaaattatgaaattttcaa
aaacaatttttatataaaatttaagtcaatcagatagcagaacagcagct
tgtgtccttcagtcccaccccgagtttaaaaagtggtggtggtggtggtg
gtggtggtagtg
gaattccaatacaggggaaccccagaacaagctagaacaagactatctaa
atctgtctgcagcattgggttcactgagagattctgcctcagtgaataag
gtggagagcaaagaaaaattccctggtgccaccgtcagggcctctacata
tgcacccacacatattcagacgtgaacgcacattgcacataccacagaaa
gacagaaaatgattcagtaatatgcatccccctacacagtccccactcct
gactttagagctgttcataagtggccgtgttggcttctgatttgctacag
ggagaagaaaatgccggatgtggagtaccctctgctgctcttatcccgaa
cacacacctcttgtcagctgagggaactttcttgggtggctcaattctga
tgtttgggtcccactctccagggggaaggacaatgacctcgtctagaaat
tcatcaatccctgcgatcagatcttctcggttccgagctttataagccac
atcgctgaatagctggtgaggaatggagaaggataaaaaagcagaaagga
gaaaagagggctcagtcctcccctcctgggagtgagcacatcacagctat
ctttaaaggaaccaattctagccattttctcaggatgcccacttggttcc
agtgggtggataaggacaaaggacagtaagggaaatagggaacaatagga
aagagccagttccaagagcaggcggtcatctgagatcagaaacctatgcc
tcccgagatacattagagacaagcaagcatagggaatagcttaccaacct
gggactccctcttaatgtgggctacctacattcacctcttctatagtgca
tttagcagctagaacctttatactatactatgtacacatttgccttctgc
acatatacctagcaattattagcaacctagggccctcacctgcactgaag
ctgtacacatacttccactctgaacaaggaaactgtctcctcccctaaca
cattagcatagataaattctacctcatgataatctccttgtgtctgataa
gaaactagggacttcttgagcttaggttttttataataaatcaacttctt
ttacctattgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83033179_83033390
seq2: B6Ng01-151C04.b_44_255

seq1  GAATTCTGCGAAGGACGTGGCTACAGCTCAGCTACAGAGAGATCAATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCGAAGGACGTGGCTACAGCTCAGCTACAGAGAGATCAATCTT  50

seq1  AGAGGACTTGGGGTTGAATACGATCAAAATACAAATTATGAAATTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTTGGGGTTGAATACGATCAAAATACAAATTATGAAATTTTCAA  100

seq1  AAACAATTTTTATATAAAATTTAAGTCAATCAGATAGCAGAACAGCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTTTATATAAAATTTAAGTCAATCAGATAGCAGAACAGCAGCT  150

seq1  TGTGTCCTTCAGTCCCACCCCGAGTTTAAAAAGTGGTGGTGGTGGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTTCAGTCCCACCCCGAGTTTAAAAAGTGGTGGTGGTGGTGGTG  200

seq1  GTGGTGGTAGTG  212
      ||||||||||||
seq2  GTGGTGGTAGTG  212

seq1: chr6_83216797_83217911
seq2: B6Ng01-151C04.g_71_1183 (reverse)

seq1  TTGC-ATAGGTATAAGAAGTTTGATTTATTAT-AAAAACCT-AGCTCAGG  47
      |||| ||||||| |||||| |||||||||||| |||||||| |||||| |
seq2  TTGCAATAGGTAAAAGAAG-TTGATTTATTATAAAAAACCTAAGCTCAAG  49

seq1  ACGTCCCTAGTTTCTTATCCAGACACAAGGAGAGTATCATTGAGTAGAAT  97
      | |||||||||||||||| |||||||||||||| ||||||   |||||||
seq2  AAGTCCCTAGTTTCTTAT-CAGACACAAGGAGATTATCATGAGGTAGAAT  98

seq1  TTATCTATGTTTGATGGTTGTTAAGGGGAGGAGACAGTTCCATTGTTCAG  147
      |||||||||  | |||  |||| |||||||||||||||| | ||||||||
seq2  TTATCTATG-CTAATG--TGTT-AGGGGAGGAGACAGTTTCCTTGTTCAG  144

seq1  AGTGG-AGTGTGTGTACAGC-TCAGTGCAGGTGAGGGCCCTAGGTTGCTA  195
      ||||| ||| |||||||||| |||||||||||||||||||||||||||||
seq2  AGTGGAAGTATGTGTACAGCTTCAGTGCAGGTGAGGGCCCTAGGTTGCTA  194

seq1  ATAAATTGCTAGGTATATGTGCAGAAAGGCATATGTGTACATAGTATAGT  245
      || ||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  AT-AATTGCTAGGTATATGTGCAG-AAGGCAAATGTGTACATAGTATAGT  242

seq1  ATAAAGGTTCTAGGCTGCTAAATGCACTATTAGAAGAGGTGAATGTAGGT  295
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  ATAAAGGTTCTA-GCTGCTAAATGCACTA-TAGAAGAGGTGAATGTAGGT  290

seq1  AGCCCACATTAAGA-GGAGTCCCAGGTTGGTAAGCTATTCCCTATGCTTG  344
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCCCACATTAAGAGGGAGTCCCAGGTTGGTAAGCTATTCCCTATGCTTG  340

seq1  CTTGTCTCTAATGTATCTC-GGAGGCATAGGTTTCTGATCTCAGATGACC  393
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTGTCTCTAATGTATCTCGGGAGGCATAGGTTTCTGATCTCAGATGACC  390

seq1  GCCTGCTCTTGGAACTGGCTCTTTCCTATTGTTCCCTATTTCCCTTACTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCTTGGAACTGGCTCTTTCCTATTGTTCCCTATTTCCCTTACTG  440

seq1  TCCTTTGTCCTTATCCACCCACTGGAACCAAGTGGGCATCCTGAG-AAAT  492
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCTTTGTCCTTATCCACCCACTGGAACCAAGTGGGCATCCTGAGAAAAT  490

seq1  GGCTAGAATTGGTTCCTTTAAAGATAGCTGTGATGTGCTCACTCCCAGGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAATTGGTTCCTTTAAAGATAGCTGTGATGTGCTCACTCCCAGGA  540

seq1  GGGGAGGACTGAGCCCTCTTTTCTCCTTTCTGCTTTTTTATCCTTCTCCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGACTGAGCCCTCTTTTCTCCTTTCTGCTTTTTTATCCTTCTCCA  590

seq1  TTCCTCACCAGCTATTCAGCGATGTGGCTTATAAAGCTCGGAACCGAGAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACCAGCTATTCAGCGATGTGGCTTATAAAGCTCGGAACCGAGAA  640

seq1  GATCTGATCGCAGGGATTGATGAATTTCTAGACGAGGTCATTGTCCTTCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATCGCAGGGATTGATGAATTTCTAGACGAGGTCATTGTCCTTCC  690

seq1  CCCTGGAGAGTGGGACCCAAACATCAGAATTGAGCCACCCAAGAAAGTTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGAGTGGGACCCAAACATCAGAATTGAGCCACCCAAGAAAGTTC  740

seq1  CCTCAGCTGACAAGAGGTGTGTGTTCGGGATAAGAGCAGCAGAGGGTACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTGACAAGAGGTGTGTGTTCGGGATAAGAGCAGCAGAGGGTACT  790

seq1  CCACATCCGGCATTTTCTTCTCCCTGTAGCAAATCAGAAGCCAACACGGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCGGCATTTTCTTCTCCCTGTAGCAAATCAGAAGCCAACACGGC  840

seq1  CACTTATGAACAGCTCTAAAGTCAGGAGTGGGGACTGTGTAGGGGGATGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATGAACAGCTCTAAAGTCAGGAGTGGGGACTGTGTAGGGGGATGC  890

seq1  ATATTACTGAATCATTTTCTGTCTTTCTGTGGTATGTGCAATGTGCGTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTGAATCATTTTCTGTCTTTCTGTGGTATGTGCAATGTGCGTTC  940

seq1  ACGTCTGAATATGTGTGGGTGCATATGTAGAGGCCCTGACGGTGGCACCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGAATATGTGTGGGTGCATATGTAGAGGCCCTGACGGTGGCACCA  990

seq1  GGGAATTTTTCTTTGCTCTCCACCTTATTCACTGAGGCAGAATCTCTCAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTTTTCTTTGCTCTCCACCTTATTCACTGAGGCAGAATCTCTCAG  1040

seq1  TGAACCCAATGCTGCAGACAGATTTAGATAGTCTTGTTCTAGCTTGTTCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCAATGCTGCAGACAGATTTAGATAGTCTTGTTCTAGCTTGTTCT  1090

seq1  GGGGTTCCCCTGTGTTGGAATTC  1115
      ||||||||||||| |||||||||
seq2  GGGGTTCCCCTGTATTGGAATTC  1113