BAC Information

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BAC

Clone NameB6Ng01-151C15
Chromosome6 (Build37)
Map Location 98,274,657 - 98,365,053
singlet/doubletdoublet
Overlap geneGm765
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, LOC666019
Downstream geneLOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151C15.bB6Ng01-151C15.g
ACCDH947058DH947059
length1,1641,231
definitionDH947058|Mus musculus domesticus DNA, BAC clone: B6Ng01-151C15, 5' end.DH947059|Mus musculus domesticus DNA, BAC clone: B6Ng01-151C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,363,887 - 98,365,053)(98,274,657 - 98,275,897)
sequence
gaattctactgaagaaggtgtcatagaaatatcctgatatttagcttttt
attcgatttatcccaattaacaaatacttgttttctgttttaattgtgtt
cagctagaaaagtggcaggaattgcctttcataagctaaattgtcactgg
gtatcccacagcttgtaaaaaatagcttttcagtaggaattaatattttc
tggctctatattattattttcccactactctttgttgcccatgttcccac
catgccagcctttgctcccattttatttgttagtgttaaatatatttctt
tggttacatcaaccagaataaagagtaatgtcaagtacaaagtcaataca
tcccaattttgtcttctgtcatttgttagcaactaaaggagaaaagtatt
agccccatttctatatgatagttaatgctaacaggaaacagtgttttgga
gccacattacaatgttggtagcagaggcaacctgtgcatgttggattgct
accagagcatacttttaactcttcctttaccttaaatattcttcagaatg
gctttgtttgttggagacagaaacttggtctcctaagatagtcatgacct
catatgagttttataagtgagcagagtagcatgggtagggcagtaaattt
gacagataaattacaaggaagaaagtctttctaccaatctttaagtaaat
gttcctcaataagagctatcacaaattactgtgactaatatcacagatgc
tcttcaatggtgtgtgcatctacatgtttagttagaaatataaaaatgct
aatgacgaaaaatgattctcttttggtcgaggcctagcagaatggggtat
acacatccctttgaatcgttgggaagagatatgtggaaaaatgagggtgg
atgagtgatccacatcaaggctcttctcataccgagtacacgcctagact
aactggtatatattattagactattatatacgtatataaagaaatgaaca
gatgtccttattttatgtaaattcaccaaattcttggtatttgtcttgat
acaggtatcatgaatttgtttcttgagaacccatttttagaaaggattta
attccaggcattcccaaggcgatgttggaatccaatttaagagcgaacat
ttataatactctac
gaattccaaagagagtctcaggacaggagcaggaagagagttagccaagg
gaagaaggatttcgcaaatgccagcccccgggattactgagacgattaac
gtaatatcaaggaggcactttagggactaagaggatgacctttgacttca
tgtccatttttctctaggattccgactggtttgagaacctattctcatgt
gctcagtgctctcttatttcttagtctctctgctcttcagaaatgtcagt
tattccaaaatgatatcgtcccactattcaaaaatcagtttatgagactt
taaaatttccttgaatgaagtttcattgatttcactagtgccctttgctt
ccctcctctccctactgtcatctctccatctgggcttcttaactgacttc
tataatgaaaggacaggaaatccctgttcacgttcatttaacgatagtta
cacgcattcaccactgacaaacactgcaataagtgttcttgatgtatgaa
aacagataaactgcagttcctcatggaagaatgagaaaggagccagaaaa
taactagaaaacagttataagcaatgatagttactgctgggagcgggtca
tgctccattcataactgctgagtctgcctgagacctgggtcagacagctt
tcaactaacagaacaacctaattcagacgtgcttaaacataaagttactt
atcactaattagtattaagcagcagaaaagccaaatgtctcaacagtact
tttaagaatgccttttattctttatcctatggagttttttgtttgtttgt
ttgttttgttttttgtttttgtttttcgagacagggtttctctgtatagc
cctggctgtcctggagctcactttgtagaccaggctggcctcgaactcaa
aatccacctatggagtttaagttagtgagccactttgtggctcagtcctc
tcctgatgataataaactgctttccagcttcaagaatcttatgaaacctt
gacaatattccacagtgaagactctcaaacattctctcttaaccacaaac
atgaaaaacaaaataaaaccgacacctcctacacccagaaatgaaacata
cagtttttactaggaatgccacaggtagacagtatatcacattctcccga
aattccccaaggccactaattgggagtactggaccactatcttaacgtgc
actgatctgaggctaaccattcacaagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98363887_98365053
seq2: B6Ng01-151C15.b_46_1209 (reverse)

seq1  GTAGAGTATTATAAATG-TCGCTCTTAATTTGAATTTCAAACATCGCCTT  49
      ||||||||||||||||| |||||||||| ||| | ||| |||||||||||
seq2  GTAGAGTATTATAAATGTTCGCTCTTAAATTGGA-TTCCAACATCGCCTT  49

seq1  -GGAATGCTTGAATTAAAATCCTGTCTAAAAATGGGTTCTTCAAGAAACA  98
       ||||||| || | | ||||||| ||||||||||||||| ||||||||||
seq2  GGGAATGCCTGGAATTAAATCCTTTCTAAAAATGGGTTC-TCAAGAAACA  98

seq1  AATTCATGATACCTGTATCAAGACAAATACCAAGAATTTGGTGAATTTTA  148
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTCATGATACCTGTATCAAGACAAATACCAAGAATTTGGTGAA-TTTA  147

seq1  CATAAAATAAGGACATCTGTTCATTTCTTTATATACGTATATAATAGTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATAAAATAAGGACATCTGTTCATTTCTTTATATACGTATATAATAGTC-  196

seq1  TAATAATATATACCAGTTAGTTCTAGGCGTGTACTCGGTATGAGAAGAGC  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAATAATATATACCAGTTAG-TCTAGGCGTGTACTCGGTATGAGAAGAGC  245

seq1  CTTGATGTGGATCACTCATCCACCCTCATTTTTCCACATATCTCTTCCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGTGGATCACTCATCCACCCTCATTTTTCCACATATCTCTTCCCA  295

seq1  ACGATTCAAAGGGATGTGTATACCCCATTCTGCTAGGCCTCGACCAAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTCAAAGGGATGTGTATACCCCATTCTGCTAGGCCTCGACCAAAAG  345

seq1  AGAATCATTTTTCGTCATTAGCATTTTTATATTTCTAACTAAACATGTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATTTTTCGTCATTAGCATTTTTATATTTCTAACTAAACATGTAG  395

seq1  ATGCACACACCATTGAAGAGCATCTGTGATATTAGTCACAGTAATTTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACACCATTGAAGAGCATCTGTGATATTAGTCACAGTAATTTGTG  445

seq1  ATAGCTCTTATTGAGGAACATTTACTTAAAGATTGGTAGAAAGACTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTTATTGAGGAACATTTACTTAAAGATTGGTAGAAAGACTTTCT  495

seq1  TCCTTGTAATTTATCTGTCAAATTTACTGCCCTACCCATGCTACTCTGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTAATTTATCTGTCAAATTTACTGCCCTACCCATGCTACTCTGCT  545

seq1  CACTTATAAAACTCATATGAGGTCATGACTATCTTAGGAGACCAAGTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATAAAACTCATATGAGGTCATGACTATCTTAGGAGACCAAGTTTC  595

seq1  TGTCTCCAACAAACAAAGCCATTCTGAAGAATATTTAAGGTAAAGGAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAACAAACAAAGCCATTCTGAAGAATATTTAAGGTAAAGGAAGA  645

seq1  GTTAAAAGTATGCTCTGGTAGCAATCCAACATGCACAGGTTGCCTCTGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGTATGCTCTGGTAGCAATCCAACATGCACAGGTTGCCTCTGCT  695

seq1  ACCAACATTGTAATGTGGCTCCAAAACACTGTTTCCTGTTAGCATTAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATTGTAATGTGGCTCCAAAACACTGTTTCCTGTTAGCATTAACT  745

seq1  ATCATATAGAAATGGGGCTAATACTTTTCTCCTTTAGTTGCTAACAAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATAGAAATGGGGCTAATACTTTTCTCCTTTAGTTGCTAACAAATG  795

seq1  ACAGAAGACAAAATTGGGATGTATTGACTTTGTACTTGACATTACTCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGACAAAATTGGGATGTATTGACTTTGTACTTGACATTACTCTTT  845

seq1  ATTCTGGTTGATGTAACCAAAGAAATATATTTAACACTAACAAATAAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTTGATGTAACCAAAGAAATATATTTAACACTAACAAATAAAAT  895

seq1  GGGAGCAAAGGCTGGCATGGTGGGAACATGGGCAACAAAGAGTAGTGGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAAAGGCTGGCATGGTGGGAACATGGGCAACAAAGAGTAGTGGGA  945

seq1  AAATAATAATATAGAGCCAGAAAATATTAATTCCTACTGAAAAGCTATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAATATAGAGCCAGAAAATATTAATTCCTACTGAAAAGCTATTT  995

seq1  TTTACAAGCTGTGGGATACCCAGTGACAATTTAGCTTATGAAAGGCAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGCTGTGGGATACCCAGTGACAATTTAGCTTATGAAAGGCAATT  1045

seq1  CCTGCCACTTTTCTAGCTGAACACAATTAAAACAGAAAACAAGTATTTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCACTTTTCTAGCTGAACACAATTAAAACAGAAAACAAGTATTTGT  1095

seq1  TAATTGGGATAAATCGAATAAAAAGCTAAATATCAGGATATTTCTATGAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGGATAAATCGAATAAAAAGCTAAATATCAGGATATTTCTATGAC  1145

seq1  ACCTTCTTCAGTAGAATTC  1167
      |||||||||||||||||||
seq2  ACCTTCTTCAGTAGAATTC  1164

seq1: chr6_98274657_98275897
seq2: B6Ng01-151C15.g_67_1297

seq1  GAATTCCAAAGAGAGTCTCAGGACAGGAGCAGGAAGAGAGTTAGCCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGAGAGTCTCAGGACAGGAGCAGGAAGAGAGTTAGCCAAGG  50

seq1  GAAGAAGGATTTCGCAAATGCCAGCCCCCGGGATTACTGAGACGATTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGATTTCGCAAATGCCAGCCCCCGGGATTACTGAGACGATTAAC  100

seq1  GTAATATCAAGGAGGCACTTTAGGGACTAAGAGGATGACCTTTGACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATCAAGGAGGCACTTTAGGGACTAAGAGGATGACCTTTGACTTCA  150

seq1  TGTCCATTTTTCTCTAGGATTCCGACTGGTTTGAGAACCTATTCTCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTTTTCTCTAGGATTCCGACTGGTTTGAGAACCTATTCTCATGT  200

seq1  GCTCAGTGCTCTCTTATTTCTTAGTCTCTCTGCTCTTCAGAAATGTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGCTCTCTTATTTCTTAGTCTCTCTGCTCTTCAGAAATGTCAGT  250

seq1  TATTCCAAAATGATATCGTCCCACTATTCAAAAATCAGTTTATGAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAAAATGATATCGTCCCACTATTCAAAAATCAGTTTATGAGACTT  300

seq1  TAAAATTTCCTTGAATGAAGTTTCATTGATTTCACTAGTGCCCTTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTCCTTGAATGAAGTTTCATTGATTTCACTAGTGCCCTTTGCTT  350

seq1  CCCTCCTCTCCCTACTGTCATCTCTCCATCTGGGCTTCTTAACTGACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTCCCTACTGTCATCTCTCCATCTGGGCTTCTTAACTGACTTC  400

seq1  TATAATGAAAGGACAGGAAATCCCTGTTCACGTTCATTTAACGATAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAAAGGACAGGAAATCCCTGTTCACGTTCATTTAACGATAGTTA  450

seq1  CACGCATTCACCACTGACAAACACTGCAATAAGTGTTCTTGATGTATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCATTCACCACTGACAAACACTGCAATAAGTGTTCTTGATGTATGAA  500

seq1  AACAGATAAACTGCAGTTCCTCATGGAAGAATGAGAAAGGAGCCAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATAAACTGCAGTTCCTCATGGAAGAATGAGAAAGGAGCCAGAAAA  550

seq1  TAACTAGAAAACAGTTATAAGCAATGATAGTTACTGCTGGGAGCGGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGAAAACAGTTATAAGCAATGATAGTTACTGCTGGGAGCGGGTCA  600

seq1  TGCTCCATTCATAACTGCTGAGTCTGCCTGAGACCTGGGTCAGACAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATTCATAACTGCTGAGTCTGCCTGAGACCTGGGTCAGACAGCTT  650

seq1  TCAACTAACAGAACAACCTAATTCAGACGTGCTTAAACATAAAGTTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAACAGAACAACCTAATTCAGACGTGCTTAAACATAAAGTTACTT  700

seq1  ATCACTAATTAGTATTAAGCAGCAGAAAAGCCAAATGTCTCAACAGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAATTAGTATTAAGCAGCAGAAAAGCCAAATGTCTCAACAGTACT  750

seq1  TTTAAGAATGCCTTTTATTCTTTATCCTATGGAGTTTTTTTGTTTGTTTG  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTAAGAATGCCTTTTATTCTTTATCCTATGGAG-TTTTTTGTTTGTTTG  799

seq1  TTTGTTTTTGTTTTTTGTTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTA  850
      |||| |||||||||||||||||   |||||||||||||||||||||||||
seq2  TTTG-TTTTGTTTTTTGTTTTT--GTTTTTCGAGACAGGGTTTCTCTGTA  846

seq1  TAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAAC  896

seq1  TCAAAATCCACCTATGGAGTTTTAAGTTAGGTGAGCCACTTTGTGGCTCA  950
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TCAAAATCCACCTATGGAG-TTTAAGTTA-GTGAGCCACTTTGTGGCTCA  944

seq1  GTCCTCTCCTGATGATTAAATAAACTGCTTTTCCAGCTTCAAGAATCTTA  1000
      ||||||||||||||||  |||||||||| |||||||||||||||||||||
seq2  GTCCTCTCCTGATGAT--AATAAACTGC-TTTCCAGCTTCAAGAATCTTA  991

seq1  TGAAACCTTGACAATATT-CACAGTGAAGACTCTCAAACATTCTCTCTAA  1049
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  TGAAACCTTGACAATATTCCACAGTGAAGACTCTCAAACATTCTCTCTTA  1041

seq1  ACCACAAACATGAAAAACAAAATAAAACCAAACACCTTCCTACA-CCAGA  1098
      |||||||||||||||||||||||||||||  ||||| ||||||| |||||
seq2  ACCACAAACATGAAAAACAAAATAAAACC-GACACC-TCCTACACCCAGA  1089

seq1  AATGAAAC-TACAGTTTTTTACTAGAAATG-CACA-GTAGACAGTTATAT  1145
      |||||||| ||||| |||||||||| |||| |||| |||||||| |||||
seq2  AATGAAACATACAG-TTTTTACTAGGAATGCCACAGGTAGACAG-TATAT  1137

seq1  CACATTCTCCCAAAATATTCCCCAAAGCCA-TCATTGGCAGGTTCACTGG  1194
      ||||||||||| ||  ||||||||| |||| | ||||| ||    |||||
seq2  CACATTCTCCCGAA--ATTCCCCAAGGCCACTAATTGGGAG---TACTGG  1182

seq1  CACCATCATC-TAAC-TGCACTGATCTGAAGTCATACCATT--CCAGAGG  1240
       ||||  ||| |||| |||||||||||| || |  ||||||  | |||||
seq2  -ACCACTATCTTAACGTGCACTGATCTG-AGGCTAACCATTCACAAGAGG  1230

seq1  G  1241
      |
seq2  G  1231