BAC Information

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BAC

Clone NameB6Ng01-151F22
Chromosome6 (Build37)
Map Location 103,040,674 - 103,171,621
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn3, EG666123
Downstream geneChl1, LOC666141, LOC100043345
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151F22.bB6Ng01-151F22.g
ACCDH947203DH947204
length1,248431
definitionDH947203|Mus musculus domesticus DNA, BAC clone: B6Ng01-151F22, 5' end.DH947204|Mus musculus domesticus DNA, BAC clone: B6Ng01-151F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,170,370 - 103,171,621)(103,040,674 - 103,041,110)
sequence
gaattcacacaaatcatagacataatatattacctttacagatatatact
gtaaatggcagaatctagaaacacattcttgacttttctaaaaggtggaa
tcaaactaaatgaataacattaactatgcaagctcacataatacaagctg
aaaggaagcatgattacccccctttcttttctgggtcttgaactcaggtc
cttctacatgctaggcaagtgctctgccactgaactatatccccagccat
gaataatttgatagagaggtgaattggttaagaattcgtaatgaaagaag
tattgagctatttcccgtgtgtgtaacgcatcttcctgtcagattgtctg
ttggaaagctctgggtttggccctaaaatattattgtgagcttgaaacaa
agatcagtctccaagcatgccctcaggtggcatatggagcccaaattcca
actggaggctggtgagttttccccaaatgcaggtcacacatctactccct
gtttctggaagactgatctctacttcaccctgaggtgttcttatttctac
taccaggatgaacaactccctggaagcctatatgtgaaacatgctcctga
ccaataaactatgtcctacagtcatatgtaaacatcagccaatcagggat
aagtgtgatccctcatttgagtaggtaactaagagtaggaagttatttct
aggcaagctggctttttcattttctcagaacacatttgcattttatgtta
atgaatctaacaaactgttctggaaagtatggtttttgtcgtttttaaca
aagtataacatttgctatgaaattcttagtaagtttacactcacatttta
ctcatgctagaaataaaaattattattgtctcctcttcaaatcttcctat
gagtttcttaattgggttcatgcactgattagttgattgtttactgagtg
actatgaagtgctatatgatagcctaagtgcggggggggaaatgagaaac
aatcaaagaaacagaaaaacatgttgctcaaacacttaatgctgtataaa
tggaaaatacaaagttatttatttatataaacagatgctgaactgcataa
aggaaaactaacatgtaagaaataaatgctaggccacctttggaaagaca
catgcagatacctccctggaattcctaatggacccatatagaaatcctga
cacccatggtgtgtgccaaagcctcaagaatttcttcctatgatacca
aaagatcaaagaaagaattgtgagctgtttggaagtcttaagatcttaac
actgagaatgggatcttagtctacagtctgttccatatattattctttga
gactgagagtcattattgtggagtcgtgacacattcatacagaggcagca
tttgacagtcttatactcgacacaggtgttttgtttggttgcttttattg
tgttttttttttaaatcactcccaagaacaaaacacagaacagcatcttt
ttgttgttgttgttgctatattcagtttgggttatatattttaaaactta
caaatggtattgtctgacaacatgattatgttattttctcaatctcactg
catcttgttgtccttctgtataaattgataataataataatagtagtagt
agtagtagtagtagtagtagtagtagtagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_103170370_103171621
seq2: B6Ng01-151F22.b_45_1292 (reverse)

seq1  TGGTA-CATAGGAAGAAAATTCTTGA-GCTTGTGCACACA--ATGGGGTT  46
      ||||| ||||||||| |||||||||| ||||  |||||||  |||||  |
seq2  TGGTATCATAGGAAG-AAATTCTTGAGGCTTTGGCACACACCATGGG--T  47

seq1  GCTCAGTGATTTTTTCTATAT--GTACATTAGAAAT--CAAGAAGTAATA  92
      | |||| ||   |||||||||  || |||||| |||  || | ||  || 
seq2  G-TCAG-GA---TTTCTATATGGGTCCATTAGGAATTCCAGGGAGGTAT-  91

seq1  CTGCAT-TG-CTTTCC-AAGGTGGCCTAGCATTTATTCTGTACATGTTTA  139
      |||||| || |||||| ||||||||||||||||||||   |||||| |||
seq2  CTGCATGTGTCTTTCCAAAGGTGGCCTAGCATTTATTTCTTACATG-TTA  140

seq1  GTTTTCCTTTATTGCAGTTCAGCATTCTG-TTATATAA--TAATAACTTT  186
      ||||||||||| |||||||||||| |||| ||||||||   |||||||||
seq2  GTTTTCCTTTA-TGCAGTTCAGCA-TCTGTTTATATAAATAAATAACTTT  188

seq1  GTATTTTCCATTTATTAACAGCATTTAAGTTGTTTGAAGCAACATTGTTT  236
      |||||||||||||||  |||||| ||||| |||||| ||||||||  |||
seq2  GTATTTTCCATTTAT--ACAGCA-TTAAG-TGTTTG-AGCAACATGTTTT  233

seq1  TCTGTTTCTTTGATTGTTTCTCATTTCCCCCCCCGCACTTAGGCTATCAT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTTTGATTGTTTCTCATTTCCCCCCCCGCACTTAGGCTATCAT  283

seq1  ATAGCACTTCATAGTCACTCAGTAAACAATCAACTAAATCAGTGCATGAA  336
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAGCACTTCATAGTCACTCAGTAAACAATCAACT-AATCAGTGCATGAA  332

seq1  CCCAATTAAGAAACTCATAGGAAGATTTGAAGAGGAGACAATAATAATTT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTAAGAAACTCATAGGAAGATTTGAAGAGGAGACAATAATAATTT  382

seq1  TTATTTCTAGCATGAGTAAAATGTGAGTGTAAACTTACTAAGAATTTCAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTAGCATGAGTAAAATGTGAGTGTAAACTTACTAAGAATTTCAT  432

seq1  AGCAAATGTTATACTTTGTTAAAAACGACAAAAACCATACTTTCCAGAAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGTTATACTTTGTTAAAAACGACAAAAACCATACTTTCCAGAAC  482

seq1  AGTTTGTTAGATTCATTAACATAAAATGCAAATGTGTTCTGAGAAAATGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTAGATTCATTAACATAAAATGCAAATGTGTTCTGAGAAAATGA  532

seq1  AAAAGCCAGCTTGCCTAGAAATAACTTCCTACTCTTAGTTACCTACTCAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAGCTTGCCTAGAAATAACTTCCTACTCTTAGTTACCTACTCAA  582

seq1  ATGAGGGATCACACTTATCCCTGATTGGCTGATGTTTACATATGACTGTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGATCACACTTATCCCTGATTGGCTGATGTTTACATATGACTGTA  632

seq1  GGACATAGTTTATTGGTCAGGAGCATGTTTCACATATAGGCTTCCAGGGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAGTTTATTGGTCAGGAGCATGTTTCACATATAGGCTTCCAGGGA  682

seq1  GTTGTTCATCCTGGTAGTAGAAATAAGAACACCTCAGGGTGAAGTAGAGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCATCCTGGTAGTAGAAATAAGAACACCTCAGGGTGAAGTAGAGA  732

seq1  TCAGTCTTCCAGAAACAGGGAGTAGATGTGTGACCTGCATTTGGGGAAAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTCCAGAAACAGGGAGTAGATGTGTGACCTGCATTTGGGGAAAA  782

seq1  CTCACCAGCCTCCAGTTGGAATTTGGGCTCCATATGCCACCTGAGGGCAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGCCTCCAGTTGGAATTTGGGCTCCATATGCCACCTGAGGGCAT  832

seq1  GCTTGGAGACTGATCTTTGTTTCAAGCTCACAATAATATTTTAGGGCCAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGACTGATCTTTGTTTCAAGCTCACAATAATATTTTAGGGCCAA  882

seq1  ACCCAGAGCTTTCCAACAGACAATCTGACAGGAAGATGCGTTACACACAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGCTTTCCAACAGACAATCTGACAGGAAGATGCGTTACACACAC  932

seq1  GGGAAATAGCTCAATACTTCTTTCATTACGAATTCTTAACCAATTCACCT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATAGCTCAATACTTCTTTCATTACGAATTCTTAACCAATTCACCT  982

seq1  CTCTATCAAATTATTCATGGCTGGGGATATAGTTCAGTGGCAGAGCACTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCAAATTATTCATGGCTGGGGATATAGTTCAGTGGCAGAGCACTT  1032

seq1  GCCTAGCATGTAGAAGGACCTGAGTTCAAGACCCAGAAAAGAAAGGGGGG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCATGTAGAAGGACCTGAGTTCAAGACCCAGAAAAGAAAGGGGGG  1082

seq1  TAATCATGCTTCCTTTCAGCTTGTATTATGTGAGCTTGCATAGTTAATGT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGCTTCCTTTCAGCTTGTATTATGTGAGCTTGCATAGTTAATGT  1132

seq1  TATTCATTTAGTTTGATTCCACCTTTTAGAAAAGTCAAGAATGTGTTTCT  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTAGTTTGATTCCACCTTTTAGAAAAGTCAAGAATGTGTTTCT  1182

seq1  AGATTCTGCCATTTACAGTATATATCTGTAAAGGTAATATATTATGTCTA  1236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGCCATTTACAGTATATATCTGTAAAGGTAATATATTATGTCTA  1232

seq1  TGATTTGTGTGAATTC  1252
      ||||||||||||||||
seq2  TGATTTGTGTGAATTC  1248

seq1: chr6_103040674_103041110
seq2: B6Ng01-151F22.g_68_504

seq1  GAATTCAAAGATCAAAGAAAGAATTGTGAGCTGTTTGGAAGTCTTAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATCAAAGAAAGAATTGTGAGCTGTTTGGAAGTCTTAAGAT  50

seq1  CTTAACACTGAGAATGGGATCTTAGTCTACAGTCTGTTCCATATATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACACTGAGAATGGGATCTTAGTCTACAGTCTGTTCCATATATTATT  100

seq1  CTTTGAGACTGAGAGTCATTATTGTGGAGTCGTGACACATTCATACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGACTGAGAGTCATTATTGTGGAGTCGTGACACATTCATACAGAG  150

seq1  GCAGCATTTGACAGTCTTATACTCGACACAGGTGTTTTGTTTGGTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTTGACAGTCTTATACTCGACACAGGTGTTTTGTTTGGTTGCTT  200

seq1  TTATTGTGTTTTTTTTTTAAATCACTCCCAAGAACAAAACACAGAACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGTTTTTTTTTTAAATCACTCCCAAGAACAAAACACAGAACAGC  250

seq1  ATCTTTTTGTTGTTGTTGTTGCTATATTCAGTTTGGGTTATATATTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGTTGTTGTTGTTGCTATATTCAGTTTGGGTTATATATTTTAA  300

seq1  AACTTACAAATGGTATTGTCTGACAACATGATTATGTTATTTTCTCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACAAATGGTATTGTCTGACAACATGATTATGTTATTTTCTCAATC  350

seq1  TCACTGCATCTTGTTGTCCTTCTGTATAAATTGATAATAATAATAATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCATCTTGTTGTCCTTCTGTATAAATTGATAATAATAATAATAGT  400

seq1  AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA  437
      |||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA  437