BAC Information

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BAC

Clone NameB6Ng01-151H24
Chromosome6 (Build37)
Map Location 99,982,331 - 100,112,811
singlet/doubletdoublet
Overlap genenone
Upstream geneFoxp1, Eif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
Downstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151H24.bB6Ng01-151H24.g
ACCDH947303DH947304
length1,1171,129
definitionDH947303|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H24, 5' end.DH947304|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,111,687 - 100,112,811)(99,982,331 - 99,983,467)
sequence
gaattcagatgtcgctctccctttttacgtctccctcttcgcccatggct
ttctccctacctctaccccttcttcccatccttctaacctatccttcctc
tacttcttactgcctctgtgacccaccccaaggtcctgatggaaaacatt
caatttagggctggagtaaaggaaccttataaagcaaatagcgtgcttct
gcatgcagacgggtagaagggtttgaaggatattaagggccccttgcatt
ctggagcataggctgcagggccgccccacccccacttcagagccctactc
cccccagcccccccccctgcgcttttcttccttccctccctccctgctct
gttcccttttgacctcaacctctctcctttccatcactttctcctcagtc
cctgggaaacctgagccagaggtataggggaccaaggcaagggagggctt
tgctgtggggtagagctgggaaggtcaatctagggaaaccaggatgctag
ggaacttggggaaatagcacaggtggcttggctgctccttgcatgttcta
tgagtgagcagctgttgtgcccagaacctgctggtctggaagctcttgga
gacaggtgagcagggagttaaatgagttttctctgtagcgcagtgattct
gattcctattcattgtgaggcacctccccctcccccagcctcactgatag
cctcaggacatttttgtaaactgggggtgttcatggaggtaacctgtctt
gaagggtagctagagggttaaatgaatctccaaatgtccaagagctcaga
ttatgcctaacacagtggtggatacttgtgtgttgggctcagaggttctt
agatagtgtgcttaagcgcttgacttgtgcccaggggtttgagggcaata
gaaatgaggagaagtatgccaggcaaccaacacatagtaggagctgcata
gaaacacactccccttttcaacccttagtctgtgacttttcaagcagcta
caaccccagagaggatcactaagctgctaagggccagggccatggatagc
acagctttaatacgtctttcttcgcagggtgtaatgcaccaagaaaaagc
ttaggggggtttgggga
gaattcccttcacagacacactgagaggtgggcctcagtctactcagtga
gtccaaatcctagcaatgtcactatgaaaataaactgtgaccagtgtcct
cctagcacgcggcccagaagaaaggcatgagatgggggtaggggagatac
acgggattagaggagatacagaggtgacctttgtggccttatctcaggtg
acagaagacagctggttctatatgtgattgtacagcagaacgtgaatatc
aggagcaggggacatagggacctctgagaggctggcgtggtacagagttc
ttaatcacggtctgttttggatgctttcatgaatcagaatgacaagtgaa
cagtctggctatggaacagtcagtaaaagagtcaggagctcccaccacca
gcatcctgccatctaacaggttcatgactcacaacaaaatgcagaggctc
tcggcatctagctcattcacgctgtgaaaaaagaggacatgcacacagct
catccctcttgcgctgtgattctggcctggagtcagccagtttccagaaa
tggcagcgaaccgtgatgcatgctgggcagactccttctggaccagtcat
gtcgccctgccagatctcccggtcgacccctgcagggaccaggggctcag
ctccagcatgaagtagacagaagaagcatgcctccgtgtacccgtgggga
tctaatgaaaacagccatatgctgcagaagctgctgcacaaattccagca
cagcagaaaaagtcccatgccagccttggcatgccacatttccgcgagga
agatgggtgaccctctccacccaaataagaaggaatatccaaagcatgaa
ggggccgtgtacattttagaacttgccccttgccctccagaccgtaagtc
cagagttagagagtacggagaagggctgaagttctctgtatcacaagcac
ataagagcccgtgcatcgccgactctactgaccttcagctcagcagagat
gacaggcacagctccttacagcagacaagtcttctcttggtctgtgttct
ctcctatatcactctctgaatacccaaccctcctttctgaatctcacagg
actctttgatgacatgatccttcggattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_100111687_100112811
seq2: B6Ng01-151H24.b_45_1161 (reverse)

seq1  TCCCCAAACCCACCATAGCCATCTCTTGGTGCATTACAGCCATGCCGAGA  50
      ||||||||||| ||  |||  | ||||||||||||||| || |||  |||
seq2  TCCCCAAACCCCCCTAAGCTTTTTCTTGGTGCATTACA-CCCTGCGAAGA  49

seq1  AAGACGTAACTGAATGCTGTCGCTATACATGGCCCTGGCCCTTTAAGCAA  100
      ||||||||  | || ||||| ||||| ||||||||||||||||  ||| |
seq2  AAGACGTA--TTAAAGCTGT-GCTATCCATGGCCCTGGCCCTT--AGC-A  93

seq1  GCTCGATGATCATCTCTGGGGCTTGTGGCTGCTTTGAAAAGTCACCAGAC  150
      |||   ||||| ||||||||| |||| ||||| ||||||||||| |||||
seq2  GCTTAGTGATCCTCTCTGGGG-TTGTAGCTGC-TTGAAAAGTCA-CAGAC  140

seq1  TAAGGGTGTGAAAAGGGGAGTGCTGTTTCTCTGCAGCTCCTACTATGTGT  200
      ||||||| |||||||||||||| ||||||| |||||||||||||||||||
seq2  TAAGGGT-TGAAAAGGGGAGTG-TGTTTCTATGCAGCTCCTACTATGTGT  188

seq1  TGGTTGCCTGGCATACTTCTCCTCATTTCTATTG-CCTCAAACCCCTGGG  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGTTGCCTGGCATACTTCTCCTCATTTCTATTGCCCTCAAACCCCTGGG  238

seq1  CACAAGGTCAAGCGCTTAAGCACACTATCTAAG-ACCTCTGAGCCCAACA  298
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACAA-GTCAAGCGCTTAAGCACACTATCTAAGAACCTCTGAGCCCAACA  287

seq1  CAC-AGTATCCACCACTGTGTTAGGCATAATCTGAGCTCTT-GACATTTG  346
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACAAGTATCCACCACTGTGTTAGGCATAATCTGAGCTCTTGGACATTTG  337

seq1  GAGATTCATTTAACCCTCTAGCTACCCTTCAAGACAGGTTACCTCCATGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCATTTAACCCTCTAGCTACCCTTCAAGACAGGTTACCTCCATGA  387

seq1  ACA-CCCCAGTTTACAAAAATGTCCTGAGGCTATCAGTGAGGCTGGGGGA  445
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCAGTTTACAAAAATGTCCTGAGGCTATCAGTGAGGCTGGGGGA  437

seq1  GGGGGAGGTGCCTCACAATGAATAGGAATCAGAATCACTGCGCTACAGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGTGCCTCACAATGAATAGGAATCAGAATCACTGCGCTACAGAG  487

seq1  AAAACTCATTTAACTCCCTGCTCACCTGTCTCCAAGAGCTTCCAGACCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCATTTAACTCCCTGCTCACCTGTCTCCAAGAGCTTCCAGACCAG  537

seq1  CAGGTTCTGGGCACAACAGCTGCTCACTCATAGAACATGCAAGGAGCAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTGGGCACAACAGCTGCTCACTCATAGAACATGCAAGGAGCAGC  587

seq1  CAAGCCACCTGTGCTATTTCCCCAAGTTCCCTAGCATCCTGGTTTCCCTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACCTGTGCTATTTCCCCAAGTTCCCTAGCATCCTGGTTTCCCTA  637

seq1  GATTGACCTTCCCAGCTCTACCCCACAGCAAAGCCCTCCCTTGCCTTGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACCTTCCCAGCTCTACCCCACAGCAAAGCCCTCCCTTGCCTTGGT  687

seq1  CCCCTATACCTCTGGCTCAGGTTTCCCAGGGACTGAGGAGAAAGTGATGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATACCTCTGGCTCAGGTTTCCCAGGGACTGAGGAGAAAGTGATGG  737

seq1  AAAGGAGAGAGGTTGAGGTCAAAAGGGAACAGAGCAGGGAGGGAGGGAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAGAGGTTGAGGTCAAAAGGGAACAGAGCAGGGAGGGAGGGAAG  787

seq1  GAAGAAAAGCGCAGGGGGGGGGGCTGGGGGGAGTAGGGCTCTGAAGTGGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGCGCAGGGGGGGGGGCTGGGGGGAGTAGGGCTCTGAAGTGGG  837

seq1  GGTGGGGCGGCCCTGCAGCCTATGCTCCAGAATGCAAGGGGCCCTTAATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCGGCCCTGCAGCCTATGCTCCAGAATGCAAGGGGCCCTTAATA  887

seq1  TCCTTCAAACCCTTCTACCCGTCTGCATGCAGAAGCACGCTATTTGCTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAACCCTTCTACCCGTCTGCATGCAGAAGCACGCTATTTGCTTT  937

seq1  ATAAGGTTCCTTTACTCCAGCCCTAAATTGAATGTTTTCCATCAGGACCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTTCCTTTACTCCAGCCCTAAATTGAATGTTTTCCATCAGGACCT  987

seq1  TGGGGTGGGTCACAGAGGCAGTAAGAAGTAGAGGAAGGATAGGTTAGAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGGTCACAGAGGCAGTAAGAAGTAGAGGAAGGATAGGTTAGAAG  1037

seq1  GATGGGAAGAAGGGGTAGAGGTAGGGAGAAAGCCATGGGCGAAGAGGGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAGAAGGGGTAGAGGTAGGGAGAAAGCCATGGGCGAAGAGGGAG  1087

seq1  ACGTAAAAAGGGAGAGCGACATCTGAATTC  1125
      ||||||||||||||||||||||||||||||
seq2  ACGTAAAAAGGGAGAGCGACATCTGAATTC  1117

seq1: chr6_99982331_99983467
seq2: B6Ng01-151H24.g_68_1196

seq1  GAATTCCCTTCACAGACACACTGAGAGGTGGGCCTCAGTCTACTCAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCACAGACACACTGAGAGGTGGGCCTCAGTCTACTCAGTGA  50

seq1  GTCCAAATCCTAGCAATGTCACTATGAAAATAAACTGTGACCAGTGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAATCCTAGCAATGTCACTATGAAAATAAACTGTGACCAGTGTCCT  100

seq1  CCTAGCACGCGGCCCAGAAGAAAGGCATGAGATGGGGGTAGGGGAGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACGCGGCCCAGAAGAAAGGCATGAGATGGGGGTAGGGGAGATAC  150

seq1  ACGGGATTAGAGGAGATACAGAGGTGACCTTTGTGGCCTTATCTCAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGATTAGAGGAGATACAGAGGTGACCTTTGTGGCCTTATCTCAGGTG  200

seq1  ACAGAAGACAGCTGGTTCTATATGTGATTGTACAGCAGAACGTGAATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGACAGCTGGTTCTATATGTGATTGTACAGCAGAACGTGAATATC  250

seq1  AGGAGCAGGGGACATAGGGACCTCTGAGAGGCTGGCGTGGTACAGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGGGGACATAGGGACCTCTGAGAGGCTGGCGTGGTACAGAGTTC  300

seq1  TTAATCACGGTCTGTTTTGGATGCTTTCATGAATCAGAATGACAAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCACGGTCTGTTTTGGATGCTTTCATGAATCAGAATGACAAGTGAA  350

seq1  CAGTCTGGCTATGGAACAGTCAGTAAAAGAGTCAGGAGCTCCCACCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGGCTATGGAACAGTCAGTAAAAGAGTCAGGAGCTCCCACCACCA  400

seq1  GCATCCTGCCATCTAACAGGTTCATGACTCACAACAAAATGCAGAGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGCCATCTAACAGGTTCATGACTCACAACAAAATGCAGAGGCTC  450

seq1  TCGGCATCTAGCTCATTCACGCTGTGAAAAAAGAGGACATGCACACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCATCTAGCTCATTCACGCTGTGAAAAAAGAGGACATGCACACAGCT  500

seq1  CATCCCTCTTGCGCTGTGATTCTGGCCTGGAGTCAGCCAGTTTCCAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCTTGCGCTGTGATTCTGGCCTGGAGTCAGCCAGTTTCCAGAAA  550

seq1  TGGCAGCGAACCGTGATGCATGCTGGGCAGACTCCTTCTGGACCAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCGAACCGTGATGCATGCTGGGCAGACTCCTTCTGGACCAGTCAT  600

seq1  GTCGCCCTGCCAGATCTCCCGGTCGACCCCTGCAGGGACCAGGGGCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCCTGCCAGATCTCCCGGTCGACCCCTGCAGGGACCAGGGGCTCAG  650

seq1  CTCCAGCATGAAGTAGACAGAAGAAGCATGCCTCCGTGTACCCGTGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCATGAAGTAGACAGAAGAAGCATGCCTCCGTGTACCCGTGGGGA  700

seq1  TCTAATGAAAACAGCCATATGCTGCAGAAGCTGCTGCACAAATTCCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAAAACAGCCATATGCTGCAGAAGCTGCTGCACAAATTCCAGCA  750

seq1  CAGCAGAAAAAGTCCCATGCCAGCCTTGGCATGCCACATTTCCGCGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAAAAAGTCCCATGCCAGCCTTGGCATGCCACATTTCCGCGAGGA  800

seq1  AGATGGGTGACCCTCTCCACCCAAATAAGAAGGAATATCCAAAGCATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTGACCCTCTCCACCCAAATAAGAAGGAATATCCAAAGCATGAA  850

seq1  GGGGCCGTGTACATTTTAGAACTTGCCCCTTGCCCTCCAGACCGTAAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCGTGTACATTTTAGAACTTGCCCCTTGCCCTCCAGACCGTAAGTC  900

seq1  CAGAGTTAGAGAAGTACGGAGAAGGGCTGAAGTTCTCTGTATTCACAAAG  950
      ||||||||||| ||||||||||||||||||||||||||||| |||| |||
seq2  CAGAGTTAGAG-AGTACGGAGAAGGGCTGAAGTTCTCTGTA-TCAC-AAG  947

seq1  CACATAAGAAGCCCGTGCATCGCCGACTCTACTGACCTCCAGCTCAAGCA  1000
      |||||||| ||||||||||||||||||||||||||||| |||||| ||||
seq2  CACATAAG-AGCCCGTGCATCGCCGACTCTACTGACCTTCAGCTC-AGCA  995

seq1  GAGATGACAAGGCACAGCCCCTTACAGCAGACAAGTC-TCTC-TGGTCTG  1048
      |||||||| ||||||||| |||||||||||||||||| |||| |||||||
seq2  GAGATGAC-AGGCACAGCTCCTTACAGCAGACAAGTCTTCTCTTGGTCTG  1044

seq1  TGTTCTCTTCCTTATATCCACTCCTCTG-ATACCCAA-CCTCCTTTCTGA  1096
      ||||||||  | ||||| |||| ||||| |||||||| ||||||||||||
seq2  TGTTCTCT--CCTATAT-CACT-CTCTGAATACCCAACCCTCCTTTCTGA  1090

seq1  ATCTCACAGGACTCTTTGATGACATAGAACCTTCGGGATTC  1137
      ||||||||||||||||||||||||| || ||||| ||||||
seq2  ATCTCACAGGACTCTTTGATGACAT-GATCCTTC-GGATTC  1129