BAC Information

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BAC

Clone NameB6Ng01-152F23
Chromosome6 (Build37)3 (Build37)
Map Location 67,611,014 - 67,611,089122,742,650 - 122,743,635
singlet/doubletsingletsinglet
Overlap geneIgk
Upstream geneV1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006
Downstream geneIgkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152F23.bB6Ng01-152F23.g
ACCDH947963DH947964
length270991
definitionDH947963|Mus musculus domesticus DNA, BAC clone: B6Ng01-152F23, 5' end.DH947964|Mus musculus domesticus DNA, BAC clone: B6Ng01-152F23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,611,014 - 67,611,089)(122,742,650 - 122,743,635)
sequence
ctgatctctccatacttttaacatcgaaggggtgttgtattttgtcaaat
gctttttcttttcttttcttttctttttttaaaaaatagttttagagctt
tattgcagaaaggcagagagaaagagagaaggtagaaagagggagagagg
gggaagggagagagagaaggagggctagagaggagagtaagaaaggcaaa
tgcttaaacgcaaatgctttttctgcttctaaggagatgatcttgtgatt
tttttcattgagtttgttta
gaattcatgagcctatatcctgaatctcctgagtgctgagattctaggta
tgtgtcatgatatctgactacctgaatgaatttttatttaattagatcaa
ttgagatctgtatgtaagagaagtgattttttttttgcataggtgagaaa
actatatttttcagtgttttgaatctgtgcagaatatggccttgctagaa
ctgtgggagaaattttgacaaagctgtgtaagtgttgggactaagcaaga
aaggagaaaggacttataggtttgttttggcaacttgtttttattattat
tattattattattattattattattattattattattattattcctgcct
acaaaactgtatttctaacttcttagccagccattggattctgcttacac
ctccttctgttcctggcttatctgaggcttcgatgcaaacatttaaggag
acgtattttaaaacaaaacagaacaaaatccttgcaaaggaagcgggtgt
gtgcgctcccttagcaggctgtttcgactggatgagtgtcgttggtagag
gcggtgtgttcacaacactgtggtacccaggccagaggaagaaggagaag
gcgaaaaacaaagctttcttgctttcctgtgtttatgctctgcgttttaa
taactggtattttgcacagctgagggaaaggaaagcatactgagagcaag
gtatcactgagagccccaggagccggcaaaccagaaaaacacgaagagga
aaacagttgcacaggttacaacccaaaagcatcccatccaagacaaaccc
agtcctgtggatttccagagggaaaccgctaaggaacacgttgctgtact
tactttgagcattttcaatcctgtttctttatttaaagagatgcttcaga
acagatgaaagaaatagagatcttctcttgatactgtaaaagggcaaagc
cttttggatcagaccaaattattttttttttttttatgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67611014_67611089
seq2: B6Ng01-152F23.b_79_319 (reverse)

seq1  TAAACAAACTCAAAGACAAAATCCACTAGATCATCTCCTTAGATGCAGAG  50
      ||||||||||||| || ||||  ||| |||||||||||||||| ||||| 
seq2  TAAACAAACTCAATGAAAAAAATCACAAGATCATCTCCTTAGAAGCAGAA  50

seq1  AAAGCATTTGACAAAATCCAACACCC------------------------  76
      ||||||||||     |  ||    ||                        
seq2  AAAGCATTTGCGTTTAAGCATTTGCCTTTCTTACTCTCCTCTCTAGCCCT  100

seq1  --------------------------------------------------  76
                                                        
seq2  CCTTCTCTCTCTCCCTTCCCCCTCTCTCCCTCTTTCTACCTTCTCTCTTT  150

seq1  --------------------------------------------------  76
                                                        
seq2  CTCTCTGCCTTTCTGCAATAAAGCTCTAAAACTATTTTTTAAAAAAAGAA  200

seq1  -----------------------------------------  76
                                               
seq2  AAGAAAAGAAAAGAAAAAGCATTTGACAAAATACAACACCC  241

seq1: chr3_122742650_122743635
seq2: B6Ng01-152F23.g_67_1057 (reverse)

seq1  AAACATTAAAAAAAAAAAATTAGTTTGGTCTGATCC-AAAGGCTTTGCCC  49
      |||||| |||||||||||| || ||||||||||||| |||||||||||||
seq2  AAACATAAAAAAAAAAAAAATAATTTGGTCTGATCCAAAAGGCTTTGCCC  50

seq1  TTTTACAGTATCATGGAGAGATCTCTATTTCTTTCATCTGTTCTG-AGCA  98
      ||||||||||||| |   ||||||||||||||||||||||||||| ||||
seq2  TTTTACAGTATCAAGAGAAGATCTCTATTTCTTTCATCTGTTCTGAAGCA  100

seq1  TCTCTATAAATAAAGAAACAGGATTGAAAATGCTCAAAGTAAGTACAGCA  148
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAAATAAAGAAACAGGATTGAAAATGCTCAAAGTAAGTACAGCA  150

seq1  ACGTGTTCCTTAGCGGTTT-CCTCTGGAAATCC-CAGGACTGGGTTTGTC  196
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  ACGTGTTCCTTAGCGGTTTCCCTCTGGAAATCCACAGGACTGGGTTTGTC  200

seq1  TTGGATGGGATGCTTTTGGGTTGTAACCTGTGCAACTGTTTTCCTCTTCG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGGGATGCTTTTGGGTTGTAACCTGTGCAACTGTTTTCCTCTTCG  250

seq1  TGTTTTTCTGGTTTGCCGGCTCCTGGGGCTCTCAGTGATACCTTGCTCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTGGTTTGCCGGCTCCTGGGGCTCTCAGTGATACCTTGCTCTC  300

seq1  AGTATGCTTTCCTTTCCTTCAGCTGTGC-AAATACCAGTTATTAAAACGC  345
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  AGTATGCTTTCCTTTCCCTCAGCTGTGCAAAATACCAGTTATTAAAACGC  350

seq1  AGAGCATAAACACAGGAAAGCAAGAAAGCTTTGTTTTTCGCCTTCTCCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAAACACAGGAAAGCAAGAAAGCTTTGTTTTTCGCCTTCTCCTT  400

seq1  CTTCCTCTGGCCTGGGTACCACAGTGTTGTGAACACACCGCCTCTACCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGGCCTGGGTACCACAGTGTTGTGAACACACCGCCTCTACCAA  450

seq1  CGACACTCATCCAGTCGAAACAGCCTGCTAAGGGAGCGCACACACCCGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACTCATCCAGTCGAAACAGCCTGCTAAGGGAGCGCACACACCCGCT  500

seq1  TCCTTTGCAAGGATTTTGTTCTGTTTTGTTTTAAAATACGTCTCCTTAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCAAGGATTTTGTTCTGTTTTGTTTTAAAATACGTCTCCTTAAA  550

seq1  TGTTTGCATCGAAGCCTCAGATAAGCCAGGAACAGAAGGAGGTGTAAGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCATCGAAGCCTCAGATAAGCCAGGAACAGAAGGAGGTGTAAGCA  600

seq1  GAATCCAATGGCTGGCTAAGAAGTTAGAAATACAGTTTTGTAGGCAGGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAATGGCTGGCTAAGAAGTTAGAAATACAGTTTTGTAGGCAGGAA  650

seq1  TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA  700

seq1  AAAACAAGTTGCCAAAACAAACCTATAAGTCCTTTCTCCTTTCTTGCTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTTGCCAAAACAAACCTATAAGTCCTTTCTCCTTTCTTGCTTA  750

seq1  GTCCCAACACTTACACAGCTTTGTCAAAATTTCTCCCACAGTTCTAGCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAACACTTACACAGCTTTGTCAAAATTTCTCCCACAGTTCTAGCAA  800

seq1  GGCCATATTCTGCACAGATTCAAAACACTGAAAAATATAGTTTTCTCACC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATATTCTGCACAGATTCAAAACACTGAAAAATATAGTTTTCTCACC  850

seq1  TATGCAAAAAAAAAATCACTTCTCTTACATACAGATCTCAATTGATCTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAAAAAAAATCACTTCTCTTACATACAGATCTCAATTGATCTAA  900

seq1  TTAAATAAAAATTCATTCAGGTAGTCAGATATCATGACACATACCTAGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAAATTCATTCAGGTAGTCAGATATCATGACACATACCTAGAA  950

seq1  TCTCAGCACTCAGGAGATTCAGGATATAGGCTCATGAATTC  986
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCACTCAGGAGATTCAGGATATAGGCTCATGAATTC  991