BAC Information

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BAC

Clone NameB6Ng01-152L04
Chromosome6 (Build37)
Map Location 109,505,947 - 109,507,212
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110, LOC100043720
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152L04.bB6Ng01-152L04.g
ACCDH948210DH948211
length1,2511,139
definitionDH948210|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L04, 5' end.DH948211|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactatgagtatttttaatgccaagcactttctacctcacttaac
ccttctaatgatgtaaggtagatatgtctgttatgcttcatttttctgat
cagaatgcaaagctttttcaaaagccatatgtcctaaaatccagaacagg
cattttaggtacagaaagtctctttaaggtaactcttattatatgactac
tatatatctatcctttaatattatcctccattgatttctacctctgccat
tcattttctcttccaggtcccctataaatgaaccagagctgccacagggc
aacctattggccacagcagaggagatacaggttaatttaccagtgttgac
ttgggaaaggtctgaaatttccacctatgcttctaaaatactaagacgtg
ttcccaatctgattttctgcgttgtgtgtgatgggattagacatgtaatg
cttagcctaataaatgactcctgtttgcaatcaatttgttctctcacttt
gttcataatgccctcataccaatctgaaagtcaaatccagaattattact
cctgcttggaccatctctccctctagtgtcatttttctctacggtggtga
ttctctgcttctgggccatgaacctttggggggtttgcctatcagatatc
ctggatatcagatatttacattataattcataatagtagcaaaatttcag
ttatgaaataacaacagaaataattttatggttgggggccaccacaatat
aaggagctacataaaagaaccacagcattaaggaaattaagaactactac
tctagaggaagatctaccttgagaaatctcatgaagaggtgtcatttgac
taacaggttgctcatgaaaatagtgcaaaatatttacattcaattcctta
ttacacaaatatttctttcttaaatgactttctagttccaacgacaatag
ttaaatgtgctaagacctaggaagcacttctctagcacaaacaggtgggt
caagagaagagccaaatatttacaacaaaatagcagcctttacttctgat
aaatatttttcagatcaacaatgcatggcactatacttgaagcagcttct
tcaagccaacaatgtatctttcctaattttgtactttggtctactaaggc
ttggaccctcaccgagaccaatgttattgaagggatgtaccagattgaaa
tggattcagactaattggattccggctatatgaccttaaatctctgacag
a
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatattggatattagtccc
ctatctggtttaggatagatactttcccaatatgttggtggcctttttgt
cttattgatggtgtcttttgccctacagaagctttgcaactttatgaggt
cccatttgtctattctcgatcttacagcacaagctattgctgttctgttc
aggaatttttcccctgtgcccatatcttcaaggcttttccccactttctc
ctctataagtttcactgtctttggttttatgtggagttccttgatccact
tagatttgaccttagaacaaggagataggaatggatcagtttgcattctt
ctacttgttgtgccagcaccattttttgaaaatgctgtcttttttccact
ggatggtttttagctcccttgtcaaatattaagtgaccataggtgtgtgg
gttcatttctgggtcttcaattctattccattggtctatttgtctgtcag
tataccagtaccatgcagtttttatcacaattgctctgtagtacagcttt
aggtcaggcatggtgattccaccagaggttcttttattcttgagaaaatt
ttttgctaccctaggtttttttgttattccaggtgaatttgcagattgcc
ctttttaattggttgaagaattgagttggaattttgatggaaattgcatt
gaatctgtagattgcttttggcaagatactcattttactatattgatact
gccaatccatgagcgtgggagatctttccatcttctgaggatctcctttt
attttctttctcagagacttggagttcttttcatacagatctgtcacttc
cttagaatcacggccagggtattttattatatttgtgactattggagaag
ggtgttgtttccctaattccttcctcagcctggtttatcctttgagagag
gaaaggtcattgacctgttttgagtaattttataccagctacttcatgga
gctgtttatcaggtcctggggggaatttaggtccttaataataccttaat
acatcttcaaaaaggaatatttgtactctcctttccaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109505947_109507212
seq2: B6Ng01-152L04.b_44_1294 (reverse)

seq1  TCTGTCAGAGATTTTAGTTACATAT-GCCTGAATCACAAATTTTATGTTC  49
      |||||||||||||| || | ||||| ||| ||||| ||| |  | ||   
seq2  TCTGTCAGAGATTTAAGGT-CATATAGCCGGAATC-CAATTAGTCTG---  45

seq1  TTTATATCTTATTTCAATCTTGGGTTACATACCTTCATATTACATTGGTC  99
           |||  ||||||||||   | ||||| |||||| || |||||||||
seq2  ----AATC-CATTTCAATCT---GGTACATCCCTTCA-ATAACATTGGTC  86

seq1  TGGTAGATGTTCAAAGCCTTAGTAGGACCAAAGTACAAAATTAGGAAAGA  149
      | |  || | || ||||||||||| |||||||||||||||||||||||||
seq2  TCGGTGAGGGTCCAAGCCTTAGTA-GACCAAAGTACAAAATTAGGAAAGA  135

seq1  TACATTGGTTGCTTG-AGAAGCTGCTTCAAGTATTAGTGCCATGCATTGT  198
      ||||||| | ||||| ||||||||||||||||| ||||||||||||||||
seq2  TACATTGTTGGCTTGAAGAAGCTGCTTCAAGTA-TAGTGCCATGCATTGT  184

seq1  TGATCTGAAAATATTTTATCAG-AGTAAAGGCTGCTATTTTGTTGTATAT  247
      |||||||||||   |||||||| |||||||||||||||||||||||| ||
seq2  TGATCTGAAAAATATTTATCAGAAGTAAAGGCTGCTATTTTGTTGTAAAT  234

seq1  ATTTGGCCTCTTCTCTTGACCCACTGTTTTGTGCTAGAGAAGTTGCTTCC  297
      |||||| |||||||||||||||||   ||||||||||||||| |||||||
seq2  ATTTGG-CTCTTCTCTTGACCCACCTGTTTGTGCTAGAGAAG-TGCTTCC  282

seq1  TAGGTCTTAGCACATTTAACTATTGTCGTTGGAACTAGAAAGTCATTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTAGCACATTTAACTATTGTCGTTGGAACTAGAAAGTCATTTAA  332

seq1  GAAAGAAATATTTGTGTAATAAGGAATTGAATGTGAATATTTTGCACTAT  397
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAAGAAATATTTGTGTAATAAGGAATTGAATGTAAATATTTTGCACTAT  382

seq1  TTTCATGAGCAACCTGTTAGTCAAATGACACCTCTTCATGAGATTTCTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAGCAACCTGTTAGTCAAATGACACCTCTTCATGAGATTTCTCA  432

seq1  AGGTAGATCTTCCTCTAGAGTAGTAGTTCTTAATTTCCTTAATGCTGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATCTTCCTCTAGAGTAGTAGTTCTTAATTTCCTTAATGCTGTGG  482

seq1  TTCTTTTATGTAGCTCCTTATATTGTGGTGGCCCCCAACCATAAAATTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATGTAGCTCCTTATATTGTGGTGGCCCCCAACCATAAAATTAT  532

seq1  TTCTGTTGTTATTTCATAACTGAAATTTTGCTACTATTATGAATTATAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGTTATTTCATAACTGAAATTTTGCTACTATTATGAATTATAAT  582

seq1  GTAAATATCTGATATCCAGGATATCTGATAGGCAAACCCCCCAAAGGTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATCTGATATCCAGGATATCTGATAGGCAAACCCCCCAAAGGTTC  632

seq1  ATGGCCCAGAAGCAGAGAATCACCACCGTAGAGAAAAATGACACTAGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCAGAAGCAGAGAATCACCACCGTAGAGAAAAATGACACTAGAGG  682

seq1  GAGAGATGGTCCAAGCAGGAGTAATAATTCTGGATTTGACTTTCAGATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGTCCAAGCAGGAGTAATAATTCTGGATTTGACTTTCAGATTG  732

seq1  GTATGAGGGCATTATGAACAAAGTGAGAGAACAAATTGATTGCAAACAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGGGCATTATGAACAAAGTGAGAGAACAAATTGATTGCAAACAGG  782

seq1  AGTCATTTATTAGGCTAAGCATTACATGTCTAATCCCATCACACACAACG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTATTAGGCTAAGCATTACATGTCTAATCCCATCACACACAACG  832

seq1  CAGAAAATCAGATTGGGAACACGTCTTAGTATTTTAGAAGCATAGGTGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCAGATTGGGAACACGTCTTAGTATTTTAGAAGCATAGGTGGA  882

seq1  AATTTCAGACCTTTCCCAAGTCAACACTGGTAAATTAACCTGTATCTCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGACCTTTCCCAAGTCAACACTGGTAAATTAACCTGTATCTCCT  932

seq1  CTGCTGTGGCCAATAGGTTGCCCTGTGGCAGCTCTGGTTCATTTATAGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGGCCAATAGGTTGCCCTGTGGCAGCTCTGGTTCATTTATAGGG  982

seq1  GACCTGGAAGAGAAAATGAATGGCAGAGGTAGAAATCAATGGAGGATAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGAAGAGAAAATGAATGGCAGAGGTAGAAATCAATGGAGGATAAT  1032

seq1  ATTAAAGGATAGATATATAGTAGTCATATAATAAGAGTTACCTTAAAGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGATAGATATATAGTAGTCATATAATAAGAGTTACCTTAAAGAG  1082

seq1  ACTTTCTGTACCTAAAATGCCTGTTCTGGATTTTAGGACATATGGCTTTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGTACCTAAAATGCCTGTTCTGGATTTTAGGACATATGGCTTTT  1132

seq1  GAAAAAGCTTTGCATTCTGATCAGAAAAATGAAGCATAACAGACATATCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCTTTGCATTCTGATCAGAAAAATGAAGCATAACAGACATATCT  1182

seq1  ACCTTACATCATTAGAAGGGTTAAGTGAGGTAGAAAGTGCTTGGCATTAA  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACATCATTAGAAGGGTTAAGTGAGGTAGAAAGTGCTTGGCATTAA  1232

seq1  AAATACTCATAGTGAATTC  1266
      |||||||||||||||||||
seq2  AAATACTCATAGTGAATTC  1251