BAC Information

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BAC

Clone NameB6Ng01-152N05
Chromosome8 (Build37)6 (Build37)
Map Location 51,884,148 - 51,884,4688,599,055 - 8,600,081
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039919, EG667495, LOC100039954, LOC100039966
Downstream geneLOC667517
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152N05.bB6Ng01-152N05.g
ACCDH948303DH948304
length8781,020
definitionDH948303|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N05, 5' end.DH948304|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,884,148 - 51,884,468)(8,599,055 - 8,600,081)
sequence
gaattctatgaagcctttgatttcttatttcttccctgaaaaagtaatca
ctgagctgaaagtagttcagtttccatgagtatgtggggtttgttgtttt
tcttgttatagagccttagtccatagtgatctgatagaatgcatgggatt
atttccatcttcttgtatctgttgaggcttgttttatgtctgattatatg
gtcagttttggagaagtttccatgatgggctgagaaggtatattcttatt
tgggggtgaaatgttctgtagatatctgttaaatccatttggttcataac
ttctgttagtttaactgtgtctctgtttagtttctgtttctaggatctgt
ccattggtgagtgtgggatgttgaagtctcccactattattgtatgaggt
tcaatatgtgttttgaactttagtaaagtttcttttatgaatgtggatgc
ccttgtatttggagtatagatgttcaggattgagactttctcttggcgga
tttttccttttatttttccttttccttctttttatgaagtgccccttccc
ttctcacttgataacttttggttgaaagcctattttattggatattagaa
tggctactcgagcttatttcttggggccattttgcttggaaaactttgtc
cagccttttactctgaggtaatgtctgtctttatctctgaggtgtgtttc
ttttatgcagcaaagtgctgaatcctgtataagtatccagtctgttagcc
gtgtctttttattggagaattgggtccattgatgttgagagatactaaag
acagatgattggtagttcctgttattttttgttgctggaaatgggattat
gtgtgtataattctcttcttttgggttt
gaattctgactggcaggggcccgagtgggcatgggggtggcataaggatc
tgtatgtgctctctggaaaaaaaacaaaacaaaacaaaagaatgatctaa
gaatgtgagacccaagtaggcacacacaaaaacacctgattgctaaaacc
ctactccaatctctcttgatataaaccatgaatcttggggctagaacaga
tctttaagaatctataggaacaatctcatacagagcattctactacatga
ttaagaacattcgttttattatttacttggtctctttaagcaaagtttca
tgtggtctgagctggctcaaacttgttgtgctggctctaatcctctaccc
cccaaggtgggattacaggtgtttgctgacacacttcagtgttactgttg
ggctggggaggggacggatgactcagtggtagagctctggtttaacatgt
gtaaagaaaagggtgtcatttcatagggtaacccaggtcaccagtatatc
ccagcacactgaaggaagagtttacatgagcagataaggaatttaatact
tggtcactgtatgtcctgaggcaaagcaaacagatctctcatttgactct
aagggtgactgcaggtgaccattaaatgactcaggagaaactaggtgcca
tatgatagcacatgattgctttgggctaaaggttctctcctagagctctg
ctggctgctggctgaaccgacatcagtacacttggccacaacatagaaag
gcgagcagtagcagaagaagacaaacatgcttgtgaaatatggataataa
atagttttgttttgcttcttaattagccagatcttgtggtttttcataaa
gttttgttgataagatgtaggttaaatttaactataaaaatttcactttg
tttttaccacattttttgtctgtgtatgctattttggcaggggttggggg
tgtcagcttgagagcaaatgattgatatatgtttaattagtgattgaagg
ctgcatggcacaggtggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_51884148_51884468
seq2: B6Ng01-152N05.b_598_922 (reverse)

seq1  AAACCCAAAAGAAGAGAATCATGCACATGTAGT---ATCACCACCAACAA  47
      ||||||||||||||||||| || ||||  || |   ||  ||| ||||||
seq2  AAACCCAAAAGAAGAGAATTATACACACATAATCCCATTTCCAGCAACAA  50

seq1  CAAAATAATAAGAACTAACAATCACTGGTCATTCATATCTCTTAATATCA  97
       ||||||| | |||||| ||||||   ||| ||  ||||||| || ||||
seq2  -AAAATAACAGGAACTACCAATCATCTGTCTTTAGTATCTCTCAACATCA  99

seq1  ATGGACTCAATTCACCAATAAAATAACACAGCCTAAAAAATGGGATATGT  147
      |||||| |||||| |||||||||  |||| | |||| | |  |||||  |
seq2  ATGGACCCAATTCTCCAATAAAAAGACAC-GGCTAACAGACTGGATACTT  148

seq1  AAACAGGATCCATCATTCTGATGTATACAAGAAACGCACTGCAGAAACAA  197
      | ||||||| || || | || || ||| ||||||| |||  |||| | ||
seq2  ATACAGGATTCAGCACTTTGCTGCATAAAAGAAACACACCTCAGAGATAA  198

seq1  AGATAGACACTGCCTCAGAGAAAAAGGCAGG--AGGTTTTTTCAAG-TAA  244
      ||| ||||| | |||||||| ||||||| ||  |   |||| ||||  ||
seq2  AGACAGACATTACCTCAGAGTAAAAGGCTGGACAAAGTTTTCCAAGCAAA  248

seq1  ATTATCCCAGGCAACAAGCTAGAATAGCCGTTCTTATATCTAATGAAATA  294
      ||   |||| | || ||||| || ||||| |||| ||||| ||| |||||
seq2  ATGGCCCCAAGAAATAAGCTCGAGTAGCCATTCTAATATCCAATAAAATA  298

seq1  GAATTTCAACCAAAAGTAATCAAGTGA  321
      |  |||||||||||||| |||||||||
seq2  GGCTTTCAACCAAAAGTTATCAAGTGA  325

seq1: chr6_8599055_8600081
seq2: B6Ng01-152N05.g_70_1089

seq1  GAATTCTGACTGGCAGGGGCCCGAGTGGGCATGGGGGTGGCATAAGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACTGGCAGGGGCCCGAGTGGGCATGGGGGTGGCATAAGGATC  50

seq1  TGTATGTGCTCTCTGGAAAAAAAACAAAACAAAACAAAAGAATGATCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGCTCTCTGGAAAAAAAACAAAACAAAACAAAAGAATGATCTAA  100

seq1  GAATGTGAGACCCAAGTAGGCACACACAAAAACACCTGATTGCTAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAGACCCAAGTAGGCACACACAAAAACACCTGATTGCTAAAACC  150

seq1  CTACTCCAATCTCTCTTGATATAAACCATGAATCTTGGGGCTAGAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCAATCTCTCTTGATATAAACCATGAATCTTGGGGCTAGAACAGA  200

seq1  TCTTTAAGAATCTATAGGAACAATCTCATACAGAGCATTCTACTACATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGAATCTATAGGAACAATCTCATACAGAGCATTCTACTACATGA  250

seq1  TTAAGAACATTCGTTTTATTATTTACTTGGTCTCTTTAAGCAAAGTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACATTCGTTTTATTATTTACTTGGTCTCTTTAAGCAAAGTTTCA  300

seq1  TGTGGTCTGAGCTGGCTCAAACTTGTTGTGCTGGCTCTAATCCTCTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTGAGCTGGCTCAAACTTGTTGTGCTGGCTCTAATCCTCTACCC  350

seq1  CCCAAGGTGGGATTACAGGTGTTTGCTGACACACTTCAGTGTTACTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGTGGGATTACAGGTGTTTGCTGACACACTTCAGTGTTACTGTTG  400

seq1  GGCTGGGGAGGGGACGGATGACTCAGTGGTAGAGCTCTGGTTTAACATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGAGGGGACGGATGACTCAGTGGTAGAGCTCTGGTTTAACATGT  450

seq1  GTAAAGAAAAGGGTGTCATTTCATAGGGTAACCCAGGTCACCAGTATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAAAAGGGTGTCATTTCATAGGGTAACCCAGGTCACCAGTATATC  500

seq1  CCAGCACACTGAAGGAAGAGTTTACATGAGCAGATAAGGAATTTAATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACACTGAAGGAAGAGTTTACATGAGCAGATAAGGAATTTAATACT  550

seq1  TGGTCACTGTATGTCCTGAGGCAAAGCAAACAGATCTCTCATTTGACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTGTATGTCCTGAGGCAAAGCAAACAGATCTCTCATTTGACTCT  600

seq1  AAGGGTGACTGCAGGTGACCATTAAATGACTCAGGAGAAACTAGGTGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGACTGCAGGTGACCATTAAATGACTCAGGAGAAACTAGGTGCCA  650

seq1  TATGATAGCACATGATTGCTTTGGGCTAAAGGTTCTCTCCTAGAGCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAGCACATGATTGCTTTGGGCTAAAGGTTCTCTCCTAGAGCTCTG  700

seq1  CTGGCTGCTGGCTGAACCGACATCAGTACACTTGGCCACAACATAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCTGGCTGAACCGACATCAGTACACTTGGCCACAACATAGAAAG  750

seq1  GCGAGCAGTAGCAGAAGAAGACAAACATGCTTGTGAAATATGGATAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCAGTAGCAGAAGAAGACAAACATGCTTGTGAAATATGGATAATAA  800

seq1  ATAGTTTTGTTTTGCTTCTTAATTAGCCAAGATCTTGTGGTTTTTCATAA  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAGTTTTGTTTTGCTTCTTAATTAGCC-AGATCTTGTGGTTTTTCATAA  849

seq1  AGGTTTGTTGATAAGATGTAGGTTAAATTTAACTTATAAAAATTTCACTT  900
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTTTTGTTGATAAGATGTAGGTTAAATTTAAC-TATAAAAATTTCACTT  898

seq1  GTTTTATACCACATTTTTTGTCTGTGTTATGCTATTTTGGCAGGGGTTGG  950
        ||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTTTTTACCACATTTTTTGTCTGTG-TATGCTATTTTGGCAGGGGTTGG  947

seq1  GGGTGTCCAGCTTGAAGAGCAAAATGATTGATATATGTTATAATTAGTGA  1000
      |||||| ||||||| ||||| |||||||||||||||||| ||||||||||
seq2  GGGTGT-CAGCTTG-AGAGC-AAATGATTGATATATGTT-TAATTAGTGA  993

seq1  ATGAAGGCTGCATGTCACAGGTGGTCA  1027
       ||||||||||||| ||||||||||||
seq2  TTGAAGGCTGCATGGCACAGGTGGTCA  1020