BAC Information

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BAC

Clone NameB6Ng01-152N06
Chromosome6 (Build37)
Map Location 37,915,378 - 37,916,588
singlet/doubletsinglet
Overlap geneTrim24
Upstream geneDgki, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102
Downstream geneSvopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152N06.bB6Ng01-152N06.g
ACCDH948305DH948306
length1,1101,185
definitionDH948305|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N06, 5' end.DH948306|Mus musculus domesticus DNA, BAC clone: B6Ng01-152N06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtaagaatgttgcctattcggtgacattcagaattgcctctag
tatcgtaagagagacagtgaaagaaatcaggcattactatctactacata
tagttagaaatctcagggcaagcttagcaacataagtttagaattcttat
tataattatgtatggtagactacattacttattagtagaaagtcccttag
aataatagctaccacttagaataatagctgagctactcccatatgcaaga
atttacaatgacctaggaagaaggaaggttgtggtctaagaaggaattgg
agtaaatacttagaactatagatagctgagttacacccacacacaggaat
ttgcaatggcctagggggaaggtagactatacaatagactagaattagaa
ctaaggcaagggcacgaagcccttgcccctggcttctaagattaagctga
ccttaggtggaactgcttttgatcccagttgttaacactgattttatccc
agttggttcctgttagcttttaagtacacattcctctgttttgttgtcaa
agtaattttgcattagataacttcaatgtaccttgaatggccttaatgta
tcacttaatttcttttatattataaaagactgatgctcactttgacaaaa
atacattcagataccacactccctttggtctgtattttttttgtcatccg
tgccaactccttgctggtctgtaccaccgaacccaagttttgcctgtgga
ttgaggacccaagtgaggtctgtgtgcagcacccattctgtaggcagtct
cttcatttatggtgattgcttcctctgttattcagaaggttctacttgtc
atctagggacagcgtccagtgctgttggagtccttttcagaaagtccgcc
tgtgtctcgagcgcttcccttgaatctgccttcagccgttcagttcaggt
catgttggatccacgaggacctgattttttgtgccggaggaagagatcag
ggcaattcaatttcagcaagatgaatcccggtttgccaggactatcatcc
tctttctttaagaaggttatatttctcaacggtattgtaaaaacggtctt
ggtcgaacat
gaattccaggacagccaggactacagtaatactgcagaaataatgtctca
aaaaacccaaccactccgcccttctccccccaaaagaaagaaaagccact
agcaacttgcagctctgcacagtaaggggagagtggaggggcggatcaaa
cagcaacacttgacacacacacttcctccctcaccgaagctgaagaaaag
gccgatctagcaatccatgagagaatggccctttagaactgctatgccca
gcatctctaacagacaagataaaacaaaacaataaccaaacatttgtttt
tcctgatttttttttaatgcagttgccatcttacatggacactatttggt
gtcttagtagcatctgtctacaccttttccggcaggcagcctggcaaaga
actctgcttccattcacgtttggggaggacttcatttaagaatagtaaca
ggactatctccttacagttggccataattaatgggtaatgaaattaatat
tctaaaaatggattatcacacatccagatcacactaaaatctcaacttat
gtcaaactctatttctttcttagtgtagcactcactccaggctcctgtat
gaaatccaacaaggggaagaatgtcttttccttctttgctctttcttctt
tttctaccttctcttccttcttttattcttgtacacatttccttccttcc
tcttctttttattttcattgacaagaggttaaagaaatgggttatgaaag
aaaccaaagtccagtaaacagcaaaaacagagcagagagctcacaaaccc
ttagatcactgacaagcctttttgctgtctttagttttgatgagaaatct
ctagcacagcgcgctggcccagtgcggcgttacttaagcagcttggcgat
cctcggtgctcttgagacgcttcttccggggctgtacaaagtcatcgtct
gagtcgtcactgaacttacagtctctgcttcatgcctgaatctacctaga
aacctttttctggataagatctttagagttcttcaaaatagctttcaagt
ttataccagcattggctactcgaatcagctggtgggataaatataaggta
ggattaacacccaaagaaccaggttcgtattaaatatctcctcaattctg
ttcattttgcccagattaaccttgtatgactgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37915378_37916588
seq2: B6Ng01-152N06.g_70_1254 (reverse)

seq1  CAACAGTCCATTACAAGTTTCATAGTCGTGTGCAAAATAGGAACAGAATT  50
      ||||||||   |||||| || ||     || |||||||  ||||||||||
seq2  CAACAGTC--ATACAAGGTTAAT----CTGGGCAAAAT--GAACAGAATT  42

seq1  GTGAGAGATTATTTTTATTAACGAAACCTGGGTCTTTTGGGTGTTAATTC  100
      | | |||   || |||| | ||| ||||||| || |||||||||||| ||
seq2  GAG-GAG---ATATTTAAT-ACG-AACCTGGTTC-TTTGGGTGTTAA-TC  84

seq1  CTACCTGTATTTTTATCCCACAGCCTGATTCTGAAGTAGCCAATGCTGGT  150
      |||||| ||| ||||||||||   |||||||   ||||||||||||||||
seq2  CTACCT-TATATTTATCCCACCAGCTGATTC--GAGTAGCCAATGCTGGT  131

seq1  ATAAAACTTGAAAGCTATTTTGAAGAACTTCTAAAGAATCTTTATCCAGA  200
      || ||||||||||||||||||||||||| ||||||| ||| |||||||| 
seq2  AT-AAACTTGAAAGCTATTTTGAAGAAC-TCTAAAG-ATC-TTATCCAG-  176

seq1  AAAAAGGTTTCCTAAGGTAGAATTCAGGCATGAAGCAGAAGACTGTAAGT  250
      |||||||||||   |||||| ||||||||||||||||| |||||||||||
seq2  AAAAAGGTTTC--TAGGTAG-ATTCAGGCATGAAGCAG-AGACTGTAAGT  222

seq1  TCAGTGACGACTCAGACGATGACTTTGTACAGCCCCGGAAGAAGCGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACGACTCAGACGATGACTTTGTACAGCCCCGGAAGAAGCGTCTC  272

seq1  AAGAGCACCGAGGATCGCC-AGCTGCTTAAGTAACGCCGCACTGGGCCAG  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGAGCACCGAGGATCGCCAAGCTGCTTAAGTAACGCCGCACTGGGCCAG  322

seq1  CGCGCTGTGCTAGAGATTTCTCATCAAAACTAAAGACAGC-AAAAGGCTT  398
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CGCGCTGTGCTAGAGATTTCTCATCAAAACTAAAGACAGCAAAAAGGCTT  372

seq1  GTCAGTGATCTAAGGGTTTGTGAGCTCTCTGCTCTGTTTTTGCTGTTTAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGATCTAAGGGTTTGTGAGCTCTCTGCTCTGTTTTTGCTGTTTAC  422

seq1  TGGACTTTGGTTTCTTTCATAACCCATTTCTTTAACCTCTTGTCAATGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTGGTTTCTTTCATAACCCATTTCTTTAACCTCTTGTCAATGAA  472

seq1  AATAAAAAGAAGAGGAAGGAAGGAAATGTGTACAAGAATAAAAGAAGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGAAGAGGAAGGAAGGAAATGTGTACAAGAATAAAAGAAGGAA  522

seq1  GAGAAGGTAGAAAAAGAAGAAAGAGCAAAGAAGGAAAAGACATTCTTCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTAGAAAAAGAAGAAAGAGCAAAGAAGGAAAAGACATTCTTCCC  572

seq1  CTTGTTGGATTTCATACAGGAGCCTGGAGTGAGTGCTACACTAAGAAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGATTTCATACAGGAGCCTGGAGTGAGTGCTACACTAAGAAAGA  622

seq1  AATAGAGTTTGACATAAGTTGAGATTTTAGTGTGATCTGGATGTGTGATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTTTGACATAAGTTGAGATTTTAGTGTGATCTGGATGTGTGATA  672

seq1  ATCCATTTTTAGAATATTAATTTCATTACCCATTAATTATGGCCAACTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTTTAGAATATTAATTTCATTACCCATTAATTATGGCCAACTGT  722

seq1  AAGGAGATAGTCCTGTTACTATTCTTAAATGAAGTCCTCCCCAAACGTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATAGTCCTGTTACTATTCTTAAATGAAGTCCTCCCCAAACGTGA  772

seq1  ATGGAAGCAGAGTTCTTTGCCAGGCTGCCTGCCGGAAAAGGTGTAGACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCAGAGTTCTTTGCCAGGCTGCCTGCCGGAAAAGGTGTAGACAG  822

seq1  ATGCTACTAAGACACCAAATAGTGTCCATGTAAGATGGCAACTGCATTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTAAGACACCAAATAGTGTCCATGTAAGATGGCAACTGCATTAA  872

seq1  AAAAAAATCAGGAAAAACAAATGTTTGGTTATTGTTTTGTTTTATCTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCAGGAAAAACAAATGTTTGGTTATTGTTTTGTTTTATCTTGT  922

seq1  CTGTTAGAGATGCTGGGCATAGCAGTTCTAAAGGGCCATTCTCTCATGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGAGATGCTGGGCATAGCAGTTCTAAAGGGCCATTCTCTCATGGA  972

seq1  TTGCTAGATCGGCCTTTTCTTCAGCTTCGGTGAGGGAGGAAGTGTGTGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGATCGGCCTTTTCTTCAGCTTCGGTGAGGGAGGAAGTGTGTGTG  1022

seq1  TCAAGTGTTGCTGTTTGATCCGCCCCTCCACTCTCCCCTTACTGTGCAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTTGCTGTTTGATCCGCCCCTCCACTCTCCCCTTACTGTGCAGA  1072

seq1  GCTGCAAGTTGCTAGTGGCTTTTCTTTCTTTTGGGGGGAGAAGGGCGGAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAGTTGCTAGTGGCTTTTCTTTCTTTTGGGGGGAGAAGGGCGGAG  1122

seq1  TGGTTGGGTTTTTTGAGACATTATTTCTGCAGTATTACTGTAGTCCTGGC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGGTTTTTTGAGACATTATTTCTGCAGTATTACTGTAGTCCTGGC  1172

seq1  TGTCCTGGAATTC  1211
      |||||||||||||
seq2  TGTCCTGGAATTC  1185