BAC Information

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BAC

Clone NameB6Ng01-154H19
Chromosome6 (Build37)
Map Location 117,574,382 - 117,727,931
singlet/doubletdoublet
Overlap geneEG640370
Upstream geneZfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneEG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154H19.bB6Ng01-154H19.g
ACCDH949517DH949518
length536475
definitionDH949517|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H19, 5' end.DH949518|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,574,382 - 117,574,922)(117,727,451 - 117,727,931)
sequence
cattaaaactaacatgatttgcttgcaacaggtcttccttataggtttgg
tgtgagcaaaagcatgtagacgcgggcgcaggcgggggctagaattgaga
ctaaactagaaaaggaatagaaaagtagcatctctgccgtttgtagatgt
aagtacaatagcccttttgtagagagagatttcgagccgggcatggtggt
gcacgcctttaatcccagcactcgggaggcagaggcagacggatttctga
gttcaaggccagcctggtccacagagtgagttccagggcagccagggcta
cacagagaaaccctgtctcataaaaccaaaagagagacagacagagacag
agagagacagagacacagaatacaagagctgaactaataagtacaagtca
gattggctggttccacatggttgttaaggaacccagagaggttagaggct
atcctcacgtagcatgttgaggactctgggctcagtcccccaacatgcta
ccataccatttagtgcaataatgggggggggggggg
taaatgatgtgcaccatgtcacatctgtcttccagagtgaatatcacacc
tctaagggctgtggcacagaggggaaggacctgggcttgctgggtaagca
gatgtgctatgtatgggcttgcgaggtatgcagattttctcagcatatgc
ttgctcatgtccttctcactgtgttcttagggactagcgcaggatagatt
gccttcctttttagaaatctcaaggaagtgatgttcagagcagtaattaa
aaactttaaaaatttattctttggaaacttcatacgtgtatgtgaatgaa
gtattttgattttatcaacttcctactacctcctaccaactccctctagg
atccactaacccacctcactcaggacttcatgtcctttaaaaaattactg
taattaattaatgaccccattaagttcagttactgctgaccatgtgtgac
tggggtgaatgggtgtggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_117574382_117574922
seq2: B6Ng01-154H19.b_36_577

seq1  GAATTCCATTAAAACTAACATGATTTGC-TGCAACAGGTCTTCCTTATAG  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCCATTAAAACTAACATGATTTGCTTGCAACAGGTCTTCCTTATAG  50

seq1  GTTTGGTGTGAGCAAAAGCATGTAGACGCGGGCGCAGGCGGGGGCTAGAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTGTGAGCAAAAGCATGTAGACGCGGGCGCAGGCGGGGGCTAGAA  100

seq1  TTGAGACTAAACTAGAAAAGGAATAGAAAAGTAGCATCTCTGCCGTTTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTAAACTAGAAAAGGAATAGAAAAGTAGCATCTCTGCCGTTTGT  150

seq1  AGATGTAAGTACAATAGCCCTTTTGTAGAGAGAGATTTCGAGCCGGGCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAGTACAATAGCCCTTTTGTAGAGAGAGATTTCGAGCCGGGCAT  200

seq1  GGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGACGGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGACGGAT  250

seq1  TTCTGAGTTCAAGGCCAGCCTGGTCCACAGAGTGAGTTCCAGGGCAGCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCAAGGCCAGCCTGGTCCACAGAGTGAGTTCCAGGGCAGCCA  300

seq1  GGGCTACACAGAGAAACCCTGTCTCATAAAACCAAAAGAGAGACAGACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACACAGAGAAACCCTGTCTCATAAAACCAAAAGAGAGACAGACAG  350

seq1  AGACAGAGAGAGACAGAGACACAGAAGACAAGAGCTGAACTAATAAGTAC  399
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGACAGAGAGAGACAGAGACACAGAATACAAGAGCTGAACTAATAAGTAC  400

seq1  AAGTCAGATTGGCTGGTTCCACATGGTTGTTAAGGAACCCAGAGAGGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGATTGGCTGGTTCCACATGGTTGTTAAGGAACCCAGAGAGGTTA  450

seq1  GAGGCTATCCTCACGTAGCATGTTGAGGACTCTGGGCTCAGTCCCCCAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATCCTCACGTAGCATGTTGAGGACTCTGGGCTCAGTCCCCCAAC  500

seq1  ATGCTACCATACCATTTAGTGCAATAATGGGGGGGGGGGGGG  541
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACCATACCATTTAGTGCAATAATGGGGGGGGGGGGGG  542

seq1: chr6_117727451_117727931
seq2: B6Ng01-154H19.g_67_547 (reverse)

seq1  CCCCACCCCACACCCATTCACCCCAGTCACACATGGTCAGCAGTAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCACACCCATTCACCCCAGTCACACATGGTCAGCAGTAACTGA  50

seq1  ACTTAATGGGGTCATTAATTAATTACAGTAATTTTTTAAAGGACATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGGGGTCATTAATTAATTACAGTAATTTTTTAAAGGACATGAAG  100

seq1  TCCTGAGTGAGGTGGGTTAGTGGATCCTAGAGGGAGTTGGTAGGAGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGAGGTGGGTTAGTGGATCCTAGAGGGAGTTGGTAGGAGGTAG  150

seq1  TAGGAAGTTGATAAAATCAAAATACTTCATTCACATACACGTATGAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTTGATAAAATCAAAATACTTCATTCACATACACGTATGAAGTT  200

seq1  TCCAAAGAATAAATTTTTAAAGTTTTTAATTACTGCTCTGAACATCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAATAAATTTTTAAAGTTTTTAATTACTGCTCTGAACATCACTT  250

seq1  CCTTGAGATTTCTAAAAAGGAAGGCAATCTATCCTGCGCTAGTCCCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGATTTCTAAAAAGGAAGGCAATCTATCCTGCGCTAGTCCCTAAG  300

seq1  AACACAGTGAGAAGGACATGAGCAAGCATATGCTGAGAAAATCTGCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTGAGAAGGACATGAGCAAGCATATGCTGAGAAAATCTGCATAC  350

seq1  CTCGCAAGCCCATACATAGCACATCTGCTTACCCAGCAAGCCCAGGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCAAGCCCATACATAGCACATCTGCTTACCCAGCAAGCCCAGGTCCT  400

seq1  TCCCCTCTGTGCCACAGCCCTTAGAGGTGTGATATTCACTCTGGAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTGTGCCACAGCCCTTAGAGGTGTGATATTCACTCTGGAAGACA  450

seq1  GATGTGACATGGTGCACATCATTTAGAATTC  481
      |||||||||||||||||||||||||||||||
seq2  GATGTGACATGGTGCACATCATTTAGAATTC  481